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// --></script><table class="medium1" style="border: 2px solid rgb(51, 102, 153);" id="myncbi_off" cellpadding="2" cellspacing="0"><tbody><tr><td align="left" bgcolor="#336699"><a href="http://www.ncbi.nlm.nih.gov/sites/myncbi/?"><font color="#ffffff"><b>My NCBI</b></font></a></td><td align="right" bgcolor="#336699"><a href="http://www.ncbi.nlm.nih.gov/books/NBK3842/" title="My NCBI help"><img src="blastp%20of%20m.caps_files/myncbihelpicon.gif" alt="My NCBI help" border="0"></a></td></tr><tr><td colspan="2" nowrap="nowrap"><a href="http://www.ncbi.nlm.nih.gov/sites/myncbi/?back_url=http%3A//blast.ncbi.nlm.nih.gov/Blast.cgi%3FALIGNMENTS%3D100%26ALIGNMENT%5FVIEW%3DPairwise%26BLAST%5FPROGRAMS%3Dblastp%26CDD%5FRID%3Ddata%5Fcache%5Fseq%253A53758644%26CDD%5FSEARCH%5FSTATE%3D4%26CLIENT%3Dweb%26CMD%3DGet%26COMPOSITION%5FBASED%5FSTATISTICS%3D2%26DATABASE%3Dnr%26DESCRIPTIONS%3D100%26EQ%5FOP%3DAND%26EXPECT%3D10%26FILTER%3DF%26FORMAT%5FNUM%5FORG%3D1%26FORMAT%5FOBJECT%3DAlignment%26FORMAT%5FTYPE%3DHTML%26FULL%5FDBNAME%3Dnr%26GAPCOSTS%3D11%2B1%26GET%5FSEQUENCE%3Don%26HSP%5FRANGE%5FMAX%3D0%26JOB%5FTITLE%3Dmca%253AMCA0779%2BmxaF%253B%2Bmethanol%2Bdehydrogenase%2Bprotein%2C...%26LAYOUT%3DOneWindow%26MASK%5FCHAR%3D2%26MASK%5FCOLOR%3D1%26MATRIX%5FNAME%3DBLOSUM62%26MAX%5FNUM%5FSEQ%3D100%26NEW%5FVIEW%3Don%26NUM%5FDIFFS%3D0%26NUM%5FOPTS%5FDIFFS%3D0%26NUM%5FORG%3D1%26NUM%5FOVERVIEW%3D100%26OLD%5FBLAST%3Dfalse%26PAGE%3DProteins%26PAGE%5FTYPE%3DBlastSearch%26PROGRAM%3Dblastp%26QUERY%5FINFO%3D%2Bmca%253AMCA0779%2BmxaF%253B%2Bmethanol%2Bdehydrogenase%2B%26QUERY%5FLENGTH%3D601%26REPEATS%3Drepeat%5F7165%26RID%3DCJ3JAY4J013%26RTOE%3D13%26SEARCH%5FDB%5FSTATUS%3D31%26SELECTED%5FPROG%5FTYPE%3Dblastp%26SERVICE%3Dplain%26SHORT%5FQUERY%5FADJUST%3Don%26SHOW%5FLINKOUT%3Don%26SHOW%5FOVERVIEW%3Don%26USER%5FDEFAULT%5FMATRIX%3D3%26USER%5FDEFAULT%5FPROG%5FTYPE%3Dblastp%26USER%5FTYPE%3D2%26WORD%5FSIZE%3D3%26%5FPGR%3D1%26%5FPGR%3D1%26db%3Dprotein%26stype%3Dprotein" title="Click to sign in" onclick="MyNCBI_auto_submit('http://www.ncbi.nlm.nih.gov/sites/myncbi/?back_url=http%3A//blast.ncbi.nlm.nih.gov/Blast.cgi%3FALIGNMENTS%3D100%26ALIGNMENT%5FVIEW%3DPairwise%26BLAST%5FPROGRAMS%3Dblastp%26CDD%5FRID%3Ddata%5Fcache%5Fseq%253A53758644%26CDD%5FSEARCH%5FSTATE%3D4%26CLIENT%3Dweb%26CMD%3DGet%26COMPOSITION%5FBASED%5FSTATISTICS%3D2%26DATABASE%3Dnr%26DESCRIPTIONS%3D100%26EQ%5FOP%3DAND%26EXPECT%3D10%26FILTER%3DF%26FORMAT%5FNUM%5FORG%3D1%26FORMAT%5FOBJECT%3DAlignment%26FORMAT%5FTYPE%3DHTML%26FULL%5FDBNAME%3Dnr%26GAPCOSTS%3D11%2B1%26GET%5FSEQUENCE%3Don%26HSP%5FRANGE%5FMAX%3D0%26JOB%5FTITLE%3Dmca%253AMCA0779%2BmxaF%253B%2Bmethanol%2Bdehydrogenase%2Bprotein%2C...%26LAYOUT%3DOneWindow%26MASK%5FCHAR%3D2%26MASK%5FCOLOR%3D1%26MATRIX%5FNAME%3DBLOSUM62%26MAX%5FNUM%5FSEQ%3D100%26NEW%5FVIEW%3Don%26NUM%5FDIFFS%3D0%26NUM%5FOPTS%5FDIFFS%3D0%26NUM%5FORG%3D1%26NUM%5FOVERVIEW%3D100%26OLD%5FBLAST%3Dfalse%26PAGE%3DProteins%26PAGE%5FTYPE%3DBlastSearch%26PROGRAM%3Dblastp%26QUERY%5FINFO%3D%2Bmca%253AMCA0779%2BmxaF%253B%2Bmethanol%2Bdehydrogenase%2B%26QUERY%5FLENGTH%3D601%26REPEATS%3Drepeat%5F7165%26RID%3DCJ3JAY4J013%26RTOE%3D13%26SEARCH%5FDB%5FSTATUS%3D31%26SELECTED%5FPROG%5FTYPE%3Dblastp%26SERVICE%3Dplain%26SHORT%5FQUERY%5FADJUST%3Don%26SHOW%5FLINKOUT%3Don%26SHOW%5FOVERVIEW%3Don%26USER%5FDEFAULT%5FMATRIX%3D3%26USER%5FDEFAULT%5FPROG%5FTYPE%3Dblastp%26USER%5FTYPE%3D2%26WORD%5FSIZE%3D3%26%5FPGR%3D1%26%5FPGR%3D1%26db%3Dprotein%26stype%3Dprotein');return false;">[Sign In]</a> <a 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title="Click to register for an account" onclick="MyNCBI_auto_submit('http://www.ncbi.nlm.nih.gov/sites/myncbi/register/?back_url=http%3A//blast.ncbi.nlm.nih.gov/Blast.cgi%3FALIGNMENTS%3D100%26ALIGNMENT%5FVIEW%3DPairwise%26BLAST%5FPROGRAMS%3Dblastp%26CDD%5FRID%3Ddata%5Fcache%5Fseq%253A53758644%26CDD%5FSEARCH%5FSTATE%3D4%26CLIENT%3Dweb%26CMD%3DGet%26COMPOSITION%5FBASED%5FSTATISTICS%3D2%26DATABASE%3Dnr%26DESCRIPTIONS%3D100%26EQ%5FOP%3DAND%26EXPECT%3D10%26FILTER%3DF%26FORMAT%5FNUM%5FORG%3D1%26FORMAT%5FOBJECT%3DAlignment%26FORMAT%5FTYPE%3DHTML%26FULL%5FDBNAME%3Dnr%26GAPCOSTS%3D11%2B1%26GET%5FSEQUENCE%3Don%26HSP%5FRANGE%5FMAX%3D0%26JOB%5FTITLE%3Dmca%253AMCA0779%2BmxaF%253B%2Bmethanol%2Bdehydrogenase%2Bprotein%2C...%26LAYOUT%3DOneWindow%26MASK%5FCHAR%3D2%26MASK%5FCOLOR%3D1%26MATRIX%5FNAME%3DBLOSUM62%26MAX%5FNUM%5FSEQ%3D100%26NEW%5FVIEW%3Don%26NUM%5FDIFFS%3D0%26NUM%5FOPTS%5FDIFFS%3D0%26NUM%5FORG%3D1%26NUM%5FOVERVIEW%3D100%26OLD%5FBLAST%3Dfalse%26PAGE%3DProteins%26PAGE%5FTYPE%3DBlastSearch%26PROGRAM%3Dblastp%26QUERY%5FINFO%3D%2Bmca%253AMCA0779%2BmxaF%253B%2Bmethanol%2Bdehydrogenase%2B%26QUERY%5FLENGTH%3D601%26REPEATS%3Drepeat%5F7165%26RID%3DCJ3JAY4J013%26RTOE%3D13%26SEARCH%5FDB%5FSTATUS%3D31%26SELECTED%5FPROG%5FTYPE%3Dblastp%26SERVICE%3Dplain%26SHORT%5FQUERY%5FADJUST%3Don%26SHOW%5FLINKOUT%3Don%26SHOW%5FOVERVIEW%3Don%26USER%5FDEFAULT%5FMATRIX%3D3%26USER%5FDEFAULT%5FPROG%5FTYPE%3Dblastp%26USER%5FTYPE%3D2%26WORD%5FSIZE%3D3%26%5FPGR%3D1%26%5FPGR%3D1%26db%3Dprotein%26stype%3Dprotein');return 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<span id="advView" class="">
<input name="NEW_VIEW" id="NEW_VIEW" class="cb reset" defval="checked" checked="checked" type="checkbox">
<label for="NEW_VIEW">Advanced View</label>
<span class=""><input name="OLD_BLAST" id="OLD_BLAST" class="cb reset" defval="unchecked" false="" type="checkbox">
<label for="OLD_BLAST">Use old BLAST report format</label></span>
</span>
<a class="resetAll" id="resetAll">Reset form to defaults</a>
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Alignments object formatting help" id="formatHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp1">
These options control formatting of alignments in results pages. The
default is HTML, but other formats (including plain text) are available.
PSSM and PssmWithParameters are representations of Position Specific Scoring Matrices and are only available for PSI-BLAST. 
The Advanced view option allows the database descriptions to be sorted by various indices in a table.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#format_object" target="helpWin" title="Additional alignments object formatting help">more...</a>
</p>
</div><!-- ARIA -->
</div>
</td>
</tr>

<tr class="odd paramSet">
<td class="hd"><label for="ALIGNMENT_VIEW">Alignment View</label></td>
<td>
<div class="fi">
<select name="ALIGNMENT_VIEW" id="ALIGNMENT_VIEW" defval="Pairwise" class="reset">
<option value="Pairwise" selected="selected">Pairwise</option>
<option value="PairwiseWithIdentities">Pairwise with dots for identities</option>
<option value="QueryAnchored">Query-anchored with dots for identities</option>
<option value="QueryAnchoredNoIdentities">Query-anchored with letters for identities</option>
<option value="FlatQueryAnchored">Flat query-anchored with dots for identities</option>
<option value="FlatQueryAnchoredNoIdentities">Flat query-anchored with letters for identities</option>

</select>

<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Alignments view options help" id="alnViewHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp2">
Choose how to view alignments.
The default "pairwise" view shows how each subject sequence aligns
individually to the query sequence. The "query-anchored" view shows how
all subject sequences align to the query sequence. For each view type,
you can choose to show "identities" (matching residues) as letters or
dots.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#alignment_view" target="helpWin" title="Additional alignments view options help">more...</a>
</p>
</div><!-- ARIA -->
</div>
</td>
</tr>

<tr class="paramSet">
<td class="hd"><label>Display</label></td>
<td class="cb">
<div class="fi">
<input name="SHOW_OVERVIEW" id="SHOW_OVERVIEW" class="cb reset" defval="checked" checked="checked" type="checkbox">
<label class="rb" for="SHOW_OVERVIEW">Graphical Overview</label>

<input name="SHOW_LINKOUT" id="SHOW_LINKOUT" class="cb reset" defval="checked" checked="checked" type="checkbox">
<label class="rb" for="SHOW_LINKOUT">Linkout</label>

<input name="GET_SEQUENCE" id="GET_SEQUENCE" class="cb reset" defval="checked" checked="checked" type="checkbox">
<label class="rb" for="GET_SEQUENCE">Sequence Retrieval</label>

<input name="NCBI_GI" id="NCBI_GI" class="cb reset" defval="unchecked" type="checkbox">
<label class="rb" for="NCBI_GI">NCBI-gi</label>

<input name="SHOW_CDS_FEATURE" id="SHOW_CDS_FEATURE" class="cb reset blastn" defval="unchecked" type="checkbox">
<label for="SHOW_CDS_FEATURE" class="blastn">CDS feature</label>
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Alignments display options help" id="displayHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<ul aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp3">
<li>Graphical Overview: Graphical Overview: Show graph of similar sequence regions aligned to  query.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#show_overview" target="helpWin" title="Graphical Overview help">more...</a>
</li>
<li>Database LinkOuts: Show links from matching sequences to entries in specialized NCBI databases.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#show_linkout" title="LinkOut help" target="helpWin">more...</a>
</li>
<li>Sequence Retrieval: Show buttons to download matching sequences.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#get_sequence" title="Sequence Retrieval help" target="helpWin">more...</a>
</li>
<li>NCBI-gi: Show NCBI gi identifiers.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#ncbi_gi" title="NCBI-gi help" target="helpWin">more...</a>
</li>
<li>CDS feature: Show annotated coding region and translation.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#show_cds_feature" title="CDS feature help" target="helpWin">more...</a>
</li></ul>
</div><!-- ARIA -->
</div>
</td>
</tr>


<tr class="paramSet odd xgl">
<td class="hd"><label>Masking</label></td>
<td>
<div class="fi">
<label for="MASK_CHAR"> Character: </label>
<select name="MASK_CHAR" id="MASK_CHAR" class="reset" defval="2">
<option value="0">X for protein, n for nucleotide</option>
<option value="2" selected="selected">Lower Case</option>
</select>
<label for="MASK_COLOR"> Color:</label>
<select name="MASK_COLOR" id="MASK_COLOR" class="reset" defval="1">
<option value="0">Black
</option>

<option value="1" selected="selected">Grey
</option>

<option value="2">Red
</option>

</select>
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Alignments masking help" id="maskingHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<ul aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp4">
<li>Masking Character: Display masked (filtered) sequence regions as 
lower-case or as specific letters (N for nucleotide, P for protein).
</li>
<li>Masking Color: Display masked sequence regions in the given color.</li>
</ul>
</div><!-- ARIA -->
</div>
</td>
</tr>


<tr class="paramSet xgl">
<td class="hd"><label>Limit results</label></td>
<td>
<div class="fi">
<label for="FRM_DESCRIPTIONS">Descriptions:</label>
<select name="DESCRIPTIONS" id="FRM_DESCRIPTIONS" class="reset" defval="100">
<option value="0">0</option>
<option value="10">10</option>
<option value="50">50</option>
<option value="100" selected="selected">100</option>






</select>

<label for="FRM_NUM_OVERVIEW">Graphical overview:</label>
<select name="NUM_OVERVIEW" id="FRM_NUM_OVERVIEW" class="reset" defval="100">
<option value="0">0</option>
<option value="10">10</option>
<option value="50">50</option>
<option value="100" selected="selected">100</option>



</select>

<label for="FRM_ALIGNMENTS">Alignments:</label>
<select name="ALIGNMENTS" id="FRM_ALIGNMENTS" class="reset" defval="100">
<option value="0">0</option>
<option value="10">10</option>
<option value="50">50</option>
<option value="100" selected="selected">100</option>






</select>
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Limit number of descriptions/alignments help" id="numHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<ul aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp5">
<li>Descriptions: Show short descriptions for up to the given number of  sequences.</li> 
<li>Alignments:  Show alignments for up to the given number of sequences, in order of statistical significance.</li>
</ul>
</div><!-- ARIA -->
</div>
</td>
</tr>

<tr class="paramSet odd xgl">
<td class="hd"></td>
<td>
<div class="">
<label for="qorganism">Organism</label>
<span class="instr">Type common name, binomial, taxid, or group name. Only 20 top taxa will be shown.</span><br>
<input autocomplete="off" name="FORMAT_ORGANISM" size="55" id="qorganism" sgdict="taxids_sg" value="Enter organism name or id--completions will be suggested" sgstyle="SG_green" sgdelay="50" class="reset orgHint">
<input name="FORMAT_ORG_EXCLUDE" class="oExclR cb" id="orgExcl" type="checkbox">        
<input value="1" name="FORMAT_NUM_ORG" id="numOrg" type="hidden">
<label for="orgExcl" class="right">Exclude</label>
<a href="#" title="Add organism" id="addOrg"><img src="blastp%20of%20m.caps_files/addOrg.jpg" id="addOrgIm" alt="Add organism" mouseovimg="css/images/addOrgOver.jpg" mouseoutimg="css/images/addOrg.jpg" mousedownimg="css/images/addOrgDown.jpg" mouseupimg="css/images/addOrgOver.jpg" border="0"></a>
<div id="orgs">

</div>
<div class="fi">
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Limit results by organism help" id="organismHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp6">
Show only sequences from the given organism.
</p>
</div><!-- ARIA -->
</div>
</div>
</td>
</tr>

<tr class="paramSet xgl">
<td class="hd"></td>
<td>
<div class="fi">
<label for="FORMAT_EQ_TEXT">Entrez query:</label>
<input name="FORMAT_EQ_TEXT" id="FORMAT_EQ_TEXT" size="60" class="reset" type="text">
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Limit results by Entrez query help" id="entrezHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp7">
Show only those sequences that match the given Entrez query.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#limit_result" title="Additional limit results by Entrez query help" target="helpWin">more...</a>
</p>
</div><!-- ARIA -->
</div>
</td>
</tr>

  
<tr class="paramSet odd xgl">
<td class="hd"></td>
<td>
<div class="fi">
<label for="EXPECT_LOW">Expect Min:</label> <input name="EXPECT_LOW" id="EXPECT_LOW" size="10" class="reset" type="text">
<label for="EXPECT_HIGH">Expect Max:</label> <input name="EXPECT_HIGH" id="EXPECT_HIGH" size="10" class="reset" type="text">
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Limit results by expect value range help" id="expectHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp8">
Show only sequences with expect values in the given range.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#expect_range" target="helpWin" title="Additional limit results by expect value range help">more...</a>
</p>
</div><!-- ARIA -->
</div>
</td>
</tr>
<tr class="paramSet xgl">
<td class="hd"></td>
<td>
 <div class="fi">
<label for="PERC_IDENT_LOW">Percent Identity Min:</label> <input name="PERC_IDENT_LOW" id="PERC_IDENT_LOW" size="10" class="reset" type="text">
<label for="PERC_IDENT_HIGH">Percent Identity Max:</label> <input name="PERC_IDENT_HIGH" id="PERC_IDENT_HIGH" size="10" class="reset" type="text">
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="Limit results by percent identity range help" id="percIdentHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp10">
 Show only sequences with percent identity values in the given range.  
</p>
</div><!-- ARIA -->
</div>
</td>
</tr>      
<tr class="psiBlast odd paramSet xgl">
<td class="hd"><label>Format for</label></td>
<td>
<div class="fi">
<input name="RUN_PSIBLAST_FORM" id="RUN_PSIBLAST" class="cb psiBlast" type="checkbox">
<label class="rb psiBlast" for="RUN_PSIBLAST">PSI-BLAST</label>
<label for="I_THRESH">with inclusion threshold:</label>
<input name="I_THRESH" id="I_THRESH" size="10" defval="0.005" type="text">
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink  jig-ncbitoggler ui-ncbitoggler ui-widget" title="PSI BLAST formatting help" id="psiHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
<div class="ui-helper-reset" aria-live="assertive">
<ul aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp9">
<li>Format for PSI-BLAST: The Position-Specific Iterated BLAST 
(PSI-BLAST) program performs iterative searches with a protein query, 
in which sequences found in one round of search are used to build a 
custom score model for the next round.
<a href="http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml#psiblast" target="helpWin" title="Additional PSI BLAST formatting help">more...</a>
</li>  
<li>Inclusion Threshold: This sets the statistical significance threshold for including a sequence in the model used 
by PSI-BLAST to create the PSSM on the next iteration.</li> 
</ul>
</div><!-- ARIA -->
</div>
</td>
</tr>
</tbody></table>


<input name="ViewReport" value="ViewReport" type="hidden">
<input name="REFORMAT_REPORT" value="shown" type="hidden">
<input name="RID" value="CJ3JAY4J013" type="hidden">
<input name="CDD_RID" value="data_cache_seq:53758644" type="hidden">
<input name="CDD_SEARCH_STATE" value="4" type="hidden">

<input name="STEP_NUMBER" value="" id="stepNumber" type="hidden">
<input name="CMD" value="Get" type="hidden">
<input name="FORMAT_EQ_OP" value="AND" type="hidden">
<input name="RESULTS_PAGE_TARGET" id="resPageTarget" value="" type="hidden">
<!-- <input name="QUERY_INFO" type="hidden" value="mca:MCA0779 mxaF; methanol dehydrogenase" /> -->	
<!-- <input name="ENTREZ_QUERY" type="hidden" value="" /> -->	
<input name="QUERY_INDEX" value="0" type="hidden">
<!-- Those params are set in the template (blastn.dat, blastp.dat etc. -->
<input name="BLAST_PROGRAMS" value="blastp" type="hidden">
<input name="PAGE" value="Proteins" type="hidden">
<input name="PROGRAM" value="blastp" type="hidden">
<input name="MEGABLAST" value="" type="hidden">
<input name="RUN_PSIBLAST" value="" type="hidden">
<input name="BLAST_SPEC" id="blastSpec" value="" type="hidden">


<input name="QUERY" value="" type="hidden">
<input name="JOB_TITLE" value="mca:MCA0779 mxaF; methanol dehydrogenase protein,..." type="hidden">
<input name="QUERY_TO" value="" type="hidden">
<input name="QUERY_FROM" value="" type="hidden">
<input name="EQ_TEXT" value="" type="hidden">
<input name="ORGN" value="" type="hidden">
<input name="EQ_MENU" value="" type="hidden">
<input name="ORG_EXCLUDE" value="" type="hidden">
<input name="PHI_PATTERN" value="" type="hidden">
<input name="EXPECT" value="10" type="hidden">									
<input name="DATABASE" value="nr" type="hidden">
<input name="DB_GROUP" value="" type="hidden">
<input name="SUBGROUP_NAME" value="" type="hidden">

<input name="GENETIC_CODE" value="" type="hidden">
<input name="WORD_SIZE" value="3" type="hidden">
<input name="MATCH_SCORES" value="" type="hidden">			
<input name="MATRIX_NAME" value="BLOSUM62" type="hidden">				
<input name="GAPCOSTS" value="11 1" type="hidden">
<input name="MAX_NUM_SEQ" id="maxNumSeq" value="100" type="hidden">					
<input name="COMPOSITION_BASED_STATISTICS" value="2" type="hidden">			
<input name="NEWWIN" value="" type="hidden">
<input name="SHORT_QUERY_ADJUST" value="on" type="hidden">
<input name="FILTER" value="F;" type="hidden">
<input name="REPEATS" value="repeat_7165" type="hidden">
<input name="ID_FOR_PSSM" value="" type="hidden">
<input name="EXCLUDE_MODELS" value="" type="hidden">
<input name="EXCLUDE_SEQ_UNCULT" value="" type="hidden">
<input name="NUM_ORG" value="1" type="hidden">

<!-- PSSM -->
<input name="LCASE_MASK" value="" type="hidden">
<input name="TEMPLATE_TYPE" value="" type="hidden">
<input name="TEMPLATE_LENGTH" value="" type="hidden">
<input name="I_THRESH" value="" type="hidden">
<input name="PSI_PSEUDOCOUNT" value="" type="hidden">
<input name="HSP_RANGE_MAX" value="0" type="hidden">



<input name="ADJUSTED_FOR_SHORT_QUERY" value="" type="hidden">
<input name="MIXED_QUERIES" value="" type="hidden">
<input name="MIXED_DATABASE" id="mixedDb" value="" type="hidden">

</form>
</div> <!-- aria -->
                <div class="ui-helper-reset" aria-live="assertive">    
<form aria-hidden="true" name="FormatDownload" id="FormatDownload" class="resbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler">
<table class="options dwnl ">
<tbody><tr><td class="frh" colspan="6"><h3 class="tb">Download</h3></td></tr>
<tr>
<td id="tdal">
<div class="dnHeader">Alignment</div>
<div class="dnLinks">
<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&amp;RID=CJ3JAY4J013&amp;FORMAT_TYPE=Text&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get">Text</a>
<a class="xgl" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&amp;RID=CJ3JAY4J013&amp;FORMAT_TYPE=XML&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get">XML</a>
<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&amp;RID=CJ3JAY4J013&amp;FORMAT_TYPE=ASN.1&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get">ASN.1</a>
<a id="hitText" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&amp;RID=CJ3JAY4J013&amp;FORMAT_TYPE=Text&amp;FORMAT_OBJECT=Alignment&amp;ALIGNMENT_VIEW=Tabular&amp;CMD=Get">Hit Table(text)</a>
<a id="hitCvs" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&amp;RID=CJ3JAY4J013&amp;FORMAT_TYPE=CSV&amp;FORMAT_OBJECT=Alignment&amp;ALIGNMENT_VIEW=Tabular&amp;CMD=Get">Hit Table(csv)</a>
</div>
</td>
<td class="dnl xgl">
<div class="dnHeader">Search Strategies</div>
<div class="dnLinks">
<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=GetSaved&amp;RECENT_RESULTS=on&amp;RID=CJ3JAY4J013&amp;DOWNLOAD_OPTIONS=true">ASN.1</a>
</div>
</td>
<td class="dnl">
<div class="dnHeader">Bioseq</div>
<div class="dnLinks">
<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&amp;RID=CJ3JAY4J013&amp;FORMAT_TYPE=ASN.1&amp;FORMAT_OBJECT=Bioseq&amp;CMD=Get">ASN.1</a>
</div>
</td>
<td class="dnl hidden" id="dnPSSMPar">
<div class="dnHeader">PssmWithParameters</div>
<div class="dnLinks">
<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&amp;RID=CJ3JAY4J013&amp;FORMAT_TYPE=ASN.1&amp;FORMAT_OBJECT=PSSM_Scoremat&amp;CMD=Get">ASN.1</a>
</div>
</td>
<td>
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Download help" data-ncbitoggler-toggles="hlp11" id="dnHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a>
</td>
</tr>
</tbody></table>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler" id="hlp11">
  The Download link provides BLAST output that may be used as input to 
another program.
  This includes parseable formats such as the tabular report or XML as 
well as the Search Strategy files read by the BLAST+ applications.
  More details on the parseable (XML, tabular, and ASN.1) reports can be
 found at
  <a href="http://www.ncbi.nlm.nih.gov/books/NBK21097/" target="helpWin">http://www.ncbi.nlm.nih.gov/books/NBK21097/</a><br>
  <br>
  The following formats are offered under the Alignment section:<br>  
    1). "Text". Non-HTML standard BLAST report.<br>

    2). "XML". XML report based upon the DTD at <a href="http://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd" target="helpWin">http://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd</a><br>
    
    3). "ASN.1" Alignment. This is the alignment written out in Abstract Syntax Notation 1.<br>

    4). "Hit Table(text)". The tabular report as text.<br>

    5). "Hit Table(csv)". The tabular report ready for import into spread-sheet programs like Excel.<br>
  <br>
  The following report is offered under the Search Strategy section:<br>
  
  1). "ASN.1" Search Strategy. A record of the parameters, query, and 
database used in the search. This file can be used to start a 
stand-alone BLAST search, see
  <a href="http://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra" target="helpWin">http://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra</a>
  <br>
  <br>
  The following report is offered under the Bioseq section:<br>  
  1). "ASN.1". The query sequence in ASN.1
</p>    
</div><!-- ARIA -->
</form>
</div> <!-- aria -->
                <form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST" name="overview0">
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                <input name="CMD" value="Get" type="hidden">
                <p id="qb"><!--
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	Status=READY
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<div id="summary" class="">
<div id="ht"></div>
<h1>mca:MCA0779 mxaF; methanol dehydrogenase protein,... <span id="hdTitle" class="shownInl"></span></h1>
<div>
<div id="multipleSeqs" class="hidden">
<label for="queryList">Results for:</label>
<select id="queryList" name="queryList">
<option value="0" selected="selected" class="">lcl|6563 mca:MCA0779 mxaF; methanol dehydrogenase protein, large subunit; K14028 methanol dehydrogenase (cyt...(601aa)</option>
</select>
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="queryInfo" title="Multiple quries help" id="queryHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
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</div><!--/#multipleSeqs"-->

<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" id="queryInfo" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler">
Your BLAST job specified more than one input sequence.
This box lets you choose which input sequence to show BLAST results for.
</p>
</div><!-- ARIA -->
</div>
<div id="summarylists">
<div id="querysummary">
<dl>
<dt>Query ID</dt>
<dd class="hidden">
<a title="Find query in Entrez" href="http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&amp;db=protein&amp;term=6563&amp;dopt=GenBank">lcl|6563</a>
</dd>
<dd class="">lcl|6563</dd>
<dt>Description</dt>
<dd>mca:MCA0779 mxaF; methanol dehydrogenase protein, large subunit; 
K14028 methanol dehydrogenase (cytochrome c) subunit 1 [EC:1.1.2.7] (A)</dd>
<dt>Molecule type</dt>
<dd>amino acid</dd>
<dt>Query Length</dt>
<dd>601</dd>
</dl>
</div><!--/#querysummary-->

<div id="dbsummary">
<dl>
<dt>Database Name</dt>
<dd>nr</dd>
<dt>Description</dt>
<dd>All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="See multiple databases detailed information" class="jtg resArrowLinkB hidden  jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="dbDetails" id="showDetails"><span class="ui-ncbitoggler-master-text">See details</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd> <!-- -- Database or subject info ---->
<dt class="xgl">Program</dt>
<dd class="xgl">BLASTP 2.2.26+ <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="How to cite BLAST in publications" class="resArrowLinkB hidden shown jig-ncbitoggler ui-ncbitoggler jtg ui-widget" data-ncbitoggler-toggles="refInfo" id="showRefs"><span class="ui-ncbitoggler-master-text">Citation</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd>
</dl>
</div><!--/#dbsummary-->
</div><!--/#summarylists -->

<div class="ui-helper-reset" aria-live="assertive">  
<div aria-hidden="true" id="dbDetails" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler">
<table class="dbInfo  hidden ">
<caption> - organisms</caption>
<tbody><tr><th><div>Organim inclusion</div></th><th><div>Organims name</div></th></tr>
<tr><td>Included:</td><td></td></tr>
<tr><td>Excluded:</td><td></td></tr>
</tbody></table> <!-- organisms info table -->
<table class="dbInfo">
<caption>Blast search databases information</caption>
<tbody><tr><th><div>Database</div></th><th><div>Description</div></th><th><div>Posted Date</div></th></tr>

</tbody></table> <!-- multiple databases or subjects table -->
</div>
<div class="ui-helper-reset" aria-live="assertive">  
<div aria-hidden="true" id="refInfo" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler"> 
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&amp;cmd=Retrieve&amp;list_uids=9254694&amp;dopt=Citation">Reference </a>
<div>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
 programs", Nucleic Acids Res. 25:3389-3402.</div><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&amp;cmd=Retrieve&amp;list_uids=16218944&amp;dopt=Citation">Reference  - compositional score matrix adjustment</a>
<div>Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa 
Agarwala, Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu 
(2005) "Protein database searches using compositionally adjusted 
substitution matrices", FEBS J. 272:5101-5109.</div>       
 </div>  <!-- refInfo -->
</div> <!-- aria end -->
<!--<ul class="msg"><li class=""><p class=""></p></li></ul>-->

<div id="seealso">
<label>Other reports:</label>  
 <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="Show statistics" class="resArrowLinkB jtg jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="resStat" id="showStat"><span class="ui-ncbitoggler-master-text">Search Summary</span><span class="ui-icon ui-icon-triangle-1-e"></span></a>
 <span class="xgl">
 <a id="tax" class="hidden shown" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;RID=CJ3JAY4J013&amp;FORMAT_OBJECT=TaxBlast&amp;NCBI_GI=off&amp;DESCRIPTIONS=100&amp;ALIGNMENTS=100&amp;FORMAT_BLOCK_ON_RESPAGE=Top&amp;MASK_COLOR=1&amp;MASK_CHAR=2" target="Taxonomy BLAST Results for CJ3JAY4J013" title="See results arranged by taxonomy">[Taxonomy reports]</a>
 <a href="http://www.ncbi.nlm.nih.gov/blast/treeview/treeView.cgi?request=page&amp;blastRID=CJ3JAY4J013&amp;queryID=lcl%7C6563&amp;distmode=on&amp;entrezLim=&amp;ex=&amp;exl=&amp;exh=&amp;ns=100" class="" id="TreeViewlcl|6563" onclick="SetDimensions('TreeViewlcl|6563');return false;" target="trv1CJ3JAY4J013" title="See a distance tree of these pairwise comparisons">[Distance tree of results]</a>      
   
 <a title="Structure related to lcl|6563" href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=0&amp;hit=0&amp;query_gi=53758644&amp;blast_view=overview&amp;hsp=0&amp;taxname=&amp;client=blast">[Related Structures]</a> 
 <a href="http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi?CMD=submit&amp;blastRID=CJ3JAY4J013&amp;queryID=lcl%7C6563&amp;numSeqs=100" class="" id="MultiAlignlcl|6563" target="mlt1CJ3JAY4J013" title="Multple Alignment of query and target sequences with expect value better than 0.001">[Multiple alignment]</a> 
 </span>
</div> <!-- seealso -->
   
<div class="ui-helper-reset" aria-live="assertive">  
<div aria-hidden="true" id="resStat" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler">    
 <table id="params" class="dbInfo"> 
 <caption>Search Parameters</caption> 
 <tbody><tr><th><div>Search parameter name</div></th><th><div>Search parameter value</div></th></tr> 
 <tr><td>Program</td><td>blastp</td></tr><tr><td>Word size</td><td>3</td></tr><tr><td>Expect value</td><td>10</td></tr><tr><td>Hitlist size</td><td>100</td></tr><tr><td>Gapcosts</td><td>11,1</td></tr><tr><td>Matrix</td><td>BLOSUM62</td></tr><tr><td>Filter string </td><td>F</td></tr><tr><td>Genetic Code</td><td>1</td></tr><tr><td>Window Size</td><td>40</td></tr><tr><td>Threshold</td><td>11</td></tr><tr><td>Composition-based stats</td><td>2</td></tr>  
 </tbody></table> 
  <table id="dbStat" class="dbInfo">
 <caption>Database</caption>
 <tbody><tr><th><div>Database parameter name</div></th><th><div>Database parameter value</div></th></tr>
 <tr><td>Posted date</td><td>Nov 19, 2011  4:11 PM</td></tr>
 <tr><td>Number of letters</td><td>5,585,386,883</td></tr>
 <tr><td>Number of sequences</td><td>16,245,521</td></tr>
 <tr><td>Entrez query</td><td>none</td></tr> 
 </tbody></table>
  
 <table id="Kappa" class="dbInfo show xgl"> 
<caption>Karlin-Altschul statistics</caption> 
 <tbody><tr><th><div>Params</div></th><th><div>Ungapped</div></th><th><div>Gapped</div></th></tr>
 <tr><td>Lambda</td><td>0.318211</td><td>0.267</td></tr>
 <tr><td>K</td><td>0.136811</td><td>0.041</td></tr>
 <tr><td>H</td><td>0.439553</td><td>0.14</td></tr> 
 </tbody></table> 
 
 
 <table class="dbInfo show">
 <caption>Results Statistics</caption>
 <tbody><tr><th><div>Results Statistics parameter name</div></th><th><div>Results Statistics parameter value</div></th></tr>  
 <tr><td>Length adjustment</td><td> 146</td></tr><tr><td>Effective length of query</td><td> 455</td></tr><tr><td>Effective length of database</td><td> 7508508113</td></tr><tr><td>Effective search space</td><td> 1462161071735</td></tr><tr><td>Effective search space used</td><td> 1462161071735</td></tr>
 </tbody></table>
 <!-- Results statistics -->  
 </div>  <!-- resStat -->
 </div> <!-- aria end -->
</div><!--/#summary-->
</div><!--/#page-->
<!--<h2 class="" >Graphic Summary</h2>-->
<!-- <div id="viewRes"> -->


<div id="grView" class="hidden shown">
<h2 class="resArr">
<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showGraphic" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="graphicInfo" title="Show/hide Graphic Summary">
<span class="ui-ncbitoggler-master-text">Graphic Summary</span>
<span class="ui-icon ui-icon-plus-minus-big-open"></span>
</a>
</h2>
<div class="ui-helper-reset" aria-live="assertive">
<div aria-hidden="false" id="graphicInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showCDD" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="cddInfo">
<span class="ui-ncbitoggler-master-text">Show Conserved Domains</span>
<span class="ui-icon ui-icon-plus-minus-big-open"></span>
</a>
<div class="ui-helper-reset" aria-live="assertive">
<div aria-hidden="false" id="cddInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
<div id="cddDesc">Putative conserved domains have been detected, click on the image below for detailed results.</div>        
<a class="hidden shown" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi?SEQUENCE=53758644&amp;FULL" target="CD_Search_data_">
<img alt="CD search result summary" src="blastp%20of%20m.caps_files/wrpsb.png" border="0">
</a> 
</div>
</div><!--ARIA-->

<div id="graphic" class="hidden shown">
<h3>Distribution of 100 Blast Hits on the Query Sequence
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a></h3>
<div class="ui-helper-reset" aria-live="assertive">
<p aria-hidden="true" id="ovrInfo" class="helpbox ui-ncbitoggler-slave ui-widget ui-ncbitoggler">
An overview of the database sequences aligned to the query sequence is 
shown. The score of each alignment is indicated by one of five 
different colors, which divides the range of scores into five groups. 
Multiple alignments on the same database sequence are connected 
by a striped line. <span class="hl">Mousing over</span> a hit sequence causes the definition and score to be shown in the window at the top, 
<span class="hl">clicking</span> on a hit sequence takes the user to the associated alignments.
New:
This graphic is an overview of database sequences aligned to the query sequence.
Alignments are color-coded by score, within one of five score ranges.  
Multiple alignments on the same database sequence are connected by a dashed line.
<span class="hl">Mousing</span> over an alignment shows the alignment definition and score in the box at the top. 
<span class="hl">Clicking</span> an alignment displays the alignment detail.
</p>
</div><!-- ARIA -->
<center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/score.gif" height="40" width="500"></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/query_no_scale.gif" height="10" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="51"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="81"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="81"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="81"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="81"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="81"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="81"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/scale.gif" height="10" width="2"></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/1.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="63"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/1.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="53"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/2.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="53"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/3.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="53"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/4.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="53"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/5.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="53"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/6.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/0.gif" height="13" width="10"></td>
</tr></tbody></table>
<br><table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#53804883"><img alt="score 1247" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_113281 methanol dehydrogenase protein, large subunit [Methyloc.. S=1247 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#333985955"><img alt="score 1036" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_004515165 PQQ-dependent dehydrogenase [Methylomonas methanica MC0.. S=1036 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#334112188"><img alt="score 1033" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_08486452 PQQ-dependent dehydrogenase, methanol/ethanol family [M.. S=1033 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#357406770"><img alt="score 1027" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_004918694 Methanol dehydrogenase, large subunit [Methylomicrobium.. S=1027 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#344943988"><img alt="score 1026" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_08783274 PQQ-dependent dehydrogenase, methanol/ethanol family [M.. S=1026 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="7"></td>
<td align="LEFT" valign="CENTER"><a href="#258590933"><img alt="score 931" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='CBE67228 Methanol dehydrogenase large subunit (mxaF1) [NC10 bact.. S=931 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="493"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#323138709"><img alt="score 909" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_08073775 PQQ-dependent dehydrogenase, methanol/ethanol family [M.. S=909 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="3"></td>
<td align="LEFT" valign="CENTER"><a href="#170762582"><img alt="score 899" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ACB32192 MxaF [uncultured bacterium 16A2] S=899 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="497"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#170750600"><img alt="score 899" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_001756860 methanol/ethanol family PQQ-dependent dehydrogenase [Me.. S=899 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="11"></td>
<td align="LEFT" valign="CENTER"><a href="#240140966"><img alt="score 897" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_002965446 methanol dehydrogenase subunit 1 precursor (MDH large a.. S=897 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="489"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#296446547"><img alt="score 895" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_06888489 PQQ-dependent dehydrogenase, methanol/ethanol family [M.. S=895 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#115525144"><img alt="score 892" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_782055 Pyrrolo-quinoline quinone [Rhodopseudomonas palustris B.. S=892 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="4"></td>
<td align="LEFT" valign="CENTER"><a href="#217976659"><img alt="score 892" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_002360806 PQQ-dependent dehydrogenase [Methylocella silvestris BL.. S=892 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="496"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="22"></td>
<td align="LEFT" valign="CENTER"><a href="#163853547"><img alt="score 890" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_001641590 methanol/ethanol family PQQ-dependent dehydrogenase [Me.. S=890 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="478"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="23"></td>
<td align="LEFT" valign="CENTER"><a href="#238695868"><img alt="score 888" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ACR55074 methanol dehydrogenase large subunit-like protein [Meth.. S=888 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="477"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="23"></td>
<td align="LEFT" valign="CENTER"><a href="#14719762"><img alt="score 887" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='1H4I_A Chain A, Methylobacterium Extorquens Methanol Dehydroge.. S=887 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="477"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="2"></td>
<td align="LEFT" valign="CENTER"><a href="#121608793"><img alt="score 887" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_996600 Pyrrolo-quinoline quinone [Verminephrobacter eiseniae E.. S=887 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="498"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#357426237"><img alt="score 887" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='CBS89137 Methanol dehydrogenase, large (alpha) subunit [Azospiri.. S=887 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="20"></td>
<td align="LEFT" valign="CENTER"><a href="#220914893"><img alt="score 887" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_002490201 PQQ-dependent dehydrogenase, methanol/ethanol family [M.. S=887 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="480"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="8"></td>
<td align="LEFT" valign="CENTER"><a href="#119385717"><img alt="score 887" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_916772 Pyrrolo-quinoline quinone [Paracoccus denitrificans PD1.. S=887 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="492"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="23"></td>
<td align="LEFT" valign="CENTER"><a href="#58177134"><img alt="score 885" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='1W6S_A Chain A, The High Resolution Structure Of Methanol Dehy.. S=885 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="477"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="23"></td>
<td align="LEFT" valign="CENTER"><a href="#15826668"><img alt="score 885" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='1H4J_A Chain A, Methylobacterium Extorquens Methanol Dehydroge.. S=885 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="477"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="22"></td>
<td align="LEFT" valign="CENTER"><a href="#298294137"><img alt="score 885" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_003696076 PQQ-dependent dehydrogenase [Starkeya novella DSM 506] S=885 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="478"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="22"></td>
<td align="LEFT" valign="CENTER"><a href="#118578"><img alt="score 885" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='P15279 RecName: Full=Methanol dehydrogenase [cytochrome c] sub.. S=885 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="478"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="15"></td>
<td align="LEFT" valign="CENTER"><a href="#340030338"><img alt="score 882" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_08666401 Pyrrolo-quinoline quinone [Paracoccus sp. TRP] S=882 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="485"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="23"></td>
<td align="LEFT" valign="CENTER"><a href="#188583819"><img alt="score 882" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_001927264 PQQ-dependent dehydrogenase [Methylobacterium populi BJ.. S=882 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="477"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#338737333"><img alt="score 882" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_004674295 methanol dehydrogenase subunit alpha [Hyphomicrobium sp.. S=882 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="8"></td>
<td align="LEFT" valign="CENTER"><a href="#118581"><img alt="score 881" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='P12293 RecName: Full=Methanol dehydrogenase [cytochrome c] sub.. S=881 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="492"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="16"></td>
<td align="LEFT" valign="CENTER"><a href="#90423413"><img alt="score 879" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_531783 Pyrrolo-quinoline quinone [Rhodopseudomonas palustris B.. S=879 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="484"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="9"></td>
<td align="LEFT" valign="CENTER"><a href="#335042021"><img alt="score 876" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_08535048 glucose dehydrogenase [Methylophaga aminisulfidivorans .. S=876 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="491"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="23"></td>
<td align="LEFT" valign="CENTER"><a href="#34810619"><img alt="score 874" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='1LRW_A Chain A, Crystal Structure Of Methanol Dehydrogenase Fr.. S=874 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="477"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="9"></td>
<td align="LEFT" valign="CENTER"><a href="#254491170"><img alt="score 869" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_05104351 PQQ-dependent dehydrogenase, methanol/ethanol family [M.. S=869 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="491"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#2588997"><img alt="score 866" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='BAA23272 methanol dehydrogenase alpha subunit [Hyphomicrobium me.. S=866 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="4"></td>
<td align="LEFT" valign="CENTER"><a href="#114327008"><img alt="score 863" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_744165 methanol dehydrogenase subunit 1 [Granulibacter bethesd.. S=863 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="496"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#300022845"><img alt="score 862" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_003755456 methanol/ethanol family PQQ-dependent dehydrogenase [Hy.. S=862 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="36"></td>
<td align="LEFT" valign="CENTER"><a href="#335421155"><img alt="score 861" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_08552182 PQQ-dependent dehydrogenase, methanol/ethanol family pr.. S=861 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="464"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#154520215"><img alt="score 858" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ABS82782 methanol dehydrogenase large subunit [uncultured Methyl.. S=858 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="23"></td>
<td align="LEFT" valign="CENTER"><a href="#114793655"><img alt="score 853" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='2D0V_A Chain A, Crystal Structure Of Methanol Dehydrogenase Fr.. S=853 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="477"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#253998446"><img alt="score 843" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_003050509 PQQ-dependent dehydrogenase [Methylovorus glucosetrophu.. S=843 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="47"></td>
<td align="LEFT" valign="CENTER"><a href="#177826804"><img alt="score 837" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ACB73291 PQQ-linked methanol dehydrogenase large subunit [Burkho.. S=837 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="450"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#7258334"><img alt="score 822" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='AAD56237 methanol dehydrogenase large subunit [Methylovorus sp. .. S=822 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="6"></td>
<td align="LEFT" valign="CENTER"><a href="#20271259"><img alt="score 818" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='AAM18567 large subunit of methanol dehydrogenase [Methylobacillu.. S=818 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="494"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="6"></td>
<td align="LEFT" valign="CENTER"><a href="#91776396"><img alt="score 818" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_546152 Pyrrolo-quinoline quinone [Methylobacillus flagellatus .. S=818 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="494"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="22"></td>
<td align="LEFT" valign="CENTER"><a href="#25014056"><img alt="score 780" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='P38539 RecName: Full=Methanol dehydrogenase [cytochrome c] sub.. S=780 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="478"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="23"></td>
<td align="LEFT" valign="CENTER"><a href="#1942860"><img alt="score 778" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='4AAH_A Chain A, Methanol Dehydrogenase From Methylophilus W3a1 S=778 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="477"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="9"></td>
<td align="LEFT" valign="CENTER"><a href="#186471236"><img alt="score 647" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_001862554 methanol/ethanol family PQQ-dependent dehydrogenase [Bu.. S=647 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="491"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="9"></td>
<td align="LEFT" valign="CENTER"><a href="#323528262"><img alt="score 645" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_004230414 PQQ-dependent dehydrogenase [Burkholderia sp. CCGE1001] S=645 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="491"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#85707427"><img alt="score 644" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_01038508 putative methanol dehydrogenase protein, large subunit .. S=644 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="10"></td>
<td align="LEFT" valign="CENTER"><a href="#347735130"><img alt="score 643" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_08868072 methanol dehydrogenase subunit 1 [Azospirillum amazonen.. S=643 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="490"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="9"></td>
<td align="LEFT" valign="CENTER"><a href="#296161485"><img alt="score 642" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_06844291 PQQ-dependent dehydrogenase, methanol/ethanol family [B.. S=642 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="491"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="9"></td>
<td align="LEFT" valign="CENTER"><a href="#170690091"><img alt="score 642" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_02881258 PQQ-dependent dehydrogenase, methanol/ethanol family [B.. S=642 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="491"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="9"></td>
<td align="LEFT" valign="CENTER"><a href="#91777706"><img alt="score 641" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_552914 methanol dehydrogenase-like protein (xoxF) [Burkholderi.. S=641 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="491"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#114328586"><img alt="score 638" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_745743 methanol dehydrogenase subunit 1 [Granulibacter bethesd.. S=638 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="11"></td>
<td align="LEFT" valign="CENTER"><a href="#218533308"><img alt="score 637" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_002424123 PQQ-dependent dehydrogenase, methanol/ethanol family [M.. S=637 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="489"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="9"></td>
<td align="LEFT" valign="CENTER"><a href="#307727456"><img alt="score 635" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='YP_003910669 PQQ-dependent dehydrogenase, methanol/ethanol family [B.. S=635 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="491"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="7"></td>
<td align="LEFT" valign="CENTER"><a href="#209522393"><img alt="score 635" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='ZP_03271004 PQQ-dependent dehydrogenase, methanol/ethanol family [B.. S=635 E=0'" src="blastp%20of%20m.caps_files/red.gif" border="0" height="4" width="493"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="blastp%20of%20m.caps_files/white.gif" height="4" width="550"></td></tr></tbody></table>
</td></tr></tbody></table>
</center><hr>
</div><!--/#graphic-->
</div><!-- graphicInfo -->
</div><!-- ARIA -->
</div>
<!--HITMATRIX_VIEW - only for bl2seq -->

<!--<h2 class="">Descriptions</h2>-->
<div id="dscrView" class="hidden shown">
<h2 class="resArr">
<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showDescr" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="descrInfo" title="Show/hide Descriptions">
<span class="ui-ncbitoggler-master-text">Descriptions</span>
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</a>
</h2>
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<div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
Legend for links to other resources: 
<img alt="UniGene" src="blastp%20of%20m.caps_files/U.gif" border="0" height="16" width="16"> UniGene  
<img alt="GEO" src="blastp%20of%20m.caps_files/E.gif" border="0" height="16" width="16"> GEO  
<img alt="Gene" src="blastp%20of%20m.caps_files/G.gif" border="0" height="16" width="16"> Gene  
<img alt="Structure" src="blastp%20of%20m.caps_files/str_link.gif" border="0" height="16" width="16"> Structure  
<img alt="Map Viewer" src="blastp%20of%20m.caps_files/M.gif" border="0" height="16" width="16"> Map Viewer
<img alt="PubChem BioAssay" src="blastp%20of%20m.caps_files/Bioassay.gif" border="0" height="16" width="16"> PubChem BioAssay <!-- legend to links to other resources -->
<a name="sort_mark"></a>


<div id="descriptions" class="blRes">
<!--<pre> -->
<!--<div id="desctbl">-->
<table class="defln">
<caption>Sequences producing significant alignments:</caption>
<thead>
<tr class="first">
  <th id="c1">Accession</th>
  <th class="dflnDth" id="c2">Description</th>
  <th class="" id="c3">
  <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;CDD_SEARCH_STATE=4&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NEW_VIEW=yes&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Proteins&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=CJ3JAY4J013&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=3&amp;DISPLAY_SORT=1&amp;HSP_SORT=1#sort_mark" title="Sort by max score">Max score</a>
  </th>
  <th class="" id="c4">
  <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;CDD_SEARCH_STATE=4&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NEW_VIEW=yes&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Proteins&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=CJ3JAY4J013&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=3&amp;DISPLAY_SORT=2&amp;HSP_SORT=1#sort_mark" title="Sort by total score">Total score</a>
  </th>
  <th class="" id="c5">
  <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;CDD_SEARCH_STATE=4&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NEW_VIEW=yes&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Proteins&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=CJ3JAY4J013&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=3&amp;DISPLAY_SORT=4&amp;HSP_SORT=0#sort_mark" title="Sort by query coverage">Query coverage</a>
  </th>
  <th class="sel" id="c6">
  <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;CDD_SEARCH_STATE=4&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NEW_VIEW=yes&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Proteins&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=CJ3JAY4J013&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=3&amp;DISPLAY_SORT=0&amp;HSP_SORT=0#sort_mark" title="Sort by E value">E value</a>
  </th>
  
              
  <th id="c9">Links</th>    
</tr>
</thead>
<tbody>
<tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/53804883?report=genbank&amp;log$=prottop&amp;blast_rank=1&amp;RID=CJ3JAY4J013" title="Show report for YP_113281.1">YP_113281.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase protein, large
 subunit [Methylococcus capsulatus str. Bath] &gt;gb|AAU92935.1| 
methanol dehydrogenase protein, large subunit [Methylococcus capsulatus 
str. Bath]</div></td>
<td><a href="#53804883" title="Show alignment for YP_113281.1">1247</a></td>
<td>1247</td>
<td>100%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=53804883[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=1"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_113281.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/333985955?report=genbank&amp;log$=prottop&amp;blast_rank=2&amp;RID=CJ3JAY4J013" title="Show report for YP_004515165.1">YP_004515165.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Methylomonas methanica MC09] &gt;gb|AEG02666.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylomonas methanica MC09]</div></td>
<td><a href="#333985955" title="Show alignment for YP_004515165.1">1036</a></td>
<td>1036</td>
<td>100%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=333985955[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=2"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004515165.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/334112188?report=genbank&amp;log$=prottop&amp;blast_rank=3&amp;RID=CJ3JAY4J013" title="Show report for ZP_08486452.1">ZP_08486452.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylomicrobium album BG8] &gt;gb|ABE77336.1| 
methanol dehydrogenase large subunit [Methylomicrobium sp. HG-1] 
&gt;gb|EGL02539.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylomicrobium album BG8]</div></td>
<td><a href="#334112188" title="Show alignment for ZP_08486452.1">1033</a></td>
<td>1033</td>
<td>100%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/357406770?report=genbank&amp;log$=prottop&amp;blast_rank=4&amp;RID=CJ3JAY4J013" title="Show report for YP_004918694.1">YP_004918694.1</a></td>
<td class="lim l"><div class="lim">Methanol dehydrogenase, large subunit
 [Methylomicrobium alcaliphilum] &gt;emb|CCE25111.1| Methanol 
dehydrogenase, large subunit [Methylomicrobium alcaliphilum]</div></td>
<td><a href="#357406770" title="Show alignment for YP_004918694.1">1027</a></td>
<td>1027</td>
<td>100%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/344943988?report=genbank&amp;log$=prottop&amp;blast_rank=5&amp;RID=CJ3JAY4J013" title="Show report for ZP_08783274.1">ZP_08783274.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylobacter tundripaludum SV96] 
&gt;gb|EGW19919.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylobacter tundripaludum SV96]</div></td>
<td><a href="#344943988" title="Show alignment for ZP_08783274.1">1026</a></td>
<td>1026</td>
<td>100%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/258590933?report=genbank&amp;log$=prottop&amp;blast_rank=6&amp;RID=CJ3JAY4J013" title="Show report for CBE67228.1">CBE67228.1</a></td>
<td class="lim l"><div class="lim">Methanol dehydrogenase large subunit (mxaF1) [NC10 bacterium 'Dutch sediment']</div></td>
<td><a href="#258590933" title="Show alignment for CBE67228.1"> 931</a></td>
<td> 931</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/323138709?report=genbank&amp;log$=prottop&amp;blast_rank=7&amp;RID=CJ3JAY4J013" title="Show report for ZP_08073775.1">ZP_08073775.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylocystis sp. ATCC 49242] 
&gt;gb|EFX98599.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylocystis sp. ATCC 49242]</div></td>
<td><a href="#323138709" title="Show alignment for ZP_08073775.1"> 909</a></td>
<td> 909</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/170762582?report=genbank&amp;log$=prottop&amp;blast_rank=8&amp;RID=CJ3JAY4J013" title="Show report for ACB32192.1">ACB32192.1</a></td>
<td class="lim l"><div class="lim">MxaF [uncultured bacterium 16A2]</div></td>
<td><a href="#170762582" title="Show alignment for ACB32192.1"> 899</a></td>
<td> 899</td>
<td>99%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/170750600?report=genbank&amp;log$=prottop&amp;blast_rank=9&amp;RID=CJ3JAY4J013" title="Show report for YP_001756860.1">YP_001756860.1</a></td>
<td class="lim l"><div class="lim">methanol/ethanol family PQQ-dependent
 dehydrogenase [Methylobacterium radiotolerans JCM 2831] 
&gt;gb|ACB26177.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylobacterium radiotolerans JCM 2831]</div></td>
<td><a href="#170750600" title="Show alignment for YP_001756860.1"> 899</a></td>
<td> 899</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=170750600[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=9"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001756860.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/240140966?report=genbank&amp;log$=prottop&amp;blast_rank=10&amp;RID=CJ3JAY4J013" title="Show report for YP_002965446.1">YP_002965446.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase subunit 1 
precursor (MDH large alpha subunit) (MEDH) [Methylobacterium extorquens 
AM1] &gt;ref|YP_003070571.1| methanol dehydrogenase subunit 1 
[Methylobacterium extorquens DM4] &gt;gb|ACS42169.1| Methanol 
dehydrogenase subunit 1 precursor (MDH large alpha subunit) (MEDH) 
[Methylobacterium extorquens AM1] &gt;emb|CAX26759.1| Methanol 
dehydrogenase subunit 1 precursor (MDH large alpha subunit) (MEDH) 
[Methylobacterium extorquens DM4]</div></td>
<td><a href="#240140966" title="Show alignment for YP_002965446.1"> 897</a></td>
<td> 897</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=240140966[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=10"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002965446.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/296446547?report=genbank&amp;log$=prottop&amp;blast_rank=11&amp;RID=CJ3JAY4J013" title="Show report for ZP_06888489.1">ZP_06888489.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylosinus trichosporium OB3b] 
&gt;gb|EFH02986.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylosinus trichosporium OB3b]</div></td>
<td><a href="#296446547" title="Show alignment for ZP_06888489.1"> 895</a></td>
<td> 895</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/115525144?report=genbank&amp;log$=prottop&amp;blast_rank=12&amp;RID=CJ3JAY4J013" title="Show report for YP_782055.1">YP_782055.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Rhodopseudomonas palustris BisA53] &gt;gb|ABJ07075.1| Pyrrolo-quinoline
 quinone [Rhodopseudomonas palustris BisA53]</div></td>
<td><a href="#115525144" title="Show alignment for YP_782055.1"> 892</a></td>
<td> 892</td>
<td>100%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=115525144[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=12"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_782055.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/217976659?report=genbank&amp;log$=prottop&amp;blast_rank=13&amp;RID=CJ3JAY4J013" title="Show report for YP_002360806.1">YP_002360806.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Methylocella silvestris BL2] &gt;gb|ACK49444.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylocella silvestris BL2]</div></td>
<td><a href="#217976659" title="Show alignment for YP_002360806.1"> 892</a></td>
<td> 892</td>
<td>99%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=217976659[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=13"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002360806.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/163853547?report=genbank&amp;log$=prottop&amp;blast_rank=14&amp;RID=CJ3JAY4J013" title="Show report for YP_001641590.1">YP_001641590.1</a></td>
<td class="lim l"><div class="lim">methanol/ethanol family PQQ-dependent
 dehydrogenase [Methylobacterium extorquens PA1] &gt;ref|YP_002423222.1|
 methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
chloromethanicum CM4] &gt;sp|P16027.1|DHM1_METEA RecName: Full=Methanol 
dehydrogenase [cytochrome c] subunit 1; AltName: Full=MDH large subunit 
alpha; AltName: Full=MEDH; Flags: Precursor &gt;gb|AAA25380.1| methanol 
dehydrogenase precursor (moxF) [Methylobacterium extorquens] 
&gt;gb|ABY32519.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylobacterium extorquens PA1] &gt;gb|ACK85294.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylobacterium 
chloromethanicum CM4]</div></td>
<td><a href="#163853547" title="Show alignment for YP_001641590.1"> 890</a></td>
<td> 890</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=163853547[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=14"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001641590.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/238695868?report=genbank&amp;log$=prottop&amp;blast_rank=15&amp;RID=CJ3JAY4J013" title="Show report for ACR55074.1">ACR55074.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large subunit-like protein [Methylobacterium sp. MB200]</div></td>
<td><a href="#238695868" title="Show alignment for ACR55074.1"> 888</a></td>
<td> 888</td>
<td>95%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/14719762?report=genbank&amp;log$=prottop&amp;blast_rank=16&amp;RID=CJ3JAY4J013" title="Show report for 1H4I_A">1H4I_A</a></td>
<td class="lim l"><div class="lim">Chain A, Methylobacterium Extorquens 
Methanol Dehydrogenase &gt;pdb|1H4I|C Chain C, Methylobacterium 
Extorquens Methanol Dehydrogenase</div></td>
<td><a href="#14719762" title="Show alignment for 1H4I_A"> 887</a></td>
<td> 887</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=14719762&amp;hit=14719762&amp;query_gi=53758644&amp;blast_view=onegroup&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structuretop&amp;blast_rank=16"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1H4I_A" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/121608793?report=genbank&amp;log$=prottop&amp;blast_rank=17&amp;RID=CJ3JAY4J013" title="Show report for YP_996600.1">YP_996600.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Verminephrobacter eiseniae EF01-2] &gt;gb|ABM57582.1| Pyrrolo-quinoline
 quinone [Verminephrobacter eiseniae EF01-2]</div></td>
<td><a href="#121608793" title="Show alignment for YP_996600.1"> 887</a></td>
<td> 887</td>
<td>99%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=121608793[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=17"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_996600.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/357426237?report=genbank&amp;log$=prottop&amp;blast_rank=18&amp;RID=CJ3JAY4J013" title="Show report for CBS89137.1">CBS89137.1</a></td>
<td class="lim l"><div class="lim">Methanol dehydrogenase, large (alpha) subunit [Azospirillum lipoferum 4B]</div></td>
<td><a href="#357426237" title="Show alignment for CBS89137.1"> 887</a></td>
<td> 887</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/220914893?report=genbank&amp;log$=prottop&amp;blast_rank=19&amp;RID=CJ3JAY4J013" title="Show report for YP_002490201.1">YP_002490201.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylobacterium nodulans ORS 2060] 
&gt;gb|AAG49450.1|AF220764_1 methanol dehydrogenase MxaF 
[Methylobacterium nodulans ORS 2060] &gt;gb|ACL63034.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylobacterium nodulans ORS 
2060]</div></td>
<td><a href="#220914893" title="Show alignment for YP_002490201.1"> 887</a></td>
<td> 887</td>
<td>96%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=220914893[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=19"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002490201.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/119385717?report=genbank&amp;log$=prottop&amp;blast_rank=20&amp;RID=CJ3JAY4J013" title="Show report for YP_916772.1">YP_916772.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone [Paracoccus
 denitrificans PD1222] &gt;gb|ABL71076.1| Pyrrolo-quinoline quinone 
[Paracoccus denitrificans PD1222]</div></td>
<td><a href="#119385717" title="Show alignment for YP_916772.1"> 887</a></td>
<td> 887</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=119385717[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=20"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_916772.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/58177134?report=genbank&amp;log$=prottop&amp;blast_rank=21&amp;RID=CJ3JAY4J013" title="Show report for 1W6S_A">1W6S_A</a></td>
<td class="lim l"><div class="lim">Chain A, The High Resolution 
Structure Of Methanol Dehydrogenase From Methylobacterium Extorquens 
&gt;pdb|1W6S|C Chain C, The High Resolution Structure Of Methanol 
Dehydrogenase From Methylobacterium Extorquens</div></td>
<td><a href="#58177134" title="Show alignment for 1W6S_A"> 885</a></td>
<td> 885</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=58177134&amp;hit=58177134&amp;query_gi=53758644&amp;blast_view=onegroup&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structuretop&amp;blast_rank=21"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1W6S_A" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/15826668?report=genbank&amp;log$=prottop&amp;blast_rank=22&amp;RID=CJ3JAY4J013" title="Show report for 1H4J_A">1H4J_A</a></td>
<td class="lim l"><div class="lim">Chain A, Methylobacterium Extorquens 
Methanol Dehydrogenase D303e Mutant &gt;pdb|1H4J|C Chain C, 
Methylobacterium Extorquens Methanol Dehydrogenase D303e Mutant 
&gt;pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol 
Dehydrogenase D303e Mutant &gt;pdb|1H4J|G Chain G, Methylobacterium 
Extorquens Methanol Dehydrogenase D303e Mutant</div></td>
<td><a href="#15826668" title="Show alignment for 1H4J_A"> 885</a></td>
<td> 885</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=15826668&amp;hit=15826668&amp;query_gi=53758644&amp;blast_view=onegroup&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structuretop&amp;blast_rank=22"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1H4J_A" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/298294137?report=genbank&amp;log$=prottop&amp;blast_rank=23&amp;RID=CJ3JAY4J013" title="Show report for YP_003696076.1">YP_003696076.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase [Starkeya
 novella DSM 506] &gt;gb|ADH91457.1| PQQ-dependent dehydrogenase, 
methanol/ethanol family [Starkeya novella DSM 506]</div></td>
<td><a href="#298294137" title="Show alignment for YP_003696076.1"> 885</a></td>
<td> 885</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=298294137[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=23"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003696076.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/118578?report=genbank&amp;log$=prottop&amp;blast_rank=24&amp;RID=CJ3JAY4J013" title="Show report for P15279.1">P15279.1</a></td>
<td class="lim l"><div class="lim">RecName: Full=Methanol dehydrogenase 
[cytochrome c] subunit 1; AltName: Full=MDH large subunit alpha; 
AltName: Full=MEDH; Flags: Precursor &gt;gb|AAA50289.1| methanol 
dehydrogenase [Methylobacterium organophilum]</div></td>
<td><a href="#118578" title="Show alignment for P15279.1"> 885</a></td>
<td> 885</td>
<td>95%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/340030338?report=genbank&amp;log$=prottop&amp;blast_rank=25&amp;RID=CJ3JAY4J013" title="Show report for ZP_08666401.1">ZP_08666401.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone [Paracoccus sp. TRP]</div></td>
<td><a href="#340030338" title="Show alignment for ZP_08666401.1"> 882</a></td>
<td> 882</td>
<td>97%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/188583819?report=genbank&amp;log$=prottop&amp;blast_rank=26&amp;RID=CJ3JAY4J013" title="Show report for YP_001927264.1">YP_001927264.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Methylobacterium populi BJ001] &gt;gb|ACB82729.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylobacterium populi BJ001]</div></td>
<td><a href="#188583819" title="Show alignment for YP_001927264.1"> 882</a></td>
<td> 882</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=188583819[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=26"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001927264.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/338737333?report=genbank&amp;log$=prottop&amp;blast_rank=27&amp;RID=CJ3JAY4J013" title="Show report for YP_004674295.1">YP_004674295.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase subunit alpha 
[Hyphomicrobium sp. MC1] &gt;emb|CCB63719.1| methanol dehydrogenase, 
alpha subunit precursor [Hyphomicrobium sp. MC1]</div></td>
<td><a href="#338737333" title="Show alignment for YP_004674295.1"> 882</a></td>
<td> 882</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=338737333[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=27"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004674295.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/118581?report=genbank&amp;log$=prottop&amp;blast_rank=28&amp;RID=CJ3JAY4J013" title="Show report for P12293.1">P12293.1</a></td>
<td class="lim l"><div class="lim">RecName: Full=Methanol dehydrogenase 
[cytochrome c] subunit 1; AltName: Full=MDH large subunit alpha; 
AltName: Full=MEDH; Flags: Precursor &gt;gb|AAA88366.1| methanol 
dehydrogenase [Paracoccus denitrificans]</div></td>
<td><a href="#118581" title="Show alignment for P12293.1"> 881</a></td>
<td> 881</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/90423413?report=genbank&amp;log$=prottop&amp;blast_rank=29&amp;RID=CJ3JAY4J013" title="Show report for YP_531783.1">YP_531783.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Rhodopseudomonas palustris BisB18] &gt;gb|ABD87464.1| Pyrrolo-quinoline
 quinone [Rhodopseudomonas palustris BisB18]</div></td>
<td><a href="#90423413" title="Show alignment for YP_531783.1"> 879</a></td>
<td> 879</td>
<td>96%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=90423413[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=29"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_531783.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/335042021?report=genbank&amp;log$=prottop&amp;blast_rank=30&amp;RID=CJ3JAY4J013" title="Show report for ZP_08535048.1">ZP_08535048.1</a></td>
<td class="lim l"><div class="lim">glucose dehydrogenase [Methylophaga 
aminisulfidivorans MP] &gt;gb|ABN49105.1| methanol dehydrogenase large 
subunit [Methylophaga aminisulfidivorans MP] &gt;gb|EGL54517.1| glucose 
dehydrogenase [Methylophaga aminisulfidivorans MP]</div></td>
<td><a href="#335042021" title="Show alignment for ZP_08535048.1"> 876</a></td>
<td> 876</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/34810619?report=genbank&amp;log$=prottop&amp;blast_rank=31&amp;RID=CJ3JAY4J013" title="Show report for 1LRW_A">1LRW_A</a></td>
<td class="lim l"><div class="lim">Chain A, Crystal Structure Of 
Methanol Dehydrogenase From P. Denitrificans &gt;pdb|1LRW|C Chain C, 
Crystal Structure Of Methanol Dehydrogenase From P. Denitrificans</div></td>
<td><a href="#34810619" title="Show alignment for 1LRW_A"> 874</a></td>
<td> 874</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=34810619&amp;hit=34810619&amp;query_gi=53758644&amp;blast_view=onegroup&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structuretop&amp;blast_rank=31"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1LRW_A" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/254491170?report=genbank&amp;log$=prottop&amp;blast_rank=32&amp;RID=CJ3JAY4J013" title="Show report for ZP_05104351.1">ZP_05104351.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylophaga thiooxidans DMS010] 
&gt;gb|EEF79951.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylophaga thiooxydans DMS010]</div></td>
<td><a href="#254491170" title="Show alignment for ZP_05104351.1"> 869</a></td>
<td> 869</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/2588997?report=genbank&amp;log$=prottop&amp;blast_rank=33&amp;RID=CJ3JAY4J013" title="Show report for BAA23272.1">BAA23272.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase alpha subunit [Hyphomicrobium methylovorum]</div></td>
<td><a href="#2588997" title="Show alignment for BAA23272.1"> 866</a></td>
<td> 866</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/114327008?report=genbank&amp;log$=prottop&amp;blast_rank=34&amp;RID=CJ3JAY4J013" title="Show report for YP_744165.1">YP_744165.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase subunit 1 
[Granulibacter bethesdensis CGDNIH1] &gt;gb|ABI61242.1| methanol 
dehydrogenase subunit 1 [Granulibacter bethesdensis CGDNIH1]</div></td>
<td><a href="#114327008" title="Show alignment for YP_744165.1"> 863</a></td>
<td> 863</td>
<td>99%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114327008[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=34"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_744165.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/300022845?report=genbank&amp;log$=prottop&amp;blast_rank=35&amp;RID=CJ3JAY4J013" title="Show report for YP_003755456.1">YP_003755456.1</a></td>
<td class="lim l"><div class="lim">methanol/ethanol family PQQ-dependent
 dehydrogenase [Hyphomicrobium denitrificans ATCC 51888] 
&gt;gb|ADJ23135.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Hyphomicrobium denitrificans ATCC 51888]</div></td>
<td><a href="#300022845" title="Show alignment for YP_003755456.1"> 862</a></td>
<td> 862</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=300022845[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=35"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003755456.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/335421155?report=genbank&amp;log$=prottop&amp;blast_rank=36&amp;RID=CJ3JAY4J013" title="Show report for ZP_08552182.1">ZP_08552182.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family protein [Salinisphaera shabanensis E1L3A] 
&gt;ref|ZP_08552306.1| PQQ-dependent dehydrogenase, methanol/ethanol 
family protein [Salinisphaera shabanensis E1L3A] &gt;gb|EGM30480.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family protein 
[Salinisphaera shabanensis E1L3A] &gt;gb|EGM30966.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family protein [Salinisphaera 
shabanensis E1L3A]</div></td>
<td><a href="#335421155" title="Show alignment for ZP_08552182.1"> 861</a></td>
<td> 861</td>
<td>92%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/154520215?report=genbank&amp;log$=prottop&amp;blast_rank=37&amp;RID=CJ3JAY4J013" title="Show report for ABS82782.1">ABS82782.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large subunit [uncultured Methylophaga sp.]</div></td>
<td><a href="#154520215" title="Show alignment for ABS82782.1"> 858</a></td>
<td> 858</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/114793655?report=genbank&amp;log$=prottop&amp;blast_rank=38&amp;RID=CJ3JAY4J013" title="Show report for 2D0V_A">2D0V_A</a></td>
<td class="lim l"><div class="lim">Chain A, Crystal Structure Of 
Methanol Dehydrogenase From Hyphomicrobium Denitrificans &gt;pdb|2D0V|D 
Chain D, Crystal Structure Of Methanol Dehydrogenase From Hyphomicrobium
 Denitrificans &gt;pdb|2D0V|I Chain I, Crystal Structure Of Methanol 
Dehydrogenase From Hyphomicrobium Denitrificans &gt;dbj|BAE16958.1| 
methanol dehydrogenase large subunit [Hyphomicrobium denitrificans]</div></td>
<td><a href="#114793655" title="Show alignment for 2D0V_A"> 853</a></td>
<td> 853</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=114793655&amp;hit=114793655&amp;query_gi=53758644&amp;blast_view=onegroup&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structuretop&amp;blast_rank=38"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2D0V_A" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/253998446?report=genbank&amp;log$=prottop&amp;blast_rank=39&amp;RID=CJ3JAY4J013" title="Show report for YP_003050509.1">YP_003050509.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Methylovorus glucosetrophus SIP3-4] &gt;ref|YP_004039179.1| 
pqq-dependent dehydrogenase [Methylovorus sp. MP688] &gt;gb|ACT49982.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family [Methylovorus 
glucosetrophus SIP3-4] &gt;gb|ADQ83943.1| PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylovorus sp. MP688]</div></td>
<td><a href="#253998446" title="Show alignment for YP_003050509.1"> 843</a></td>
<td> 843</td>
<td>100%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=253998446[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=39"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003050509.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/177826804?report=genbank&amp;log$=prottop&amp;blast_rank=40&amp;RID=CJ3JAY4J013" title="Show report for ACB73291.1">ACB73291.1</a></td>
<td class="lim l"><div class="lim">PQQ-linked methanol dehydrogenase large subunit [Burkholderiales bacterium RZ18-153]</div></td>
<td><a href="#177826804" title="Show alignment for ACB73291.1"> 837</a></td>
<td> 837</td>
<td>90%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/7258334?report=genbank&amp;log$=prottop&amp;blast_rank=41&amp;RID=CJ3JAY4J013" title="Show report for AAD56237.2">AAD56237.2</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large subunit [Methylovorus sp. SS1]</div></td>
<td><a href="#7258334" title="Show alignment for AAD56237.2"> 822</a></td>
<td> 822</td>
<td>100%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/20271259?report=genbank&amp;log$=prottop&amp;blast_rank=42&amp;RID=CJ3JAY4J013" title="Show report for AAM18567.1">AAM18567.1</a></td>
<td class="lim l"><div class="lim">large subunit of methanol dehydrogenase [Methylobacillus sp. SK-5]</div></td>
<td><a href="#20271259" title="Show alignment for AAM18567.1"> 818</a></td>
<td> 818</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/91776396?report=genbank&amp;log$=prottop&amp;blast_rank=43&amp;RID=CJ3JAY4J013" title="Show report for YP_546152.1">YP_546152.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Methylobacillus flagellatus KT] &gt;gb|ABE50311.1| MxaF, large subunit 
of methanol dehydrogenase [Methylobacillus flagellatus KT]</div></td>
<td><a href="#91776396" title="Show alignment for YP_546152.1"> 818</a></td>
<td> 818</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91776396[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=43"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_546152.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/25014056?report=genbank&amp;log$=prottop&amp;blast_rank=44&amp;RID=CJ3JAY4J013" title="Show report for P38539.2">P38539.2</a></td>
<td class="lim l"><div class="lim">RecName: Full=Methanol dehydrogenase 
[cytochrome c] subunit 1; AltName: Full=MDH large subunit alpha; 
AltName: Full=MEDH &gt;pdb|1G72|A Chain A, Catalytic Mechanism Of 
Quinoprotein Methanol Dehydrogenase: A Theoretical And X-Ray 
Crystallographic Investigation &gt;pdb|1G72|C Chain C, Catalytic 
Mechanism Of Quinoprotein Methanol Dehydrogenase: A Theoretical And 
X-Ray Crystallographic Investigation &gt;gb|AAA83765.1| methanol 
dehydrogenase heavy subunit [Methylophilus methylotrophus]</div></td>
<td><a href="#25014056" title="Show alignment for P38539.2"> 780</a></td>
<td> 780</td>
<td>95%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/1942860?report=genbank&amp;log$=prottop&amp;blast_rank=45&amp;RID=CJ3JAY4J013" title="Show report for 4AAH_A">4AAH_A</a></td>
<td class="lim l"><div class="lim">Chain A, Methanol Dehydrogenase From 
Methylophilus W3a1 &gt;pdb|4AAH|C Chain C, Methanol Dehydrogenase From 
Methylophilus W3a1 &gt;pdb|2AD6|A Chain A, Crystal Structure Of Methanol
 Dehydrogenase From M. W3a1 (Form C) &gt;pdb|2AD6|C Chain C, Crystal 
Structure Of Methanol Dehydrogenase From M. W3a1 (Form C) &gt;pdb|2AD7|A
 Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1 (Form
 C) In The Presence Of Methanol &gt;pdb|2AD7|C Chain C, Crystal 
Structure Of Methanol Dehydrogenase From M. W3a1 (Form C) In The 
Presence Of Methanol &gt;pdb|2AD8|A Chain A, Crystal Structure Of 
Methanol Dehydrogenase From M. W3a1 (Form C) In The Presence Of Ethanol 
&gt;pdb|2AD8|C Chain C, Crystal Structure Of Methanol Dehydrogenase From
 M. W3a1 (Form C) In The Presence Of Ethanol</div></td>
<td><a href="#1942860" title="Show alignment for 4AAH_A"> 778</a></td>
<td> 778</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=1942860&amp;query_gi=53758644&amp;blast_view=onegroup&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structuretop&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 4AAH_A" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/186471236?report=genbank&amp;log$=prottop&amp;blast_rank=46&amp;RID=CJ3JAY4J013" title="Show report for YP_001862554.1">YP_001862554.1</a></td>
<td class="lim l"><div class="lim">methanol/ethanol family PQQ-dependent
 dehydrogenase [Burkholderia phymatum STM815] &gt;gb|ACC75508.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
phymatum STM815]</div></td>
<td><a href="#186471236" title="Show alignment for YP_001862554.1"> 647</a></td>
<td> 647</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=186471236[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=46"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001862554.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/323528262?report=genbank&amp;log$=prottop&amp;blast_rank=47&amp;RID=CJ3JAY4J013" title="Show report for YP_004230414.1">YP_004230414.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Burkholderia sp. CCGE1001] &gt;gb|ADX57354.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Burkholderia sp. CCGE1001]</div></td>
<td><a href="#323528262" title="Show alignment for YP_004230414.1"> 645</a></td>
<td> 645</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=323528262[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=47"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004230414.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/85707427?report=genbank&amp;log$=prottop&amp;blast_rank=48&amp;RID=CJ3JAY4J013" title="Show report for ZP_01038508.1">ZP_01038508.1</a></td>
<td class="lim l"><div class="lim">putative methanol dehydrogenase 
protein, large subunit [Roseovarius sp. 217] &gt;gb|EAQ22963.1| putative
 methanol dehydrogenase protein, large subunit [Roseovarius sp. 217]</div></td>
<td><a href="#85707427" title="Show alignment for ZP_01038508.1"> 644</a></td>
<td> 644</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/347735130?report=genbank&amp;log$=prottop&amp;blast_rank=49&amp;RID=CJ3JAY4J013" title="Show report for ZP_08868072.1">ZP_08868072.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase subunit 1 
[Azospirillum amazonense Y2] &gt;gb|EGY02344.1| methanol dehydrogenase 
subunit 1 [Azospirillum amazonense Y2]</div></td>
<td><a href="#347735130" title="Show alignment for ZP_08868072.1"> 643</a></td>
<td> 643</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/296161485?report=genbank&amp;log$=prottop&amp;blast_rank=50&amp;RID=CJ3JAY4J013" title="Show report for ZP_06844291.1">ZP_06844291.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Burkholderia sp. Ch1-1] &gt;gb|EFG68112.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia sp. 
Ch1-1]</div></td>
<td><a href="#296161485" title="Show alignment for ZP_06844291.1"> 642</a></td>
<td> 642</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/170690091?report=genbank&amp;log$=prottop&amp;blast_rank=51&amp;RID=CJ3JAY4J013" title="Show report for ZP_02881258.1">ZP_02881258.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Burkholderia graminis C4D1M] &gt;gb|EDT12687.1|
 PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
graminis C4D1M]</div></td>
<td><a href="#170690091" title="Show alignment for ZP_02881258.1"> 642</a></td>
<td> 642</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/91777706?report=genbank&amp;log$=prottop&amp;blast_rank=52&amp;RID=CJ3JAY4J013" title="Show report for YP_552914.1">YP_552914.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase-like protein 
(xoxF) [Burkholderia xenovorans LB400] &gt;gb|ABE33564.1| Methanol 
dehydrogenase-like protein (xoxF) [Burkholderia xenovorans LB400]</div></td>
<td><a href="#91777706" title="Show alignment for YP_552914.1"> 641</a></td>
<td> 641</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91777706[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=52"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_552914.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/114328586?report=genbank&amp;log$=prottop&amp;blast_rank=53&amp;RID=CJ3JAY4J013" title="Show report for YP_745743.1">YP_745743.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase subunit 1 
[Granulibacter bethesdensis CGDNIH1] &gt;gb|ABI62820.1| methanol 
dehydrogenase subunit 1 [Granulibacter bethesdensis CGDNIH1]</div></td>
<td><a href="#114328586" title="Show alignment for YP_745743.1"> 638</a></td>
<td> 638</td>
<td>100%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114328586[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=53"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_745743.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/218533308?report=genbank&amp;log$=prottop&amp;blast_rank=54&amp;RID=CJ3JAY4J013" title="Show report for YP_002424123.1">YP_002424123.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylobacterium chloromethanicum CM4] 
&gt;gb|ACK86195.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylobacterium chloromethanicum CM4]</div></td>
<td><a href="#218533308" title="Show alignment for YP_002424123.1"> 637</a></td>
<td> 637</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=218533308[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=54"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002424123.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/307727456?report=genbank&amp;log$=prottop&amp;blast_rank=55&amp;RID=CJ3JAY4J013" title="Show report for YP_003910669.1">YP_003910669.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Burkholderia sp. CCGE1003] &gt;gb|ADN61378.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia sp. 
CCGE1003]</div></td>
<td><a href="#307727456" title="Show alignment for YP_003910669.1"> 635</a></td>
<td> 635</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=307727456[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=55"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003910669.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/209522393?report=genbank&amp;log$=prottop&amp;blast_rank=56&amp;RID=CJ3JAY4J013" title="Show report for ZP_03271004.1">ZP_03271004.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Burkholderia sp. H160] &gt;gb|EDZ97416.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia sp. 
H160]</div></td>
<td><a href="#209522393" title="Show alignment for ZP_03271004.1"> 635</a></td>
<td> 635</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/77463132?report=genbank&amp;log$=prottop&amp;blast_rank=57&amp;RID=CJ3JAY4J013" title="Show report for YP_352636.1">YP_352636.1</a></td>
<td class="lim l"><div class="lim">putative PQQ dehydrogenase protein 
[Rhodobacter sphaeroides 2.4.1] &gt;ref|YP_002525251.1| 
Pyrrolo-quinoline quinone [Rhodobacter sphaeroides KD131] 
&gt;ref|ZP_08412328.1| Pyrrolo-quinoline quinone precursor [Rhodobacter 
sphaeroides WS8N] &gt;gb|ABA78735.1| putative pqq dehydrogenase protein 
[Rhodobacter sphaeroides 2.4.1] &gt;gb|ACM00750.1| Pyrrolo-quinoline 
quinone precursor [Rhodobacter sphaeroides KD131] &gt;gb|EGJ21033.1| 
Pyrrolo-quinoline quinone precursor [Rhodobacter sphaeroides WS8N]</div></td>
<td><a href="#77463132" title="Show alignment for YP_352636.1"> 633</a></td>
<td> 633</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=77463132[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=57"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_352636.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/126462004?report=genbank&amp;log$=prottop&amp;blast_rank=58&amp;RID=CJ3JAY4J013" title="Show report for YP_001043118.1">YP_001043118.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Rhodobacter sphaeroides ATCC 17029] &gt;gb|ABN76346.1| 
Pyrrolo-quinoline quinone [Rhodobacter sphaeroides ATCC 17029]</div></td>
<td><a href="#126462004" title="Show alignment for YP_001043118.1"> 633</a></td>
<td> 633</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=126462004[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=58"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001043118.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/295698891?report=genbank&amp;log$=prottop&amp;blast_rank=59&amp;RID=CJ3JAY4J013" title="Show report for YP_003606784.1">YP_003606784.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Burkholderia sp. CCGE1002] &gt;gb|ADG17273.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia sp. 
CCGE1002]</div></td>
<td><a href="#295698891" title="Show alignment for YP_003606784.1"> 633</a></td>
<td> 633</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=295698891[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=59"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003606784.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/149203282?report=genbank&amp;log$=prottop&amp;blast_rank=60&amp;RID=CJ3JAY4J013" title="Show report for ZP_01880252.1">ZP_01880252.1</a></td>
<td class="lim l"><div class="lim">putative methanol dehydrogenase 
protein, large subunit [Roseovarius sp. TM1035] &gt;gb|EDM31154.1| 
putative methanol dehydrogenase protein, large subunit [Roseovarius sp. 
TM1035]</div></td>
<td><a href="#149203282" title="Show alignment for ZP_01880252.1"> 633</a></td>
<td> 633</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/27381324?report=genbank&amp;log$=prottop&amp;blast_rank=61&amp;RID=CJ3JAY4J013" title="Show report for NP_772853.1">NP_772853.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large 
subunit-like protein [Bradyrhizobium japonicum USDA 110] 
&gt;dbj|BAC51478.1| methanol dehydrogenase large subunit-like protein 
[Bradyrhizobium japonicum USDA 110]</div></td>
<td><a href="#27381324" title="Show alignment for NP_772853.1"> 632</a></td>
<td> 632</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=27381324[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=61"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to NP_772853.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/240139319?report=genbank&amp;log$=prottop&amp;blast_rank=62&amp;RID=CJ3JAY4J013" title="Show report for YP_002963794.1">YP_002963794.1</a></td>
<td class="lim l"><div class="lim">XoxF [Methylobacterium extorquens AM1] &gt;gb|ACS40517.1| XoxF [Methylobacterium extorquens AM1]</div></td>
<td><a href="#240139319" title="Show alignment for YP_002963794.1"> 632</a></td>
<td> 632</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=240139319[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=62"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002963794.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/340027251?report=genbank&amp;log$=prottop&amp;blast_rank=63&amp;RID=CJ3JAY4J013" title="Show report for ZP_08663314.1">ZP_08663314.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone [Paracoccus sp. TRP]</div></td>
<td><a href="#340027251" title="Show alignment for ZP_08663314.1"> 631</a></td>
<td> 631</td>
<td>99%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/146277982?report=genbank&amp;log$=prottop&amp;blast_rank=64&amp;RID=CJ3JAY4J013" title="Show report for YP_001168141.1">YP_001168141.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Rhodobacter sphaeroides ATCC 17025] &gt;gb|ABP70836.1| 
Pyrrolo-quinoline quinone [Rhodobacter sphaeroides ATCC 17025]</div></td>
<td><a href="#146277982" title="Show alignment for YP_001168141.1"> 630</a></td>
<td> 630</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=146277982[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=64"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001168141.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/90420383?report=genbank&amp;log$=prottop&amp;blast_rank=65&amp;RID=CJ3JAY4J013" title="Show report for ZP_01228291.1">ZP_01228291.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase, subunit 1 
[Aurantimonas manganoxydans SI85-9A1] &gt;gb|EAS49467.1| methanol 
dehydrogenase, subunit 1 [Aurantimonas manganoxydans SI85-9A1]</div></td>
<td><a href="#90420383" title="Show alignment for ZP_01228291.1"> 630</a></td>
<td> 630</td>
<td>96%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/328542636?report=genbank&amp;log$=prottop&amp;blast_rank=66&amp;RID=CJ3JAY4J013" title="Show report for YP_004302745.1">YP_004302745.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large 
subunit-like protein [Polymorphum gilvum SL003B-26A1] &gt;gb|ADZ69445.1|
 Methanol dehydrogenase large subunit-like protein [Polymorphum gilvum 
SL003B-26A1]</div></td>
<td><a href="#328542636" title="Show alignment for YP_004302745.1"> 630</a></td>
<td> 630</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=328542636[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=66"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004302745.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/354956083?report=genbank&amp;log$=prottop&amp;blast_rank=67&amp;RID=CJ3JAY4J013" title="Show report for BAL08762.1">BAL08762.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large subunit [Bradyrhizobium japonicum USDA 6]</div></td>
<td><a href="#354956083" title="Show alignment for BAL08762.1"> 629</a></td>
<td> 629</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/262275102?report=genbank&amp;log$=prottop&amp;blast_rank=68&amp;RID=CJ3JAY4J013" title="Show report for ZP_06052913.1">ZP_06052913.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large subunit 
protein [Grimontia hollisae CIP 101886] &gt;gb|EEY72979.1| methanol 
dehydrogenase large subunit protein [Grimontia hollisae CIP 101886]</div></td>
<td><a href="#262275102" title="Show alignment for ZP_06052913.1"> 629</a></td>
<td> 629</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/16263921?report=genbank&amp;log$=prottop&amp;blast_rank=69&amp;RID=CJ3JAY4J013" title="Show report for NP_436713.1">NP_436713.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase, large subunit
 [Sinorhizobium meliloti 1021] &gt;ref|YP_004556573.1| PQQ-dependent 
dehydrogenase methanol/ethanol family protein [Sinorhizobium meliloti 
AK83] &gt;emb|CAC48573.1| putative methanol dehydrogenase protein, large
 subunit [Sinorhizobium meliloti 1021] &gt;gb|AEG08772.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Sinorhizobium meliloti BL225C] 
&gt;gb|AEG55693.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Sinorhizobium meliloti AK83] &gt;gb|AEH84262.1| putative methanol 
dehydrogenase protein, large subunit [Sinorhizobium meliloti SM11]</div></td>
<td><a href="#16263921" title="Show alignment for NP_436713.1"> 627</a></td>
<td> 627</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=16263921[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=69"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to NP_436713.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/260429814?report=genbank&amp;log$=prottop&amp;blast_rank=70&amp;RID=CJ3JAY4J013" title="Show report for ZP_05783790.1">ZP_05783790.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase subunit 1 
[Citreicella sp. SE45] &gt;gb|EEX12551.1| methanol dehydrogenase subunit
 1 [Citreicella sp. SE45]</div></td>
<td><a href="#260429814" title="Show alignment for ZP_05783790.1"> 627</a></td>
<td> 627</td>
<td>97%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/338850202?report=genbank&amp;log$=prottop&amp;blast_rank=71&amp;RID=CJ3JAY4J013" title="Show report for AEJ28413.1">AEJ28413.1</a></td>
<td class="lim l"><div class="lim">Methanol dehydrogenase large subunit protein [Paracoccus denitrificans SD1]</div></td>
<td><a href="#338850202" title="Show alignment for AEJ28413.1"> 627</a></td>
<td> 627</td>
<td>97%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/150376090?report=genbank&amp;log$=prottop&amp;blast_rank=72&amp;RID=CJ3JAY4J013" title="Show report for YP_001312686.1">YP_001312686.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Sinorhizobium medicae WSM419] &gt;gb|ABR62753.1| Pyrrolo-quinoline 
quinone [Sinorhizobium medicae WSM419]</div></td>
<td><a href="#150376090" title="Show alignment for YP_001312686.1"> 627</a></td>
<td> 627</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=150376090[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=72"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001312686.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/217977751?report=genbank&amp;log$=prottop&amp;blast_rank=73&amp;RID=CJ3JAY4J013" title="Show report for YP_002361898.1">YP_002361898.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Methylocella silvestris BL2] &gt;gb|ACK50536.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylocella silvestris BL2]</div></td>
<td><a href="#217977751" title="Show alignment for YP_002361898.1"> 626</a></td>
<td> 626</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=217977751[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=73"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002361898.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/290349616?report=genbank&amp;log$=prottop&amp;blast_rank=74&amp;RID=CJ3JAY4J013" title="Show report for BAI77916.1">BAI77916.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase alpha subunit [Bradyrhizobium sp. MAFF 211645]</div></td>
<td><a href="#290349616" title="Show alignment for BAI77916.1"> 625</a></td>
<td> 625</td>
<td>97%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/170743819?report=genbank&amp;log$=prottop&amp;blast_rank=75&amp;RID=CJ3JAY4J013" title="Show report for YP_001772474.1">YP_001772474.1</a></td>
<td class="lim l"><div class="lim">methanol/ethanol family PQQ-dependent
 dehydrogenase [Methylobacterium sp. 4-46] &gt;gb|ACA20040.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
sp. 4-46]</div></td>
<td><a href="#170743819" title="Show alignment for YP_001772474.1"> 624</a></td>
<td> 624</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=170743819[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=75"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001772474.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/307945181?report=genbank&amp;log$=prottop&amp;blast_rank=76&amp;RID=CJ3JAY4J013" title="Show report for ZP_07660517.1">ZP_07660517.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase subunit 1 
[Roseibium sp. TrichSKD4] &gt;gb|EFO30279.1| methanol dehydrogenase 
subunit 1 [Roseibium sp. TrichSKD4]</div></td>
<td><a href="#307945181" title="Show alignment for ZP_07660517.1"> 624</a></td>
<td> 624</td>
<td>97%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/91774700?report=genbank&amp;log$=prottop&amp;blast_rank=77&amp;RID=CJ3JAY4J013" title="Show report for YP_544456.1">YP_544456.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Methylobacillus flagellatus KT] &gt;gb|ABE48615.1| Pyrrolo-quinoline 
quinone [Methylobacillus flagellatus KT]</div></td>
<td><a href="#91774700" title="Show alignment for YP_544456.1"> 625</a></td>
<td> 625</td>
<td>100%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91774700[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=77"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_544456.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/220925805?report=genbank&amp;log$=prottop&amp;blast_rank=78&amp;RID=CJ3JAY4J013" title="Show report for YP_002501107.1">YP_002501107.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Methylobacterium nodulans ORS 2060] &gt;gb|ACL60804.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylobacterium nodulans ORS 
2060]</div></td>
<td><a href="#220925805" title="Show alignment for YP_002501107.1"> 624</a></td>
<td> 624</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=220925805[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=78"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002501107.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/146342329?report=genbank&amp;log$=prottop&amp;blast_rank=79&amp;RID=CJ3JAY4J013" title="Show report for YP_001207377.1">YP_001207377.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large 
subunit-like protein [Bradyrhizobium sp. ORS 278] &gt;emb|CAL79160.1| 
Methanol dehydrogenase large subunit homolog [Bradyrhizobium sp. ORS 
278]</div></td>
<td><a href="#146342329" title="Show alignment for YP_001207377.1"> 624</a></td>
<td> 624</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=146342329[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=79"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001207377.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/148257228?report=genbank&amp;log$=prottop&amp;blast_rank=80&amp;RID=CJ3JAY4J013" title="Show report for YP_001241813.1">YP_001241813.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large subunit 
[Bradyrhizobium sp. BTAi1] &gt;gb|ABQ37907.1| Methanol dehydrogenase 
large subunit [Bradyrhizobium sp. BTAi1]</div></td>
<td><a href="#148257228" title="Show alignment for YP_001241813.1"> 623</a></td>
<td> 623</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=148257228[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=80"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001241813.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/170746942?report=genbank&amp;log$=prottop&amp;blast_rank=81&amp;RID=CJ3JAY4J013" title="Show report for YP_001753202.1">YP_001753202.1</a></td>
<td class="lim l"><div class="lim">methanol/ethanol family PQQ-dependent
 dehydrogenase [Methylobacterium radiotolerans JCM 2831] 
&gt;gb|ACB22519.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylobacterium radiotolerans JCM 2831]</div></td>
<td><a href="#170746942" title="Show alignment for YP_001753202.1"> 622</a></td>
<td> 622</td>
<td>93%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=170746942[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=81"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001753202.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/114763281?report=genbank&amp;log$=prottop&amp;blast_rank=82&amp;RID=CJ3JAY4J013" title="Show report for ZP_01442705.1">ZP_01442705.1</a></td>
<td class="lim l"><div class="lim">putative methanol dehydrogenase 
protein, large subunit [Pelagibaca bermudensis HTCC2601] 
&gt;gb|EAU47089.1| putative methanol dehydrogenase protein, large 
subunit [Roseovarius sp. HTCC2601]</div></td>
<td><a href="#114763281" title="Show alignment for ZP_01442705.1"> 622</a></td>
<td> 622</td>
<td>95%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/260575632?report=genbank&amp;log$=prottop&amp;blast_rank=83&amp;RID=CJ3JAY4J013" title="Show report for ZP_05843629.1">ZP_05843629.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Rhodobacter sp. SW2] &gt;gb|EEW25329.1| 
PQQ-dependent dehydrogenase, methanol/ethanol family [Rhodobacter sp. 
SW2]</div></td>
<td><a href="#260575632" title="Show alignment for ZP_05843629.1"> 622</a></td>
<td> 622</td>
<td>96%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/11139249?report=genbank&amp;log$=prottop&amp;blast_rank=84&amp;RID=CJ3JAY4J013" title="Show report for AAG31643.1">AAG31643.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large subunit-like protein [Sinorhizobium meliloti]</div></td>
<td><a href="#11139249" title="Show alignment for AAG31643.1"> 620</a></td>
<td> 620</td>
<td>97%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/163851236?report=genbank&amp;log$=prottop&amp;blast_rank=85&amp;RID=CJ3JAY4J013" title="Show report for YP_001639279.1">YP_001639279.1</a></td>
<td class="lim l"><div class="lim">methanol/ethanol family PQQ-dependent
 dehydrogenase [Methylobacterium extorquens PA1] &gt;ref|YP_002420920.1|
 methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
chloromethanicum CM4] &gt;ref|YP_002962861.1| XoxF, PQQ-linked 
dehydrogenase of unknown function [Methylobacterium extorquens AM1] 
&gt;ref|YP_003068030.1| PQQ-linked dehydrogenase [Methylobacterium 
extorquens DM4] &gt;gb|ABY30208.1| PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylobacterium extorquens PA1] 
&gt;gb|ACK82992.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylobacterium chloromethanicum CM4] &gt;gb|ACS39584.1| XoxF, 
PQQ-linked dehydrogenase of unknown function [Methylobacterium 
extorquens AM1] &gt;emb|CAX24146.1| putative PQQ-linked dehydrogenase 
precursor [Methylobacterium extorquens DM4]</div></td>
<td><a href="#163851236" title="Show alignment for YP_001639279.1"> 619</a></td>
<td> 619</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=163851236[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001639279.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/126732891?report=genbank&amp;log$=prottop&amp;blast_rank=86&amp;RID=CJ3JAY4J013" title="Show report for ZP_01748681.1">ZP_01748681.1</a></td>
<td class="lim l"><div class="lim">putative methanol dehydrogenase 
protein, large subunit [Sagittula stellata E-37] &gt;gb|EBA05672.1| 
putative methanol dehydrogenase protein, large subunit [Sagittula 
stellata E-37]</div></td>
<td><a href="#126732891" title="Show alignment for ZP_01748681.1"> 618</a></td>
<td> 618</td>
<td>95%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/292493826?report=genbank&amp;log$=prottop&amp;blast_rank=87&amp;RID=CJ3JAY4J013" title="Show report for YP_003529265.1">YP_003529265.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Nitrosococcus halophilus Nc4] 
&gt;gb|ADE16878.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Nitrosococcus halophilus Nc4]</div></td>
<td><a href="#292493826" title="Show alignment for YP_003529265.1"> 619</a></td>
<td> 619</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=292493826[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=87"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003529265.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/188581014?report=genbank&amp;log$=prottop&amp;blast_rank=88&amp;RID=CJ3JAY4J013" title="Show report for YP_001924459.1">YP_001924459.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Methylobacterium populi BJ001] &gt;gb|ACB79924.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylobacterium populi BJ001]</div></td>
<td><a href="#188581014" title="Show alignment for YP_001924459.1"> 618</a></td>
<td> 618</td>
<td>93%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=188581014[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=88"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001924459.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/114327315?report=genbank&amp;log$=prottop&amp;blast_rank=89&amp;RID=CJ3JAY4J013" title="Show report for YP_744472.1">YP_744472.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase subunit 1 
[Granulibacter bethesdensis CGDNIH1] &gt;gb|ABI61549.1| methanol 
dehydrogenase subunit 1 [Granulibacter bethesdensis CGDNIH1]</div></td>
<td><a href="#114327315" title="Show alignment for YP_744472.1"> 618</a></td>
<td> 618</td>
<td>100%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114327315[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=89"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_744472.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/121611870?report=genbank&amp;log$=prottop&amp;blast_rank=90&amp;RID=CJ3JAY4J013" title="Show report for YP_999677.1">YP_999677.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Verminephrobacter eiseniae EF01-2] &gt;gb|ABM60659.1| Pyrrolo-quinoline
 quinone [Verminephrobacter eiseniae EF01-2]</div></td>
<td><a href="#121611870" title="Show alignment for YP_999677.1"> 618</a></td>
<td> 618</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=121611870[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=90"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_999677.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/114706743?report=genbank&amp;log$=prottop&amp;blast_rank=91&amp;RID=CJ3JAY4J013" title="Show report for ZP_01439643.1">ZP_01439643.1</a></td>
<td class="lim l"><div class="lim">putative pqq dehydrogenase protein 
[Fulvimarina pelagi HTCC2506] &gt;gb|EAU40815.1| putative pqq 
dehydrogenase protein [Fulvimarina pelagi HTCC2506]</div></td>
<td><a href="#114706743" title="Show alignment for ZP_01439643.1"> 619</a></td>
<td> 619</td>
<td>98%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/119382777?report=genbank&amp;log$=prottop&amp;blast_rank=92&amp;RID=CJ3JAY4J013" title="Show report for YP_913833.1">YP_913833.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone [Paracoccus
 denitrificans PD1222] &gt;gb|ABL68137.1| Pyrrolo-quinoline quinone 
[Paracoccus denitrificans PD1222]</div></td>
<td><a href="#119382777" title="Show alignment for YP_913833.1"> 617</a></td>
<td> 617</td>
<td>97%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=119382777[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=92"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_913833.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/2160682?report=genbank&amp;log$=prottop&amp;blast_rank=93&amp;RID=CJ3JAY4J013" title="Show report for AAB58890.1">AAB58890.1</a></td>
<td class="lim l"><div class="lim">methanol dehydrogenase large subunit homolog [Methylobacterium extorquens AM1]</div></td>
<td><a href="#2160682" title="Show alignment for AAB58890.1"> 617</a></td>
<td> 617</td>
<td>95%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/298291035?report=genbank&amp;log$=prottop&amp;blast_rank=94&amp;RID=CJ3JAY4J013" title="Show report for YP_003692974.1">YP_003692974.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase [Starkeya
 novella DSM 506] &gt;gb|ADH88355.1| PQQ-dependent dehydrogenase, 
methanol/ethanol family [Starkeya novella DSM 506]</div></td>
<td><a href="#298291035" title="Show alignment for YP_003692974.1"> 616</a></td>
<td> 616</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=298291035[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=94"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003692974.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/115522876?report=genbank&amp;log$=prottop&amp;blast_rank=95&amp;RID=CJ3JAY4J013" title="Show report for YP_779787.1">YP_779787.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Rhodopseudomonas palustris BisA53] &gt;gb|ABJ04807.1| Pyrrolo-quinoline
 quinone [Rhodopseudomonas palustris BisA53]</div></td>
<td><a href="#115522876" title="Show alignment for YP_779787.1"> 614</a></td>
<td> 614</td>
<td>95%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=115522876[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=95"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_779787.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/253997137?report=genbank&amp;log$=prottop&amp;blast_rank=96&amp;RID=CJ3JAY4J013" title="Show report for YP_003049201.1">YP_003049201.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase 
[Methylotenera mobilis JLW8] &gt;gb|ACT48674.1| PQQ-dependent 
dehydrogenase, methanol/ethanol family [Methylotenera mobilis JLW8]</div></td>
<td><a href="#253997137" title="Show alignment for YP_003049201.1"> 614</a></td>
<td> 614</td>
<td>98%</td>
<td>0.0</td><td><a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=253997137[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genetop&amp;blast_rank=96"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003049201.1" border="0" height="16" width="16"></a></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/1722883?report=genbank&amp;log$=prottop&amp;blast_rank=97&amp;RID=CJ3JAY4J013" title="Show report for P29968.2">P29968.2</a></td>
<td class="lim l"><div class="lim">RecName: Full=Putative dehydrogenase 
xoxF; Flags: Precursor &gt;gb|AAC44555.1| PQQ-dependent dehydrogenase 
large subunit [Paracoccus denitrificans]</div></td>
<td><a href="#1722883" title="Show alignment for P29968.2"> 612</a></td>
<td> 612</td>
<td>97%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/323135669?report=genbank&amp;log$=prottop&amp;blast_rank=98&amp;RID=CJ3JAY4J013" title="Show report for ZP_08070752.1">ZP_08070752.1</a></td>
<td class="lim l"><div class="lim">PQQ-dependent dehydrogenase, 
methanol/ethanol family [Methylocystis sp. ATCC 49242] 
&gt;gb|EFY01279.1| PQQ-dependent dehydrogenase, methanol/ethanol family 
[Methylocystis sp. ATCC 49242]</div></td>
<td><a href="#323135669" title="Show alignment for ZP_08070752.1"> 612</a></td>
<td> 612</td>
<td>97%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/335424094?report=genbank&amp;log$=prottop&amp;blast_rank=99&amp;RID=CJ3JAY4J013" title="Show report for ZP_08553110.1">ZP_08553110.1</a></td>
<td class="lim l"><div class="lim">Pyrrolo-quinoline quinone 
[Salinisphaera shabanensis E1L3A] &gt;ref|ZP_08553443.1| 
Pyrrolo-quinoline quinone [Salinisphaera shabanensis E1L3A] 
&gt;gb|EGM27411.1| Pyrrolo-quinoline quinone [Salinisphaera shabanensis 
E1L3A] &gt;gb|EGM28652.1| Pyrrolo-quinoline quinone [Salinisphaera 
shabanensis E1L3A]</div></td>
<td><a href="#335424094" title="Show alignment for ZP_08553110.1"> 612</a></td>
<td> 612</td>
<td>96%</td>
<td>0.0</td><td></td> 
</tr><tr>
<td class="l"><a href="http://www.ncbi.nlm.nih.gov/protein/335044475?report=genbank&amp;log$=prottop&amp;blast_rank=100&amp;RID=CJ3JAY4J013" title="Show report for ZP_08537500.1">ZP_08537500.1</a></td>
<td class="lim l"><div class="lim">glucose dehydrogenase [Methylophaga 
aminisulfidivorans MP] &gt;gb|EGL53605.1| glucose dehydrogenase 
[Methylophaga aminisulfidivorans MP]</div></td>
<td><a href="#335044475" title="Show alignment for ZP_08537500.1"> 610</a></td>
<td> 610</td>
<td>96%</td>
<td>0.0</td><td></td> 
</tr>
</tbody>
</table>
<!--</div>-->
<!--</pre>  -->
</div><!--/#descriptions-->
</div><!-- descrInfo -->
</div><!--ARIA-->
</div>
<!-- this is the end tag for the <form in blastcgi templates -->

<!--<h2 class="">Alignments</h2>-->
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<h2 class="resArr">
<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showAlign" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="alignInfo" title="Show/hide Alignments">
<span class="ui-ncbitoggler-master-text">Alignments</span>
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<span name="seqlinks" class="seqlinks shownInl">
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<a name="getSeqs" class="ln" href="#">Get selected sequences</a>
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<a href="#" name="mltiAln" title="Multple Alignment of query and target sequences with expect value better than 0.001" class="lnt hidden shown">Multiple alignment</a>       

</span>
<form class="getseq" method="post" seqsform="getSeqAlignment1" action="http://www.ncbi.nlm.nih.gov/sites/entrez" id="submitterTop">
<input name="db" value="Protein" type="hidden">
<input id="selSeqs" name="term" value="" type="hidden">
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</form>
<form class="getseq" method="post" seqsform="getSeqAlignment1" action="http://www.ncbi.nlm.nih.gov/blast/treeview/treeView.cgi?request=page&amp;blastRID=CJ3JAY4J013&amp;queryID=lcl|6563&amp;distmode=on&amp;entrezLim=&amp;ex=&amp;exl=&amp;exh=&amp;ns=100" name="treesubmitterTop" id="treesubmitterTop" target="trv1CJ3JAY4J013">
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<form class="getseq" method="post" seqsform="getSeqAlignment1" action="http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi?CMD=submit&amp;blastRID=CJ3JAY4J013&amp;queryID=lcl|6563&amp;numSeqs=100" name="multisubmitterTop" id="multisubmitterTop" target="mlt1CJ3JAY4J013">
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<div id="alignments" class="blRes">
<pre><script src="blastp%20of%20m.caps_files/blastResult.js"></script><form name="getSeqAlignment1">
&gt;<input name="getSeqGi" value="53804883" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_113281" href="http://www.ncbi.nlm.nih.gov/protein/53804883?report=genbank&amp;log$=protalign&amp;blast_rank=1&amp;RID=CJ3JAY4J013">ref|YP_113281.1|</a><a name="53804883"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=53804883[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=1"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_113281.1" border="0" height="16" width="16"></a> methanol dehydrogenase protein, large subunit [Methylococcus 
capsulatus str. Bath]
 <a title="Show report for AAU92935" href="http://www.ncbi.nlm.nih.gov/protein/53758644?report=genbank&amp;log$=protalign&amp;blast_rank=1&amp;RID=CJ3JAY4J013">gb|AAU92935.1|</a><a name="53758644"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=53758644[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=1"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to AAU92935.1" border="0" height="16" width="16"></a> methanol dehydrogenase protein, large subunit [Methylococcus 
capsulatus str. Bath]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=3102522&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=1">GENE ID: 3102522 mxaF</a> | methanol dehydrogenase protein, large subunit
[Methylococcus capsulatus str. Bath] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score = 1247 bits (3227),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 601/601 (100%), Positives = 601/601 (100%), Gaps = 0/601 (0%)

Query  1    MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI  60
            MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI
Sbjct  1    MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI  60

Query  61   NSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKP  120
            NSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKP
Sbjct  61   NSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKP  120

Query  121  KQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDI  180
            KQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDI
Sbjct  121  KQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDI  180

Query  181  AMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKD  240
            AMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKD
Sbjct  181  AMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKD  240

Query  241  FNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPG  300
            FNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPG
Sbjct  241  FNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPG  300

Query  301  DNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNG  360
            DNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNG
Sbjct  301  DNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNG  360

Query  361  LVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYH  420
            LVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYH
Sbjct  361  LVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYH  420

Query  421  NQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAMN  480
            NQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAMN
Sbjct  421  NQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAMN  480

Query  481  AVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGH  540
            AVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGH
Sbjct  481  AVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGH  540

Query  541  PITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFS  600
            PITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFS
Sbjct  541  PITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFS  600

Query  601  L  601
            L
Sbjct  601  L  601


&gt;<input name="getSeqGi" value="333985955" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_004515165" href="http://www.ncbi.nlm.nih.gov/protein/333985955?report=genbank&amp;log$=protalign&amp;blast_rank=2&amp;RID=CJ3JAY4J013">ref|YP_004515165.1|</a><a name="333985955"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=333985955[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=2"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004515165.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Methylomonas methanica MC09]
 <a title="Show report for AEG02666" href="http://www.ncbi.nlm.nih.gov/protein/333809996?report=genbank&amp;log$=protalign&amp;blast_rank=2&amp;RID=CJ3JAY4J013">gb|AEG02666.1|</a><a name="333809996"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=333809996[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=2"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to AEG02666.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylomonas 
methanica MC09]
Length=602

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=10674343&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=2">GENE ID: 10674343 Metme_4317</a> | PQQ-dependent dehydrogenase
[Methylomonas methanica MC09]

 Score = 1036 bits (2679),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/602 (82%), Positives = 537/602 (89%), Gaps = 1/602 (0%)

Query  1    MQICKLAS-GCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTE  59
            MQ   L + G   +++A   +  AQ   AN EL++LSK + NWVMQTKDY +THFS + +
Sbjct  1    MQQLDLRTVGKTAALVAGGILSVAQPASANKELEQLSKQNTNWVMQTKDYGSTHFSEMID  60

Query  60   INSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYK  119
            IN++NVKNLKVAW+ STG L+GHEG PLVVDGIMY+HTP+PNNV+A+ L++  K+LWQ+K
Sbjct  61   INANNVKNLKVAWSFSTGVLNGHEGGPLVVDGIMYVHTPYPNNVFAISLDEPDKILWQFK  120

Query  120  PKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSD  179
            PKQNPAARAVACCDVVNRGLAY PAG+  PA IFLNQLDGH+VALNAKTGE  WKMENSD
Sbjct  121  PKQNPAARAVACCDVVNRGLAYAPAGKDYPATIFLNQLDGHVVALNAKTGELRWKMENSD  180

Query  180  IAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDK  239
            IAMGSTLT APFV KDKV+VGS+GAELGVRGY TAYN+KDGKQEWR YATGPDED+ L K
Sbjct  181  IAMGSTLTVAPFVAKDKVIVGSSGAELGVRGYATAYNVKDGKQEWRVYATGPDEDIKLAK  240

Query  240  DFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRP  299
            DFN  NPHYGQFGLGL TWEGDAWKIGGGTNWGWYAYD  L+M+YYGSGNPAPWNETMRP
Sbjct  241  DFNSANPHYGQFGLGLKTWEGDAWKIGGGTNWGWYAYDSDLEMLYYGSGNPAPWNETMRP  300

Query  300  GDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRN  359
            GDNKWTMTIWGRD D+G AKFGYQKTPHDEWDYAGVNYMGLSEQ V+GK T LLTHPDRN
Sbjct  301  GDNKWTMTIWGRDIDSGEAKFGYQKTPHDEWDYAGVNYMGLSEQMVNGKKTKLLTHPDRN  360

Query  360  GLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGY  419
            G+VYTLNRE G LVNAFKIDDTVNWVKKVDLKTGLP+RDPEYST MDH A GICPSAMGY
Sbjct  361  GIVYTLNRENGDLVNAFKIDDTVNWVKKVDLKTGLPVRDPEYSTHMDHQATGICPSAMGY  420

Query  420  HNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAM  479
            HNQGIESYDP+K+LFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG LGQVKAM
Sbjct  421  HNQGIESYDPNKQLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGTLGQVKAM  480

Query  480  NAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIG  539
            NAVTGKMEWEV EKFAVWGGT+ATAGDLVFYGTLDG+IKAR ++TGE  W+F+LPSGVIG
Sbjct  481  NAVTGKMEWEVQEKFAVWGGTMATAGDLVFYGTLDGYIKARHSKTGEELWKFKLPSGVIG  540

Query  540  HPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVF  599
            HPITY+HN KQY+AIY GVGGWPGVGLVFDL DPTAGLGAVGAF+ELAHYTQMGG V VF
Sbjct  541  HPITYKHNNKQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKELAHYTQMGGGVMVF  600

Query  600  SL  601
            SL
Sbjct  601  SL  602


&gt;<input name="getSeqGi" value="334112188" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08486452" href="http://www.ncbi.nlm.nih.gov/protein/334112188?report=genbank&amp;log$=protalign&amp;blast_rank=3&amp;RID=CJ3JAY4J013">ref|ZP_08486452.1|</a><a name="334112188"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylomicrobium 
album BG8]
 <a title="Show report for ABE77336" href="http://www.ncbi.nlm.nih.gov/protein/92430144?report=genbank&amp;log$=protalign&amp;blast_rank=3&amp;RID=CJ3JAY4J013">gb|ABE77336.1|</a><a name="92430144"></a>  methanol dehydrogenase large subunit [Methylomicrobium sp. HG-1]
 <a title="Show report for EGL02539" href="http://www.ncbi.nlm.nih.gov/protein/333597707?report=genbank&amp;log$=protalign&amp;blast_rank=3&amp;RID=CJ3JAY4J013">gb|EGL02539.1|</a><a name="333597707"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylomicrobium 
album BG8]
Length=603

 Score = 1033 bits (2672),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/606 (81%), Positives = 537/606 (89%), Gaps = 10/606 (2%)

Query  1    MQICKLAS-----GCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFS  55
            M+I K+        CGG+ LA     AA    AN ELDRLSK+D NWVMQTKDY ATHFS
Sbjct  1    MRISKITRTAVSLACGGAFLA-----AALPAEANKELDRLSKEDTNWVMQTKDYGATHFS  55

Query  56   RLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKML  115
            ++T+IN+ NV +LK  W+ STG L+GHEG PLVVDGIMY+HTP+PNNVYA+DLN+  K+L
Sbjct  56   KMTQINTRNVHHLKPVWSFSTGVLNGHEGGPLVVDGIMYVHTPYPNNVYAIDLNNPDKIL  115

Query  116  WQYKPKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKM  175
            WQYKPKQNPAARAVACCDVVNRG+AY PAG   PA IFLNQLDG++VAL+AKTGE +WKM
Sbjct  116  WQYKPKQNPAARAVACCDVVNRGVAYAPAGPDYPATIFLNQLDGNVVALHAKTGELLWKM  175

Query  176  ENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDL  235
            ENSDIAMGSTLT APFV KDKV+VGS+GAELGVRGY TAY IKDGKQ WR YATGPDED+
Sbjct  176  ENSDIAMGSTLTIAPFVAKDKVIVGSSGAELGVRGYATAYYIKDGKQAWRVYATGPDEDI  235

Query  236  LLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNE  295
             L KDFN  NPHYGQFGLGL TWEGDAWKIGGGTNWGWYA+DP LDM+YYGSGNPAPWNE
Sbjct  236  KLAKDFNSHNPHYGQFGLGLKTWEGDAWKIGGGTNWGWYAFDPDLDMLYYGSGNPAPWNE  295

Query  296  TMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTH  355
            TMRPGDNKWTMTIWGRD DTG AKFGYQKTPHDEWDYAGVNYMGLSEQ VDGK+T LLTH
Sbjct  296  TMRPGDNKWTMTIWGRDIDTGEAKFGYQKTPHDEWDYAGVNYMGLSEQMVDGKMTKLLTH  355

Query  356  PDRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPS  415
            PDRNGLVYTLNRE G LVNAFKIDDTVNWVKKVDLKTGLP+RDPEYST MDH AKGICPS
Sbjct  356  PDRNGLVYTLNRENGDLVNAFKIDDTVNWVKKVDLKTGLPVRDPEYSTHMDHQAKGICPS  415

Query  416  AMGYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQ  475
            AMGYHNQGIESYDP+K+LFFMG+NHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG LGQ
Sbjct  416  AMGYHNQGIESYDPEKQLFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGTLGQ  475

Query  476  VKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPS  535
            VKAMN+VTGK +WEV EKFAVWGGT+ATAGDLVFYGTLDG+IKA D+R G+  W+F+LPS
Sbjct  476  VKAMNSVTGKFDWEVQEKFAVWGGTMATAGDLVFYGTLDGYIKALDSRNGKELWKFKLPS  535

Query  536  GVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGS  595
            GVIGHPITY H+GKQY+AIY GVGGWPGVGLVFDL+DPTAGLGAVGAF+ELAHYTQ GG 
Sbjct  536  GVIGHPITYGHDGKQYVAIYYGVGGWPGVGLVFDLQDPTAGLGAVGAFKELAHYTQQGGG  595

Query  596  VFVFSL  601
            V VF+L
Sbjct  596  VMVFAL  601


&gt;<input name="getSeqGi" value="357406770" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_004918694" href="http://www.ncbi.nlm.nih.gov/protein/357406770?report=genbank&amp;log$=protalign&amp;blast_rank=4&amp;RID=CJ3JAY4J013">ref|YP_004918694.1|</a><a name="357406770"></a>  Methanol dehydrogenase, large subunit [Methylomicrobium alcaliphilum]
 <a title="Show report for CCE25111" href="http://www.ncbi.nlm.nih.gov/protein/351719435?report=genbank&amp;log$=protalign&amp;blast_rank=4&amp;RID=CJ3JAY4J013">emb|CCE25111.1|</a><a name="351719435"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=351719435[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=4"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to CCE25111.1" border="0" height="16" width="16"></a> Methanol dehydrogenase, large subunit [Methylomicrobium alcaliphilum]
Length=602

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=11359871&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=4">GENE ID: 11359871 mxaF</a> | Methanol dehydrogenase, large subunit
[Methylomicrobium sp. 20Z]

 Score = 1027 bits (2655),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/602 (81%), Positives = 536/602 (89%), Gaps = 1/602 (0%)

Query  1    MQICKLASGCGGSMLAMAAVLAA-QSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTE  59
            MQ  K     G + L  + +LAA Q   AN  LD+LSK + NWVMQTKDYS+TH+S L +
Sbjct  1    MQHHKKRELWGAAALVSSVLLAASQPAQANQALDKLSKQNTNWVMQTKDYSSTHYSELYD  60

Query  60   INSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYK  119
            IN  NV+NLK AW+ STG L+GHEG PLVVDGIMY+H+P+PNNV+A+DLN+  K+LWQ+K
Sbjct  61   INITNVQNLKPAWSFSTGVLNGHEGGPLVVDGIMYVHSPYPNNVFAIDLNNPDKILWQFK  120

Query  120  PKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSD  179
            PKQNPAARAVACCDVVNRGLAY P G+  PA IFLNQLDGH+VALNAKTGE +WKMENSD
Sbjct  121  PKQNPAARAVACCDVVNRGLAYAPQGKDYPATIFLNQLDGHVVALNAKTGELLWKMENSD  180

Query  180  IAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDK  239
            IAMGSTLT APFV +DKV+VG++GAELGVRGY TAYNIKDGKQ WR YATGPDED+ L K
Sbjct  181  IAMGSTLTVAPFVAEDKVIVGTSGAELGVRGYATAYNIKDGKQAWRVYATGPDEDIKLSK  240

Query  240  DFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRP  299
            DFNK NPHYGQFGLGL TWEGDAWKIGGGTNWGWYAYDP L M+YYGSGNPAPWNETMRP
Sbjct  241  DFNKANPHYGQFGLGLKTWEGDAWKIGGGTNWGWYAYDPDLRMLYYGSGNPAPWNETMRP  300

Query  300  GDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRN  359
            GDNKWTMTIWGRD +TG AKFGYQKTPHDEWDYAGVNYMGLSEQ+V+GK+T LLTHPDRN
Sbjct  301  GDNKWTMTIWGRDIETGEAKFGYQKTPHDEWDYAGVNYMGLSEQKVNGKMTKLLTHPDRN  360

Query  360  GLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGY  419
            G+VYTLNRE G LVNAFKID+TVNWVK VDLKTGLP+RDPEYSTRMDH AKGICPSAMGY
Sbjct  361  GIVYTLNRENGDLVNAFKIDNTVNWVKHVDLKTGLPVRDPEYSTRMDHEAKGICPSAMGY  420

Query  420  HNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAM  479
            HNQGIESYDP+K+LFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG LGQVKAM
Sbjct  421  HNQGIESYDPNKQLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGTLGQVKAM  480

Query  480  NAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIG  539
            N VTG+ EWEV EKFAVWGGT ATAGDLVFYGTLDG+IKA +++TGE  W+F+LPSGVIG
Sbjct  481  NGVTGEFEWEVQEKFAVWGGTTATAGDLVFYGTLDGYIKALNSKTGEELWKFKLPSGVIG  540

Query  540  HPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVF  599
            HPITY+H GKQY+AIY GVGGWPGVGLVFDLKDP+AGLGAVGAF+ELAH+TQMGG V VF
Sbjct  541  HPITYKHEGKQYVAIYYGVGGWPGVGLVFDLKDPSAGLGAVGAFKELAHHTQMGGGVMVF  600

Query  600  SL  601
            SL
Sbjct  601  SL  602


&gt;<input name="getSeqGi" value="344943988" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08783274" href="http://www.ncbi.nlm.nih.gov/protein/344943988?report=genbank&amp;log$=protalign&amp;blast_rank=5&amp;RID=CJ3JAY4J013">ref|ZP_08783274.1|</a><a name="344943988"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacter 
tundripaludum SV96]
 <a title="Show report for EGW19919" href="http://www.ncbi.nlm.nih.gov/protein/344259646?report=genbank&amp;log$=protalign&amp;blast_rank=5&amp;RID=CJ3JAY4J013">gb|EGW19919.1|</a><a name="344259646"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacter 
tundripaludum SV96]
Length=604

 Score = 1026 bits (2652),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/602 (80%), Positives = 532/602 (88%), Gaps = 1/602 (0%)

Query  1    MQICKLASGCGGSMLAMAAVL-AAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTE  59
            M+I K       S +   A+L  +  T AN  L RLSK+D NWVMQTKDYSA+HFS +T+
Sbjct  1    MRISKFTRAAVASAVCSGALLTVSMPTQANKALARLSKEDTNWVMQTKDYSASHFSDMTQ  60

Query  60   INSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYK  119
            IN+HNV++L+  W+ STG L+GHEG PLV+DGIMY+HTPFPNN++A+DL++  K+LW++K
Sbjct  61   INAHNVQHLQPVWSFSTGVLNGHEGGPLVIDGIMYVHTPFPNNIFAIDLDEPDKILWEHK  120

Query  120  PKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSD  179
            PKQNPAARAVACCDVVNRGLAY PAG+  PA IF NQLDGHIVALNAKTGE +WKMENSD
Sbjct  121  PKQNPAARAVACCDVVNRGLAYAPAGDDYPATIFQNQLDGHIVALNAKTGELLWKMENSD  180

Query  180  IAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDK  239
            IAMGSTLT APFV KDKV+VGS+GAELGVRGY TAYNIKDGKQ WR YATGPD D+ L K
Sbjct  181  IAMGSTLTVAPFVAKDKVIVGSSGAELGVRGYATAYNIKDGKQAWRVYATGPDADIKLAK  240

Query  240  DFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRP  299
            DFN  NPHYGQFGLGL TWEGDAWKIGGGTNWGWYA+DP LDM+YYGSGNPAPWNETMRP
Sbjct  241  DFNSANPHYGQFGLGLKTWEGDAWKIGGGTNWGWYAFDPDLDMLYYGSGNPAPWNETMRP  300

Query  300  GDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRN  359
            GDNKWTMTIWGRD +TG AKFGYQKTPHDEWDYAGVNYMGLSEQ VDGK+T LLTHPDRN
Sbjct  301  GDNKWTMTIWGRDINTGEAKFGYQKTPHDEWDYAGVNYMGLSEQLVDGKMTKLLTHPDRN  360

Query  360  GLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGY  419
            GLVYTLNRE G LVNAFKIDDTVNWVKKVDLKTGLP+RDPE+ST MDH AKGICPSAMGY
Sbjct  361  GLVYTLNRENGDLVNAFKIDDTVNWVKKVDLKTGLPVRDPEFSTHMDHEAKGICPSAMGY  420

Query  420  HNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAM  479
            HNQGIESYDP+KKLFFMG NHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG LGQVKAM
Sbjct  421  HNQGIESYDPNKKLFFMGTNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGTLGQVKAM  480

Query  480  NAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIG  539
            N+VTGK EWE+ EKFAVWGGT ATAGDLVFYGTLDG+IKA D+R G+  W+F++PSGVIG
Sbjct  481  NSVTGKFEWEIKEKFAVWGGTTATAGDLVFYGTLDGYIKALDSRNGKELWKFKVPSGVIG  540

Query  540  HPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVF  599
            HPIT+ H GKQY+AIY GVGGWPGVGLVFDL+DPTAGLGAVGAF+ELAHYTQ GG V VF
Sbjct  541  HPITFGHKGKQYVAIYYGVGGWPGVGLVFDLQDPTAGLGAVGAFKELAHYTQQGGGVMVF  600

Query  600  SL  601
            +L
Sbjct  601  AL  602


&gt;<input name="getSeqGi" value="258590933" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for CBE67228" href="http://www.ncbi.nlm.nih.gov/protein/258590933?report=genbank&amp;log$=protalign&amp;blast_rank=6&amp;RID=CJ3JAY4J013">emb|CBE67228.1|</a><a name="258590933"></a>  Methanol dehydrogenase large subunit (mxaF1) [NC10 bacterium 
'Dutch sediment']
Length=601

 Score =  931 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/592 (72%), Positives = 514/592 (87%), Gaps = 8/592 (1%)

Query  10   CGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
             GG +L +    +  S  AN EL RL+KD+RNWVMQTKDY+   FS+L +I++ NVKNL+
Sbjct  14   VGGMLLHLTMTSSVAS--ANEELIRLAKDERNWVMQTKDYTVQRFSKLDQIDTSNVKNLQ  71

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
             AW+ STG LHGHEG PLVV+GIMY+H+ +PNNVYA+DL    K++W+Y+PKQNPAARAV
Sbjct  72   PAWSFSTGVLHGHEGGPLVVNGIMYVHSAYPNNVYAIDLEHPEKIMWEYRPKQNPAARAV  131

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
            ACCD+VNRGLAY      G  K+ L+ LDG ++A++AKTG+ IW +E +D+++G T T A
Sbjct  132  ACCDLVNRGLAY------GDGKLILSTLDGQLIAMDAKTGKVIWNVETADVSVGQTQTQA  185

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
            PFVVKDKV++GSAGAELGVRGYVTA+N+KDGK+ WRA+ATGPD+D+LLDKDFNK NPHYG
Sbjct  186  PFVVKDKVIIGSAGAELGVRGYVTAFNLKDGKKVWRAFATGPDKDILLDKDFNKQNPHYG  245

Query  250  QFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIW  309
            +FGLGL TWEGDAWKIGGGTNWGWYAYDPKLD+IYYGSGNPAPWNETMRPGDNKWTMT+W
Sbjct  246  RFGLGLKTWEGDAWKIGGGTNWGWYAYDPKLDLIYYGSGNPAPWNETMRPGDNKWTMTMW  305

Query  310  GRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRET  369
            GR+ DTG AK+GYQKTPHDEWDYAG+NYM L++Q ++GK+TPL+THPDRNG++YTLNRET
Sbjct  306  GRNPDTGLAKYGYQKTPHDEWDYAGINYMMLTDQVINGKMTPLVTHPDRNGIIYTLNRET  365

Query  370  GALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDP  429
            G+LV A KID +VNW +KVDLKTG+ IRDPE+STRMDH A+GICPSAMGYHNQG++SYDP
Sbjct  366  GSLVAADKIDPSVNWTRKVDLKTGIAIRDPEFSTRMDHKARGICPSAMGYHNQGLDSYDP  425

Query  430  DKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAMNAVTGKMEWE  489
              ++FFMGVNHICMDWEPFMLPYRAGQFFVGATL+MYPGPKG LG+VKA +  T  M+WE
Sbjct  426  RSEIFFMGVNHICMDWEPFMLPYRAGQFFVGATLSMYPGPKGYLGEVKAYDVKTNSMKWE  485

Query  490  VPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGK  549
              EKF+VWGGT+ATAG+LVFYGTLDG+ KA D+ +GE  W+F+LPSGVIGHPITY+HNGK
Sbjct  486  KAEKFSVWGGTMATAGNLVFYGTLDGWFKALDSGSGEELWKFKLPSGVIGHPITYEHNGK  545

Query  550  QYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            QY+AI  GVGGWPGVGLVFDL DPTAGLG+VGAF+ELA YT+MGG + VF+L
Sbjct  546  QYVAILYGVGGWPGVGLVFDLNDPTAGLGSVGAFKELAKYTKMGGGLMVFAL  597


&gt;<input name="getSeqGi" value="323138709" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08073775" href="http://www.ncbi.nlm.nih.gov/protein/323138709?report=genbank&amp;log$=protalign&amp;blast_rank=7&amp;RID=CJ3JAY4J013">ref|ZP_08073775.1|</a><a name="323138709"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylocystis 
sp. ATCC 49242]
 <a title="Show report for EFX98599" href="http://www.ncbi.nlm.nih.gov/protein/322396064?report=genbank&amp;log$=protalign&amp;blast_rank=7&amp;RID=CJ3JAY4J013">gb|EFX98599.1|</a><a name="322396064"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylocystis 
sp. ATCC 49242]
Length=624

 Score =  909 bits (2350),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 425/596 (71%), Positives = 508/596 (85%), Gaps = 7/596 (1%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            S+L  A ++AA    A+  L+ L+K + NW MQ K+YS+ H+S LT+IN+ NVKNLKV+W
Sbjct  12   SVLIAAPLVAASVAQADDRLEALTKSENNWAMQGKNYSSNHYSTLTQINAENVKNLKVSW  71

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            + STG L GHEGAP+VVDG MY+HT FPNN +A++L+D  ++LWQ+KPKQN AARAVACC
Sbjct  72   SFSTGLLSGHEGAPIVVDGKMYVHTSFPNNTFALNLDDPTRILWQHKPKQNAAARAVACC  131

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            D+VNRGLAY P+    P+ +    LDG++VALNA+TG+E WK+ENSD  +GSTLT AP V
Sbjct  132  DIVNRGLAYWPSDGKTPSLVIKTLLDGNVVALNAETGQEYWKVENSDFKVGSTLTVAPHV  191

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
             KD VL+GS+GAELGVRGY+TAY+++ G+Q+WRAYATGPD D+L+  DFNK NPHYGQ G
Sbjct  192  YKDVVLIGSSGAELGVRGYMTAYDVRTGEQKWRAYATGPDSDVLIGDDFNKANPHYGQKG  251

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
            LG STWEGDAWKIGGGTNWGW+AYDP  +++YYGSGNPAPWNETMRPGDNKWTMTIWGRD
Sbjct  252  LGTSTWEGDAWKIGGGTNWGWFAYDPGTNLVYYGSGNPAPWNETMRPGDNKWTMTIWGRD  311

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGA  371
             +TG+AKFGYQKTPHDEWDYAG+N+M LSEQ + +GKL  LLTHPDRNG+VYTL+R  G 
Sbjct  312  LETGQAKFGYQKTPHDEWDYAGINFMMLSEQKDKEGKLRKLLTHPDRNGIVYTLDRTDGT  371

Query  372  LVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDK  431
            L++A KIDDTVN  KK+DLK+GLP+RDPEY TRMDH AK +CPSAMGYHNQG++SYDP+K
Sbjct  372  LISADKIDDTVNVFKKIDLKSGLPVRDPEYGTRMDHLAKDVCPSAMGYHNQGLDSYDPNK  431

Query  432  KLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGK  485
            +LFF+GVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA NA+TG+
Sbjct  432  ELFFLGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQKGEGLGQIKAYNAITGQ  491

Query  486  MEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQ  545
             +WE  E+FAVWGGT ATAG++VFYGTLDGFIKAR++ TGEL W+F+LPSGVIGHPI YQ
Sbjct  492  FKWEKMERFAVWGGTAATAGNVVFYGTLDGFIKARNSDTGELLWKFKLPSGVIGHPIVYQ  551

Query  546  HNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            H G +Y+AI  GVGGWPGVGLVFDL+DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  552  HKGVEYVAIMYGVGGWPGVGLVFDLQDPTAGLGAVGAFKQLANYTQMGGGVMVFSL  607


&gt;<input name="getSeqGi" value="170762582" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ACB32192" href="http://www.ncbi.nlm.nih.gov/protein/170762582?report=genbank&amp;log$=protalign&amp;blast_rank=8&amp;RID=CJ3JAY4J013">gb|ACB32192.1|</a><a name="170762582"></a>  MxaF [uncultured bacterium 16A2]
Length=651

 Score =  899 bits (2324),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/604 (71%), Positives = 501/604 (83%), Gaps = 7/604 (1%)

Query  5    KLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHN  64
            KL S      + +A  LA  +  A  +L  LS  + NW MQ K+YS+ H+S LT+IN+ N
Sbjct  31   KLVSSVSLVCICLAVPLATSAARAEDKLQALSNSEDNWAMQGKNYSSNHYSALTQINAEN  90

Query  65   VKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNP  124
            VKNLKV+W+ STG L GHEGAPLVVDG M+IHT FPNN +A++L+D  ++LWQ KPKQ+ 
Sbjct  91   VKNLKVSWSFSTGLLSGHEGAPLVVDGKMFIHTSFPNNTFALNLDDPTRILWQDKPKQSA  150

Query  125  AARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGS  184
            AARAVACCD+VNRGLAY P     P+ I    LDG++VALNA+TG   WK+ENSD  +GS
Sbjct  151  AARAVACCDIVNRGLAYWPGDGFTPSLIIKTLLDGNVVALNAETGATYWKIENSDFKVGS  210

Query  185  TLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKD  244
            TLT AP V K+ VL+GS+GAELGVRGY+TAY+++ G+Q+WRAYATGPD D+L+  DFNK 
Sbjct  211  TLTVAPHVYKNIVLIGSSGAELGVRGYMTAYDVRTGEQKWRAYATGPDSDVLIGDDFNKA  270

Query  245  NPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKW  304
            NPHYGQ GLG STWEGDAWKIGGGTNWGW+AYDP  +++YYGSGNPAPWNETMRPGDNKW
Sbjct  271  NPHYGQKGLGTSTWEGDAWKIGGGTNWGWFAYDPDTNLVYYGSGNPAPWNETMRPGDNKW  330

Query  305  TMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVY  363
            TMTIWGRD DTG AKFGYQKTPHDEWD+AG+N+M LSEQ + +GKL  LLTHPDRNG+VY
Sbjct  331  TMTIWGRDLDTGAAKFGYQKTPHDEWDFAGINFMMLSEQKDKEGKLRKLLTHPDRNGIVY  390

Query  364  TLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQG  423
            TL+R  G L++A KIDDTVN  KKVD+KTGLP+RDPEY TRMDH  K ICPSAMGYHNQG
Sbjct  391  TLDRTDGTLISADKIDDTVNVFKKVDIKTGLPVRDPEYGTRMDHLGKDICPSAMGYHNQG  450

Query  424  IESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVK  477
            ++SYDP K+LFF+GVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+K
Sbjct  451  LDSYDPTKELFFLGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQKGEGLGQIK  510

Query  478  AMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGV  537
            A NA+TG+ +WE  E+FAVWGGT ATAG++VFYGTLDGFIKAR++ TGEL W+F+LPSGV
Sbjct  511  AYNAITGQFKWEKMERFAVWGGTAATAGNVVFYGTLDGFIKARNSDTGELLWKFKLPSGV  570

Query  538  IGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVF  597
            IGHPI YQHNG +Y+AI  GVGGWPGVGLVFDL+DPTAGLGAVGAF++LA+YTQMGG V 
Sbjct  571  IGHPIVYQHNGIEYLAIMYGVGGWPGVGLVFDLQDPTAGLGAVGAFKQLANYTQMGGGVM  630

Query  598  VFSL  601
            VFSL
Sbjct  631  VFSL  634


&gt;<input name="getSeqGi" value="170750600" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001756860" href="http://www.ncbi.nlm.nih.gov/protein/170750600?report=genbank&amp;log$=protalign&amp;blast_rank=9&amp;RID=CJ3JAY4J013">ref|YP_001756860.1|</a><a name="170750600"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=170750600[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=9"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001756860.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
radiotolerans JCM 2831]
 <a title="Show report for ACB26177" href="http://www.ncbi.nlm.nih.gov/protein/170657122?report=genbank&amp;log$=protalign&amp;blast_rank=9&amp;RID=CJ3JAY4J013">gb|ACB26177.1|</a><a name="170657122"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=170657122[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=9"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACB26177.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
radiotolerans JCM 2831]
Length=627

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=6140269&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=9">GENE ID: 6140269 Mrad2831_4210</a> | methanol/ethanol family PQQ-dependent
dehydrogenase [Methylobacterium radiotolerans JCM 2831]
<span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  899 bits (2323),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/596 (73%), Positives = 495/596 (83%), Gaps = 7/596 (1%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            +++A+A V  A    AN +L   SK D NWVM  K+Y + ++S LT+IN  NVK LK AW
Sbjct  12   AIMALAPVAMAGVAQANDKLIEKSKSDENWVMPGKNYDSNNYSDLTQINKSNVKQLKPAW  71

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            T STG L+GHEGAPLVVDG+MYIHT FPNN +A+ L+D  K+LWQ KPKQNPAAR+VACC
Sbjct  72   TFSTGLLNGHEGAPLVVDGVMYIHTSFPNNTFALGLDDPGKILWQDKPKQNPAARSVACC  131

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            D+VNRGLAY P     PA I   QLDG++ ALNA+TGE +WK+ENSDI +GSTLT AP+V
Sbjct  132  DLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAQTGETVWKVENSDIKVGSTLTIAPYV  191

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
            VKDKV++GS+GAELGVRGY+TAY++K G Q WRAYATGPDEDLLL KDFN  N HYGQ G
Sbjct  192  VKDKVIIGSSGAELGVRGYLTAYDVKTGAQVWRAYATGPDEDLLLAKDFNIHNAHYGQKG  251

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
            LG +TWEGDAWKIGGGTNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRD
Sbjct  252  LGTATWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRD  311

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGA  371
            ADTG AKFGYQKTPHDEWDYAGVN M LS+Q + DGK+  LLTHPDRNG+VYTL+R  G 
Sbjct  312  ADTGEAKFGYQKTPHDEWDYAGVNVMMLSDQKDKDGKMRKLLTHPDRNGIVYTLDRTDGT  371

Query  372  LVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDK  431
            LV+A KIDDTVN  K VDLKTG P+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP +
Sbjct  372  LVSANKIDDTVNVFKSVDLKTGTPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  431

Query  432  KLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGK  485
            + F+MG+NHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+K+ NA+TGK
Sbjct  432  QAFYMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKSYNAITGK  491

Query  486  MEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQ  545
              WE  E+FAVWGGT ATAGDLV YGTLDGFIKARD+  G+L W+F+LPSG IG+PITY 
Sbjct  492  FNWEKMERFAVWGGTTATAGDLVLYGTLDGFIKARDSDNGDLLWKFKLPSGAIGYPITYT  551

Query  546  HNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            H G QY+AIY GVGGWPGVGLVFDL DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  552  HKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVMVFSL  607


&gt;<input name="getSeqGi" value="240140966" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_002965446" href="http://www.ncbi.nlm.nih.gov/protein/240140966?report=genbank&amp;log$=protalign&amp;blast_rank=10&amp;RID=CJ3JAY4J013">ref|YP_002965446.1|</a><a name="240140966"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=240140966[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=10"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002965446.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit 1 precursor (MDH large alpha subunit) 
(MEDH) [Methylobacterium extorquens AM1]
 <a title="Show report for YP_003070571" href="http://www.ncbi.nlm.nih.gov/protein/254563476?report=genbank&amp;log$=protalign&amp;blast_rank=10&amp;RID=CJ3JAY4J013">ref|YP_003070571.1|</a><a name="254563476"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=254563476[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=10"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003070571.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit 1 [Methylobacterium extorquens 
DM4]
 <a title="Show report for ACS42169" href="http://www.ncbi.nlm.nih.gov/protein/240010943?report=genbank&amp;log$=protalign&amp;blast_rank=10&amp;RID=CJ3JAY4J013">gb|ACS42169.1|</a><a name="240010943"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=240010943[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=10"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACS42169.1" border="0" height="16" width="16"></a> Methanol dehydrogenase subunit 1 precursor (MDH large alpha subunit) 
(MEDH) [Methylobacterium extorquens AM1]
 <a title="Show report for CAX26759" href="http://www.ncbi.nlm.nih.gov/protein/254270754?report=genbank&amp;log$=protalign&amp;blast_rank=10&amp;RID=CJ3JAY4J013">emb|CAX26759.1|</a><a name="254270754"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=254270754[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=10"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to CAX26759.1" border="0" height="16" width="16"></a> Methanol dehydrogenase subunit 1 precursor (MDH large alpha subunit) 
(MEDH) [Methylobacterium extorquens DM4]
Length=614

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=7994324&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=10">GENE ID: 7994324 mxaF</a> | methanol dehydrogenase subunit 1 precursor (MDH large
alpha subunit) (MEDH) [Methylobacterium extorquens AM1]
<span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  897 bits (2317),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/595 (73%), Positives = 496/595 (83%), Gaps = 7/595 (1%)

Query  14   MLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWT  73
            MLA+A    +   +AN +L  LSK D NWVM  K+Y + +FS L +IN  NVK L+ AWT
Sbjct  1    MLALAPAALSSGAYANDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWT  60

Query  74   LSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCD  133
             STG L+GHEGAPLVVDG MYIHT FPNN +A+ L+D   +LWQ KPKQNPAARAVACCD
Sbjct  61   FSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCD  120

Query  134  VVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVV  193
            +VNRGLAY P     PA I   QLDG++ ALNA+TGE +WK+ENSDI +GSTLT AP+VV
Sbjct  121  LVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV  180

Query  194  KDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGL  253
            KDKV++GS+GAELGVRGY+TAY++K G+Q WRAYATGPD+DLLL  DFN  NPHYGQ GL
Sbjct  181  KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGL  240

Query  254  GLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDA  313
            G  TWEGDAWKIGGGTNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRDA
Sbjct  241  GTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA  300

Query  314  DTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGAL  372
            DTG AKFGYQKTPHDEWDYAGVN M LSEQ + DGK   LLTHPDRNG+VYTL+R  GAL
Sbjct  301  DTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  360

Query  373  VNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKK  432
            V+A K+DDTVN  K VDLKTG P+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP ++
Sbjct  361  VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRE  420

Query  433  LFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKM  486
            LFFMG+NHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA NA+TG  
Sbjct  421  LFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY  480

Query  487  EWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQH  546
            +WE  E+FAVWGGT+ATAGDLVFYGTLDG++KARD+ TG+L W+F++PSG IG+P+TY H
Sbjct  481  KWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH  540

Query  547  NGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
             G QY+AIY GVGGWPGVGLVFDL DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  541  KGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSL  595


&gt;<input name="getSeqGi" value="296446547" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_06888489" href="http://www.ncbi.nlm.nih.gov/protein/296446547?report=genbank&amp;log$=protalign&amp;blast_rank=11&amp;RID=CJ3JAY4J013">ref|ZP_06888489.1|</a><a name="296446547"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylosinus 
trichosporium OB3b]
 <a title="Show report for EFH02986" href="http://www.ncbi.nlm.nih.gov/protein/296255901?report=genbank&amp;log$=protalign&amp;blast_rank=11&amp;RID=CJ3JAY4J013">gb|EFH02986.1|</a><a name="296255901"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylosinus 
trichosporium OB3b]
Length=624

 Score =  895 bits (2313),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 424/596 (71%), Positives = 501/596 (84%), Gaps = 7/596 (1%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            S+L  A    +    A  +L+ L+K + NWVMQ K+YSA H+S LT+IN+ NVKNLKV+W
Sbjct  12   SVLLAAPFALSAPARAEDKLEALTKSEDNWVMQGKNYSANHYSALTQINTDNVKNLKVSW  71

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            + STG L GHEG+P+VVDG MYIHT FPNN +A++L+D  ++LWQ KPKQN AARAVACC
Sbjct  72   SFSTGLLSGHEGSPIVVDGKMYIHTSFPNNTFALNLDDPTRILWQDKPKQNAAARAVACC  131

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            D+VNRGLAY P     P+ I    LDG++VALNA+TG  +WK+ENSD  +GSTLT AP V
Sbjct  132  DIVNRGLAYWPTDGFTPSLIIKTLLDGNVVALNAETGALVWKIENSDYKVGSTLTVAPHV  191

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
             K+ VL+GS+GAELGVRGY+TAY+++ G+Q+WRAYATGPD D+L+  DFNK NPHYGQ G
Sbjct  192  YKNIVLIGSSGAELGVRGYMTAYDVRTGEQKWRAYATGPDSDVLIGDDFNKANPHYGQKG  251

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
            LG +TWEGDAWKIGGGTNWGW+AYDP  +++YYGSGNPAPWNETMRPGDNKWTMTIWGRD
Sbjct  252  LGTATWEGDAWKIGGGTNWGWFAYDPDTNLVYYGSGNPAPWNETMRPGDNKWTMTIWGRD  311

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGA  371
             +TG AKFGYQKTPHDEWDYAG+N+M LSEQ + +GKL  LLTHPDRNG+VYTL+R  G 
Sbjct  312  LETGEAKFGYQKTPHDEWDYAGINFMMLSEQKDKEGKLRKLLTHPDRNGIVYTLDRTDGT  371

Query  372  LVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDK  431
            LV+A KIDDTVN  KKVDLK+GLP+RDPEY TRMDH AK +CPSAMGYHNQG++SYDP K
Sbjct  372  LVSADKIDDTVNVFKKVDLKSGLPVRDPEYGTRMDHLAKDVCPSAMGYHNQGLDSYDPTK  431

Query  432  KLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGK  485
            +LFF+GVNHICMDWEPFMLPYRAGQFFVGATLNM+PGPKG       LGQ+KA NA+TGK
Sbjct  432  ELFFLGVNHICMDWEPFMLPYRAGQFFVGATLNMFPGPKGDRQKGEGLGQIKAYNAITGK  491

Query  486  MEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQ  545
             +WE  E+FAVWGGT ATAG++VFYGTLDGFIKAR++ TG+L W+F+LPSGVIGHPI YQ
Sbjct  492  FKWEKMERFAVWGGTAATAGNVVFYGTLDGFIKARNSDTGDLLWKFKLPSGVIGHPIVYQ  551

Query  546  HNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            H G +Y+AI  GVGGWPGVGLVFDL+DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  552  HKGVEYVAILYGVGGWPGVGLVFDLQDPTAGLGAVGAFKQLANYTQMGGGVMVFSL  607


&gt;<input name="getSeqGi" value="115525144" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_782055" href="http://www.ncbi.nlm.nih.gov/protein/115525144?report=genbank&amp;log$=protalign&amp;blast_rank=12&amp;RID=CJ3JAY4J013">ref|YP_782055.1|</a><a name="115525144"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=115525144[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=12"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_782055.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodopseudomonas palustris BisA53]
 <a title="Show report for ABJ07075" href="http://www.ncbi.nlm.nih.gov/protein/115519091?report=genbank&amp;log$=protalign&amp;blast_rank=12&amp;RID=CJ3JAY4J013">gb|ABJ07075.1|</a><a name="115519091"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=115519091[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=12"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABJ07075.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodopseudomonas palustris BisA53]
Length=624

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4360825&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=12">GENE ID: 4360825 RPE_3139</a> | Pyrrolo-quinoline quinone
[Rhodopseudomonas palustris BisA53] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  892 bits (2305),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/608 (70%), Positives = 505/608 (83%), Gaps = 8/608 (1%)

Query  1    MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI  60
            M+  + AS    S LA++ + +  +  AN +L  L+K D+NWVM  K+Y++ +FS +T+I
Sbjct  1    MRSARFASLLAVSALALS-IPSGNAALANDKLVELAKSDKNWVMPGKNYNSDNFSPMTQI  59

Query  61   NSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKP  120
            N  NVK LK AW+ STG LHGHEGAPLVVDG+MY+HT FPN  +A+DL D  ++LWQ+KP
Sbjct  60   NDSNVKGLKAAWSFSTGLLHGHEGAPLVVDGVMYVHTSFPNYTFALDLKDPGRILWQHKP  119

Query  121  KQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDI  180
            KQ+PAAR+VACCD+VNRGLAY P   + PA I   QLDG++VALNAKTG+E WK+ENSDI
Sbjct  120  KQDPAARSVACCDLVNRGLAYWPGEGNTPALILKTQLDGNVVALNAKTGDEFWKVENSDI  179

Query  181  AMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKD  240
             +GSTLT AP+VVKD VL+GS+GAELGVRGYVTAY++K G Q WR YATGPDED+ L +D
Sbjct  180  KVGSTLTIAPYVVKDLVLIGSSGAELGVRGYVTAYDVKTGAQRWRYYATGPDEDVGLAED  239

Query  241  FNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPG  300
            FNK NPHYGQ GLG +TWEGDAWKIGGGTNWGWYAYDP  DM YYGSGNPAPWNETMRPG
Sbjct  240  FNKANPHYGQKGLGTATWEGDAWKIGGGTNWGWYAYDPGTDMFYYGSGNPAPWNETMRPG  299

Query  301  DNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRN  359
            DNKWTMTIWGRDA TG+AKFGYQKTPHDEWDYAGVN M LS+Q + +GK   LLTHPDRN
Sbjct  300  DNKWTMTIWGRDASTGKAKFGYQKTPHDEWDYAGVNVMMLSDQKDKNGKARKLLTHPDRN  359

Query  360  GLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGY  419
            G+VYTL+RE G L++A KIDDTVN   +VDLK+G+PIR PE  TRMDH A+ +CPSAMGY
Sbjct  360  GIVYTLDRENGELISADKIDDTVNVFTQVDLKSGIPIRVPEKGTRMDHKARDVCPSAMGY  419

Query  420  HNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------ML  473
            HNQG +SYDPD++LFFMG+NHICMDWEPFMLPYRAGQFFVGATL+M+PGPKG       L
Sbjct  420  HNQGHDSYDPDRQLFFMGINHICMDWEPFMLPYRAGQFFVGATLSMFPGPKGDRQNSLGL  479

Query  474  GQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQL  533
            GQ+KA NA+TGK +WE  EKFAVWGGTL+T G+LVFY TLDGF+KAR   TGEL W+F+L
Sbjct  480  GQIKAYNAITGKYKWEKMEKFAVWGGTLSTKGNLVFYTTLDGFLKARHADTGELLWKFKL  539

Query  534  PSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMG  593
            PSG IG+P+TY+H+G QY+A+  GVGGWPGVGLVFDL+DPTAGLGAVGAF+EL +YTQMG
Sbjct  540  PSGGIGYPMTYEHDGVQYVAVMYGVGGWPGVGLVFDLQDPTAGLGAVGAFKELQNYTQMG  599

Query  594  GSVFVFSL  601
            G V VFSL
Sbjct  600  GGVMVFSL  607


&gt;<input name="getSeqGi" value="217976659" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_002360806" href="http://www.ncbi.nlm.nih.gov/protein/217976659?report=genbank&amp;log$=protalign&amp;blast_rank=13&amp;RID=CJ3JAY4J013">ref|YP_002360806.1|</a><a name="217976659"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=217976659[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=13"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002360806.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Methylocella silvestris BL2]
 <a title="Show report for ACK49444" href="http://www.ncbi.nlm.nih.gov/protein/217502035?report=genbank&amp;log$=protalign&amp;blast_rank=13&amp;RID=CJ3JAY4J013">gb|ACK49444.1|</a><a name="217502035"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=217502035[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=13"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACK49444.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylocella 
silvestris BL2]
Length=625

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=7091203&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=13">GENE ID: 7091203 Msil_0471</a> | PQQ-dependent dehydrogenase
[Methylocella silvestris BL2] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  892 bits (2304),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/603 (71%), Positives = 500/603 (83%), Gaps = 7/603 (1%)

Query  6    LASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNV  65
            L S    +++A++    A    AN +L++LS+ D NWVM  KDY + +FS+LT+IN+ NV
Sbjct  5    LTSVSVATLVAISQFGFAPIASANDKLNQLSQSDDNWVMPGKDYKSDNFSKLTQINASNV  64

Query  66   KNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPA  125
            K LK AW+ STG L+GHEGAPLVVDG M+I +PFPN  +A+DL++   +LW+ KPKQNPA
Sbjct  65   KQLKPAWSFSTGVLNGHEGAPLVVDGKMFISSPFPNTTFALDLDEPGVILWEDKPKQNPA  124

Query  126  ARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGST  185
            ARAVACCDVVNRGLAY P     P+ I   QLDGH+VALNA TGE  WK+ENSDI +GST
Sbjct  125  ARAVACCDVVNRGLAYWPGDGKTPSLILKTQLDGHVVALNAATGEVYWKVENSDIKVGST  184

Query  186  LTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDN  245
            LT AP+VVKD VLVGS+GAELGVRGYVT Y++K G+Q+WRAYATGPD DLLL  DFN  N
Sbjct  185  LTIAPYVVKDIVLVGSSGAELGVRGYVTGYDVKTGEQKWRAYATGPDSDLLLADDFNIKN  244

Query  246  PHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWT  305
            PHYGQ GLG STWEGDAWKIGGGTNWGWYA+DP  +M Y+G+GNPAPWNETMRPGDNKWT
Sbjct  245  PHYGQKGLGTSTWEGDAWKIGGGTNWGWYAFDPDTNMTYFGTGNPAPWNETMRPGDNKWT  304

Query  306  MTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYT  364
            MTI+GRD DTG+A FGYQKTPHDEWD+AGVN M LS+Q + DGKL  LLTHPDRNG+VYT
Sbjct  305  MTIFGRDVDTGKAHFGYQKTPHDEWDFAGVNVMMLSDQKDKDGKLRKLLTHPDRNGIVYT  364

Query  365  LNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGI  424
            L+R  G LV+A KIDDTVN  K+VDLK+G P+RDPE+ TRMDH A+ +CPSAMGYHNQG 
Sbjct  365  LDRTNGDLVSANKIDDTVNVFKQVDLKSGTPVRDPEFGTRMDHLAREVCPSAMGYHNQGH  424

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKA  478
            +SYD +K+LF+MG+NHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA
Sbjct  425  DSYDANKQLFYMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA  484

Query  479  MNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVI  538
             NA+TGK +WE  EKFAVWGGT++TAGDLVFYGTLDGFIKAR+T TGEL W+F+LPSG I
Sbjct  485  YNAITGKFKWEKMEKFAVWGGTMSTAGDLVFYGTLDGFIKARNTDTGELLWKFKLPSGSI  544

Query  539  GHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFV  598
            G+PITY H G QY+AI  GVGGWPGVGLVFDL+DPTAGLGAVGAF++LAHYTQMGG   V
Sbjct  545  GYPITYTHKGIQYVAINYGVGGWPGVGLVFDLQDPTAGLGAVGAFKKLAHYTQMGGGTMV  604

Query  599  FSL  601
            FSL
Sbjct  605  FSL  607


&gt;<input name="getSeqGi" value="163853547" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001641590" href="http://www.ncbi.nlm.nih.gov/protein/163853547?report=genbank&amp;log$=protalign&amp;blast_rank=14&amp;RID=CJ3JAY4J013">ref|YP_001641590.1|</a><a name="163853547"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=163853547[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=14"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001641590.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
extorquens PA1]
 <a title="Show report for YP_002423222" href="http://www.ncbi.nlm.nih.gov/protein/218532406?report=genbank&amp;log$=protalign&amp;blast_rank=14&amp;RID=CJ3JAY4J013">ref|YP_002423222.1|</a><a name="218532406"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=218532406[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=14"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002423222.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
chloromethanicum CM4]
 <a title="Show report for P16027" href="http://www.ncbi.nlm.nih.gov/protein/118577?report=genbank&amp;log$=protalign&amp;blast_rank=14&amp;RID=CJ3JAY4J013">sp|P16027.1|DHM1_METEA</a><a name="118577"></a>  RecName: Full=Methanol dehydrogenase [cytochrome c] subunit 1; 
AltName: Full=MDH large subunit alpha; AltName: Full=MEDH; 
Flags: Precursor
 <a title="Show report for AAA25380" href="http://www.ncbi.nlm.nih.gov/protein/150018?report=genbank&amp;log$=protalign&amp;blast_rank=14&amp;RID=CJ3JAY4J013">gb|AAA25380.1|</a><a name="150018"></a>  methanol dehydrogenase precursor (moxF) [Methylobacterium extorquens]
 <a title="Show report for ABY32519" href="http://www.ncbi.nlm.nih.gov/protein/163665152?report=genbank&amp;log$=protalign&amp;blast_rank=14&amp;RID=CJ3JAY4J013">gb|ABY32519.1|</a><a name="163665152"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=163665152[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=14"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABY32519.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
extorquens PA1]
 <a title="Show report for ACK85294" href="http://www.ncbi.nlm.nih.gov/protein/218524709?report=genbank&amp;log$=protalign&amp;blast_rank=14&amp;RID=CJ3JAY4J013">gb|ACK85294.1|</a><a name="218524709"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=218524709[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=14"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACK85294.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
chloromethanicum CM4]
Length=626

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=5832505&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=14">GENE ID: 5832505 Mext_4150</a> | methanol/ethanol family PQQ-dependent
dehydrogenase [Methylobacterium extorquens PA1] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  890 bits (2299),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/582 (74%), Positives = 490/582 (84%), Gaps = 7/582 (1%)

Query  27   HANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAP  86
            +AN +L  LSK D NWVM  K+Y + +FS L +IN  NVK L+ AWT STG L+GHEGAP
Sbjct  26   YANDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAP  85

Query  87   LVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGE  146
            LVVDG MYIHT FPNN +A+ L+D   +LWQ KPKQNPAARAVACCD+VNRGLAY P   
Sbjct  86   LVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDG  145

Query  147  HGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAEL  206
              PA I   QLDG++ ALNA+TGE +WK+ENSDI +GSTLT AP+VVKDKV++GS+GAEL
Sbjct  146  KTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL  205

Query  207  GVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIG  266
            GVRGY+TAY++K G+Q WRAYATGPD+DLLL  DFN  NPHYGQ GLG  TWEGDAWKIG
Sbjct  206  GVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIG  265

Query  267  GGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTP  326
            GGTNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRDADTG AKFGYQKTP
Sbjct  266  GGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  325

Query  327  HDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWV  385
            HDEWDYAGVN M LSEQ + DGK   LLTHPDRNG+VYTL+R  GALV+A K+DDTVN  
Sbjct  326  HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  385

Query  386  KKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDW  445
            K VDLKTG P+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP ++LFFMG+NHICMDW
Sbjct  386  KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW  445

Query  446  EPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGG  499
            EPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA NA+TG  +WE  E+FAVWGG
Sbjct  446  EPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG  505

Query  500  TLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVG  559
            T+ATAGDLVFYGTLDG++KARD+ TG+L W+F++PSG IG+P+TY H G QY+AIY GVG
Sbjct  506  TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVG  565

Query  560  GWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GWPGVGLVFDL DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  566  GWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSL  607


&gt;<input name="getSeqGi" value="238695868" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ACR55074" href="http://www.ncbi.nlm.nih.gov/protein/238695868?report=genbank&amp;log$=protalign&amp;blast_rank=15&amp;RID=CJ3JAY4J013">gb|ACR55074.1|</a><a name="238695868"></a>  methanol dehydrogenase large subunit-like protein [Methylobacterium 
sp. MB200]
Length=626

 Score =  888 bits (2295),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/580 (74%), Positives = 488/580 (84%), Gaps = 7/580 (1%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N +L  LSK D NWVM  K+Y + +FS L +IN  NVK L+ AWT STG L+GHEGAPLV
Sbjct  28   NDKLVELSKKDENWVMPGKNYDSNNFSELKQINKSNVKQLRPAWTFSTGLLNGHEGAPLV  87

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            VDG MYIHT FPNN +A+ L+D   +LWQ KPKQNPAARAVACCD+VNRGLAY P     
Sbjct  88   VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKT  147

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
            PA I   QLDG++ ALNA+TGE +WK+ENSDI +GSTLT AP+VVKDKV++GS+GAELGV
Sbjct  148  PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV  207

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            RGY+TAY++K G+Q WRAYATGPD+DLLL  DFN  NPHYGQ GLG  TWEGDAWKIGGG
Sbjct  208  RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG  267

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
            TNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRDADTG AKFGYQKTPHD
Sbjct  268  TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  327

Query  329  EWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            EWDYAGVN M LSEQ + DGK   LLTHPDRNG+VYTL+R  G+LV+A K+DDTVN  K 
Sbjct  328  EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGSLVSANKLDDTVNVFKS  387

Query  388  VDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEP  447
            VDLKTG P+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP ++LFFMG+NHICMDWEP
Sbjct  388  VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  447

Query  448  FMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGGTL  501
            FMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA NA+TG  +WE  E+FAVWGGT+
Sbjct  448  FMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTM  507

Query  502  ATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGW  561
            ATAGDLVFYGTLDG++KARD+ TG+L W+F++PSG IG+P+TY H G QY+AIY GVGGW
Sbjct  508  ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGW  567

Query  562  PGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            PGVGLVFDL DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  568  PGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVIVFSL  607


&gt;<input name="getSeqGi" value="14719762" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for 1H4I_A" href="http://www.ncbi.nlm.nih.gov/protein/14719762?report=genbank&amp;log$=protalign&amp;blast_rank=16&amp;RID=CJ3JAY4J013">pdb|1H4I|A</a><a name="14719762"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=14719762&amp;hit=14719762&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=16"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1H4I_A" border="0" height="16" width="16"></a> Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
 <a title="Show report for 1H4I_C" href="http://www.ncbi.nlm.nih.gov/protein/14719764?report=genbank&amp;log$=protalign&amp;blast_rank=16&amp;RID=CJ3JAY4J013">pdb|1H4I|C</a><a name="14719764"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=14719762&amp;hit=14719764&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=16"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1H4I_C" border="0" height="16" width="16"></a> Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
Length=599

 Score =  887 bits (2291),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/580 (74%), Positives = 488/580 (84%), Gaps = 7/580 (1%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N +L  LSK D NWVM  K+Y + +FS L +IN  NVK L+ AWT STG L+GHEGAPLV
Sbjct  1    NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLV  60

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            VDG MYIHT FPNN +A+ L+D   +LWQ KPKQNPAARAVACCD+VNRGLAY P     
Sbjct  61   VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKT  120

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
            PA I   QLDG++ ALNA+TGE +WK+ENSDI +GSTLT AP+VVKDKV++GS+GAELGV
Sbjct  121  PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV  180

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            RGY+TAY++K G+Q WRAYATGPD+DLLL  DFN  NPHYGQ GLG  TWEGDAWKIGGG
Sbjct  181  RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG  240

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
            TNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRDADTG AKFGYQKTPHD
Sbjct  241  TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  300

Query  329  EWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            EWDYAGVN M LSEQ + DGK   LLTHPDRNG+VYTL+R  GALV+A K+DDTVN  K 
Sbjct  301  EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360

Query  388  VDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEP  447
            VDLKTG P+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP ++LFFMG+NHICMDWEP
Sbjct  361  VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420

Query  448  FMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGGTL  501
            FMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA NA+TG  +WE  E+FAVWGGT+
Sbjct  421  FMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTM  480

Query  502  ATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGW  561
            ATAGDLVFYGTLDG++KARD+ TG+L W+F++PSG IG+P+TY H G QY+AIY GVGGW
Sbjct  481  ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGW  540

Query  562  PGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            PGVGLVFDL DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  541  PGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSL  580


&gt;<input name="getSeqGi" value="121608793" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_996600" href="http://www.ncbi.nlm.nih.gov/protein/121608793?report=genbank&amp;log$=protalign&amp;blast_rank=17&amp;RID=CJ3JAY4J013">ref|YP_996600.1|</a><a name="121608793"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=121608793[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=17"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_996600.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Verminephrobacter eiseniae EF01-2]
 <a title="Show report for ABM57582" href="http://www.ncbi.nlm.nih.gov/protein/121553433?report=genbank&amp;log$=protalign&amp;blast_rank=17&amp;RID=CJ3JAY4J013">gb|ABM57582.1|</a><a name="121553433"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=121553433[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=17"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABM57582.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Verminephrobacter eiseniae EF01-2]
Length=620

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4693723&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=17">GENE ID: 4693723 Veis_1829</a> | Pyrrolo-quinoline quinone
[Verminephrobacter eiseniae EF01-2]

 Score =  887 bits (2291),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 429/600 (72%), Positives = 483/600 (81%), Gaps = 12/600 (2%)

Query  4    CKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSH  63
            C L     G MLA  +    Q+  AN EL RL++D + W  Q KDY  +H+S LT+IN  
Sbjct  31   CALRLMLAGGMLAGLS----QTALANDELIRLAQDHKQWAQQGKDYDHSHYSGLTQINRK  86

Query  64   NVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQN  123
            NVK+LK AWT STG LHGHEG PLVV GIMY+HTPFPN  YA+DLND  K+LW++KPKQ+
Sbjct  87   NVKDLKAAWTFSTGVLHGHEGGPLVVGGIMYVHTPFPNITYAIDLNDPNKILWEHKPKQD  146

Query  124  PAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMG  183
             + RAVACCDVVNRGLAY      G  KIF  QLDG +VAL+AKTG+ IW+MENSD ++G
Sbjct  147  ASVRAVACCDVVNRGLAY------GDGKIFKTQLDGRVVALDAKTGKVIWEMENSDPSVG  200

Query  184  STLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNK  243
            STLT AP VV+D V++GS+GAELGVRGYVTAY +KDG+Q WRAYATGPD DLLL  +FN 
Sbjct  201  STLTQAPLVVEDLVIIGSSGAELGVRGYVTAYRMKDGEQVWRAYATGPDSDLLLADNFNA  260

Query  244  DNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNK  303
             NPHYGQ GLG STWEGDAWKIGGGTNWGWYAYDP L  ++YGSGNPAPWNETMRPGDNK
Sbjct  261  TNPHYGQKGLGTSTWEGDAWKIGGGTNWGWYAYDPSLKQLFYGSGNPAPWNETMRPGDNK  320

Query  304  WTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVY  363
            WTM+IW RD  TG+AKF +QKTPHDEWDYAGVN++GLSEQ VDGK   LLTHPDRNG+VY
Sbjct  321  WTMSIWSRDVKTGKAKFAFQKTPHDEWDYAGVNWIGLSEQVVDGKKQKLLTHPDRNGIVY  380

Query  364  TLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQG  423
            TLNRE+G LV A KID TVN  K  D+K G+PIRDPEYSTRMDH AKGICPSAMGYHNQG
Sbjct  381  TLNRESGNLVRADKIDPTVNVFKGYDMKKGVPIRDPEYSTRMDHQAKGICPSAMGYHNQG  440

Query  424  IESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMY--PGPKGMLGQVKAMNA  481
             +SYD  ++L   G N ICMDWEPFMLPYRAGQFFVGATLNMY  PG  G +GQVKA + 
Sbjct  441  HDSYDKKRELMMFGTNMICMDWEPFMLPYRAGQFFVGATLNMYATPGNNGNMGQVKAYDV  500

Query  482  VTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHP  541
             T K +W   EKFAVWGGT  TAGDLVFYGTLDGFIKARD  TG+L WQF+LPSGVIGHP
Sbjct  501  KTSKFKWTKDEKFAVWGGTTTTAGDLVFYGTLDGFIKARDADTGDLLWQFKLPSGVIGHP  560

Query  542  ITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            +TY+H GKQY+AIY GVGGWPGVGLVFDL DPTAGLGAVGAF+EL  YT+MGG + VFSL
Sbjct  561  VTYEHRGKQYVAIYYGVGGWPGVGLVFDLTDPTAGLGAVGAFKELQKYTKMGGGMMVFSL  620


&gt;<input name="getSeqGi" value="357426237" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for CBS89137" href="http://www.ncbi.nlm.nih.gov/protein/357426237?report=genbank&amp;log$=protalign&amp;blast_rank=18&amp;RID=CJ3JAY4J013">emb|CBS89137.1|</a><a name="357426237"></a>  Methanol dehydrogenase, large (alpha) subunit [Azospirillum lipoferum 
4B]
Length=627

 Score =  887 bits (2291),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/596 (71%), Positives = 494/596 (83%), Gaps = 7/596 (1%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            ++ A   + A     AN +L +LS+ ++NWVM  K+Y++ +FS+LT+INS NVK L+ AW
Sbjct  16   TITAGGQIGAVTPALANEKLVQLSESEQNWVMPGKNYNSDNFSKLTQINSDNVKQLRAAW  75

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            + STG L+GHEGAPLVVDG MY+H  FPN+ +A+DL D  ++LWQ+KPKQ+P AR+VACC
Sbjct  76   SFSTGVLNGHEGAPLVVDGKMYVHGAFPNSTFALDLKDPSRILWQHKPKQDPVARSVACC  135

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            D+VNRGLAY P     P  I   QLDGH+VALNA +GEE WK+ENSDI +GSTLT AP+V
Sbjct  136  DIVNRGLAYWPGDGRVPPLILKTQLDGHVVALNANSGEEYWKIENSDIRVGSTLTIAPYV  195

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
            VKD V++GS+GAELGVRGYVTAY++K G   WRA+ATG DE +L+  DFN  NPHYGQ G
Sbjct  196  VKDLVIIGSSGAELGVRGYVTAYDVKTGSMAWRAFATGSDEAMLIGDDFNASNPHYGQKG  255

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
            LGL TWEGDAWKIGGGTNWGWYAYDP +D++YYG+GNPAPWNETMRPGDNKWTMTI+ RD
Sbjct  256  LGLQTWEGDAWKIGGGTNWGWYAYDPGVDLLYYGTGNPAPWNETMRPGDNKWTMTIFARD  315

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGA  371
            A TG+AKFGYQKTPHDEWDYAGVN M LSEQ +  GK   LLTHPDRNG+VYTL+R  G 
Sbjct  316  ASTGKAKFGYQKTPHDEWDYAGVNVMMLSEQKDKSGKTRKLLTHPDRNGIVYTLDRTNGE  375

Query  372  LVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDK  431
            LV+A KIDDTVN    VDLKTG+P+R+PEYSTRMDH ++ ICPSAMGYHNQG +SYDP+K
Sbjct  376  LVSADKIDDTVNVFTHVDLKTGVPVRNPEYSTRMDHTSRDICPSAMGYHNQGHDSYDPNK  435

Query  432  KLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGK  485
            +LFFMG+NHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA N++TG 
Sbjct  436  QLFFMGINHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGDRQGYEGLGQIKAYNSITGD  495

Query  486  MEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQ  545
             +WE  E+FAVWGGTLATAG+LVFYGTLDGFIKAR + TGEL W+F+LPSGVIG+PITY+
Sbjct  496  FKWEKMERFAVWGGTLATAGNLVFYGTLDGFIKARHSDTGELLWKFKLPSGVIGYPITYE  555

Query  546  HNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            H G QY+AI  GVGGWPGVGLVFDL+DPTAGLGAVGAF+ L HYTQMGG V VFSL
Sbjct  556  HAGTQYVAIMYGVGGWPGVGLVFDLQDPTAGLGAVGAFKNLQHYTQMGGGVMVFSL  611


&gt;<input name="getSeqGi" value="220914893" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_002490201" href="http://www.ncbi.nlm.nih.gov/protein/220914893?report=genbank&amp;log$=protalign&amp;blast_rank=19&amp;RID=CJ3JAY4J013">ref|YP_002490201.1|</a><a name="220914893"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=220914893[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=19"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002490201.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
nodulans ORS 2060]
 <a title="Show report for AAG49450" href="http://www.ncbi.nlm.nih.gov/protein/12239379?report=genbank&amp;log$=protalign&amp;blast_rank=19&amp;RID=CJ3JAY4J013">gb|AAG49450.1|AF220764_1</a><a name="12239379"></a>  methanol dehydrogenase MxaF [Methylobacterium nodulans ORS 2060]
 <a title="Show report for ACL63034" href="http://www.ncbi.nlm.nih.gov/protein/219952644?report=genbank&amp;log$=protalign&amp;blast_rank=19&amp;RID=CJ3JAY4J013">gb|ACL63034.1|</a><a name="219952644"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=219952644[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=19"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACL63034.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
nodulans ORS 2060]
Length=629

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=7295869&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=19">GENE ID: 7295869 Mnod_8040</a> | PQQ-dependent dehydrogenase, methanol/ethanol
family [Methylobacterium nodulans ORS 2060]

 Score =  887 bits (2291),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 425/584 (73%), Positives = 492/584 (84%), Gaps = 7/584 (1%)

Query  25   STHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEG  84
            S  AN +L  LSK D NWVM  K+Y + ++S+L +IN+ NVKNLKV+W  STG L+GHEG
Sbjct  28   SALANDKLVELSKSDGNWVMPGKNYDSDNYSKLKQINAENVKNLKVSWQFSTGLLNGHEG  87

Query  85   APLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPA  144
            APLVVDG MY+HT FPNN +A+ L+D  K+LWQ KPKQNPAAR+VACCD+VNRGLAY P 
Sbjct  88   APLVVDGTMYVHTSFPNNTFALGLDDPGKILWQDKPKQNPAARSVACCDLVNRGLAYWPG  147

Query  145  GEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGA  204
                P+ I    LDGH+VALNA+TGE +WK+ENSDI +GSTLT AP+VVKDKV++GS+GA
Sbjct  148  DGKTPSLILKTLLDGHVVALNAQTGETVWKIENSDIRVGSTLTIAPYVVKDKVIIGSSGA  207

Query  205  ELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWK  264
            ELGVRGY+TAY+++ G+Q+WRAYATGPD DLLL KDFN  N HYGQ GLG STWEGDAWK
Sbjct  208  ELGVRGYLTAYDVRTGEQKWRAYATGPDSDLLLAKDFNIHNAHYGQKGLGTSTWEGDAWK  267

Query  265  IGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQK  324
            IGGGTNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+ RD DTG AKFGYQK
Sbjct  268  IGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFARDVDTGEAKFGYQK  327

Query  325  TPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVN  383
            TPHDEWDYAGVN M LS Q +  GK   LLTHPDRNG+VYTL+R  G L++A KIDDTVN
Sbjct  328  TPHDEWDYAGVNVMMLSTQKDRSGKERKLLTHPDRNGIVYTLDRTNGDLISAHKIDDTVN  387

Query  384  WVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICM  443
              K VDLK+GLP+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP++KLF+MG+NHICM
Sbjct  388  VFKTVDLKSGLPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPERKLFYMGINHICM  447

Query  444  DWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVW  497
            DWEPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA +A+TGK +WE  E+FAVW
Sbjct  448  DWEPFMLPYRAGQFFVGATLNMYPGPKGDRQNAEGLGQIKAYDAITGKFKWEKMERFAVW  507

Query  498  GGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSG  557
            GGTLATAG++VFYGTLDGFIKAR + TGEL W+ +LPSG IG+P+TY H G QY+AIY G
Sbjct  508  GGTLATAGNVVFYGTLDGFIKARHSDTGELLWKAKLPSGAIGYPVTYTHKGTQYVAIYYG  567

Query  558  VGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            VGGWPGVGLVFDL+DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  568  VGGWPGVGLVFDLQDPTAGLGAVGAFKKLANYTQMGGGVTVFSL  611


&gt;<input name="getSeqGi" value="119385717" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_916772" href="http://www.ncbi.nlm.nih.gov/protein/119385717?report=genbank&amp;log$=protalign&amp;blast_rank=20&amp;RID=CJ3JAY4J013">ref|YP_916772.1|</a><a name="119385717"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=119385717[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=20"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_916772.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Paracoccus denitrificans PD1222]
 <a title="Show report for ABL71076" href="http://www.ncbi.nlm.nih.gov/protein/119376312?report=genbank&amp;log$=protalign&amp;blast_rank=20&amp;RID=CJ3JAY4J013">gb|ABL71076.1|</a><a name="119376312"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=119376312[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=20"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABL71076.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Paracoccus denitrificans PD1222]
Length=632

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4581559&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=20">GENE ID: 4581559 Pden_2993</a> | Pyrrolo-quinoline quinone
[Paracoccus denitrificans PD1222] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  887 bits (2291),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 422/603 (70%), Positives = 493/603 (82%), Gaps = 12/603 (2%)

Query  11   GGSMLAMA-----AVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNV  65
            G S LAMA     AVL      AN +L  L+KD  NWVM  +DY+A ++S +T+IN  NV
Sbjct  10   GASSLAMAVAMGLAVLTTAPATANDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENV  69

Query  66   KNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPA  125
            K L+ AW+ STG LHGHEG PLVV   M+IHTPFPN  +A+DLN+  K+LWQ KPKQNP 
Sbjct  70   KQLRPAWSFSTGVLHGHEGTPLVVGDRMFIHTPFPNTTFALDLNEPGKILWQNKPKQNPT  129

Query  126  ARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGST  185
            AR VACCDVVNRGLAY P  +     IF  QLDGHIVA++A+TGE  W MENSDI +GST
Sbjct  130  ARTVACCDVVNRGLAYWPGDDQVKPLIFRTQLDGHIVAMDAETGETRWIMENSDIKVGST  189

Query  186  LTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDN  245
            LT AP+V+KD VLVGS+GAELGVRGYVTAY++K G+  WRA+ATGPDE+LLL +DFN  N
Sbjct  190  LTIAPYVIKDLVLVGSSGAELGVRGYVTAYDVKSGEMRWRAFATGPDEELLLAEDFNAPN  249

Query  246  PHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWT  305
            PHYGQ  LGL TWEGDAWKIGGGTNWGWYAYDP++D+ YYGSGNPAPWNETMRPGDNKWT
Sbjct  250  PHYGQKNLGLETWEGDAWKIGGGTNWGWYAYDPEVDLFYYGSGNPAPWNETMRPGDNKWT  309

Query  306  MTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQE-VDGKLTPLLTHPDRNGLVYT  364
            M IWGR+A TG AKF YQKTPHDEWDYAGVN M LSEQE   G++  LLTHPDRNG+VYT
Sbjct  310  MAIWGREATTGEAKFAYQKTPHDEWDYAGVNVMMLSEQEDKQGQMRKLLTHPDRNGIVYT  369

Query  365  LNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGI  424
            L+R  G L++A K+DDTVNWVK+V L TGLP+RDPE+ TRMDH A+ ICPSAMGYHNQG 
Sbjct  370  LDRTNGDLISADKMDDTVNWVKEVQLDTGLPVRDPEFGTRMDHKARDICPSAMGYHNQGH  429

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKA  478
            +SYDP++K+F +G+NHICMDWEPFMLPYRAGQFFVGATL MYPGPKG       LGQ+KA
Sbjct  430  DSYDPERKVFMLGINHICMDWEPFMLPYRAGQFFVGATLTMYPGPKGDRQNALGLGQIKA  489

Query  479  MNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVI  538
             +A++G+M+WE  E+F+VWGGT+ATAG L FYGTLDGFIKARD+ TG+L W+F+LPSGVI
Sbjct  490  YDAISGEMKWEKMERFSVWGGTMATAGGLTFYGTLDGFIKARDSDTGDLLWKFKLPSGVI  549

Query  539  GHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFV  598
            GHP+TY+H+G+QY+AI  GVGGWPGVGLVFDL DPTAGLG+VGAF+ L  +TQMGG V V
Sbjct  550  GHPMTYKHDGRQYVAIMYGVGGWPGVGLVFDLADPTAGLGSVGAFKRLQEFTQMGGGVMV  609

Query  599  FSL  601
            FSL
Sbjct  610  FSL  612


&gt;<input name="getSeqGi" value="58177134" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for 1W6S_A" href="http://www.ncbi.nlm.nih.gov/protein/58177134?report=genbank&amp;log$=protalign&amp;blast_rank=21&amp;RID=CJ3JAY4J013">pdb|1W6S|A</a><a name="58177134"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=58177134&amp;hit=58177134&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=21"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1W6S_A" border="0" height="16" width="16"></a> Chain A, The High Resolution Structure Of Methanol Dehydrogenase 
From Methylobacterium Extorquens
 <a title="Show report for 1W6S_C" href="http://www.ncbi.nlm.nih.gov/protein/58177136?report=genbank&amp;log$=protalign&amp;blast_rank=21&amp;RID=CJ3JAY4J013">pdb|1W6S|C</a><a name="58177136"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=58177134&amp;hit=58177136&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=21"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1W6S_C" border="0" height="16" width="16"></a> Chain C, The High Resolution Structure Of Methanol Dehydrogenase 
From Methylobacterium Extorquens
Length=599

 Score =  885 bits (2288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/580 (74%), Positives = 488/580 (84%), Gaps = 7/580 (1%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N +L  LSK D NWVM  K+Y + +FS L +IN  NVK L+ AWT STG L+GHEGAPLV
Sbjct  1    NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLV  60

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            VDG MYIHT FPNN +A+ L+D   +LWQ KPKQNPAARAVACCD+VNRGLAY P     
Sbjct  61   VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKT  120

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
            PA I   QLDG++ ALNA+TGE +WK+ENSDI +GSTLT AP+VVKDKV++GS+GAELGV
Sbjct  121  PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV  180

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            RGY+TAY++K G+Q WRAYATGPD+DLLL  DFN  NPHYGQ GLG  TWEGDAWKIGGG
Sbjct  181  RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG  240

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
            TNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRDADTG AKFGYQKTPHD
Sbjct  241  TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  300

Query  329  EWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            EWDYAGVN M LSEQ + DGK   LLTHPDRNG+VYTL+R  GALV+A K+DDTVN  K 
Sbjct  301  EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360

Query  388  VDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEP  447
            VDLKTG P+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP ++LFFMG+NHICMDWEP
Sbjct  361  VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420

Query  448  FMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGGTL  501
            FMLPY+AGQFFVGATLNMYPGPKG       LGQ+KA NA+TG  +WE  E+FAVWGGT+
Sbjct  421  FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTM  480

Query  502  ATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGW  561
            ATAGDLVFYGTLDG++KARD+ TG+L W+F++PSG IG+P+TY H G QY+AIY GVGGW
Sbjct  481  ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGW  540

Query  562  PGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            PGVGLVFDL DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  541  PGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSL  580


&gt;<input name="getSeqGi" value="15826668" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for 1H4J_A" href="http://www.ncbi.nlm.nih.gov/protein/15826668?report=genbank&amp;log$=protalign&amp;blast_rank=22&amp;RID=CJ3JAY4J013">pdb|1H4J|A</a><a name="15826668"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=15826668&amp;hit=15826668&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=22"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1H4J_A" border="0" height="16" width="16"></a> Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e 
Mutant
 <a title="Show report for 1H4J_C" href="http://www.ncbi.nlm.nih.gov/protein/15826670?report=genbank&amp;log$=protalign&amp;blast_rank=22&amp;RID=CJ3JAY4J013">pdb|1H4J|C</a><a name="15826670"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=15826668&amp;hit=15826670&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=22"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1H4J_C" border="0" height="16" width="16"></a> Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e 
Mutant
 <a title="Show report for 1H4J_E" href="http://www.ncbi.nlm.nih.gov/protein/15826672?report=genbank&amp;log$=protalign&amp;blast_rank=22&amp;RID=CJ3JAY4J013">pdb|1H4J|E</a><a name="15826672"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=15826668&amp;hit=15826672&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=22"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1H4J_E" border="0" height="16" width="16"></a> Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e 
Mutant
 <a title="Show report for 1H4J_G" href="http://www.ncbi.nlm.nih.gov/protein/15826674?report=genbank&amp;log$=protalign&amp;blast_rank=22&amp;RID=CJ3JAY4J013">pdb|1H4J|G</a><a name="15826674"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=15826668&amp;hit=15826674&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=22"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1H4J_G" border="0" height="16" width="16"></a> Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e 
Mutant
Length=599

 Score =  885 bits (2286),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/580 (74%), Positives = 488/580 (84%), Gaps = 7/580 (1%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N +L  LSK D NWVM  K+Y + +FS L +IN  NVK L+ AWT STG L+GHEGAPLV
Sbjct  1    NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLV  60

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            VDG MYIHT FPNN +A+ L+D   +LWQ KPKQNPAARAVACCD+VNRGLAY P     
Sbjct  61   VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKT  120

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
            PA I   QLDG++ ALNA+TGE +WK+ENSDI +GSTLT AP+VVKDKV++GS+GAELGV
Sbjct  121  PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV  180

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            RGY+TAY++K G+Q WRAYATGPD+DLLL  DFN  NPHYGQ GLG  TWEGDAWKIGGG
Sbjct  181  RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG  240

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
            TNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRDADTG AKFGYQKTPHD
Sbjct  241  TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  300

Query  329  EWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            EW+YAGVN M LSEQ + DGK   LLTHPDRNG+VYTL+R  GALV+A K+DDTVN  K 
Sbjct  301  EWEYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360

Query  388  VDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEP  447
            VDLKTG P+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP ++LFFMG+NHICMDWEP
Sbjct  361  VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420

Query  448  FMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGGTL  501
            FMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA NA+TG  +WE  E+FAVWGGT+
Sbjct  421  FMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTM  480

Query  502  ATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGW  561
            ATAGDLVFYGTLDG++KARD+ TG+L W+F++PSG IG+P+TY H G QY+AIY GVGGW
Sbjct  481  ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGW  540

Query  562  PGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            PGVGLVFDL DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  541  PGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSL  580


&gt;<input name="getSeqGi" value="298294137" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_003696076" href="http://www.ncbi.nlm.nih.gov/protein/298294137?report=genbank&amp;log$=protalign&amp;blast_rank=23&amp;RID=CJ3JAY4J013">ref|YP_003696076.1|</a><a name="298294137"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=298294137[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=23"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003696076.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Starkeya novella DSM 506]
 <a title="Show report for ADH91457" href="http://www.ncbi.nlm.nih.gov/protein/296930648?report=genbank&amp;log$=protalign&amp;blast_rank=23&amp;RID=CJ3JAY4J013">gb|ADH91457.1|</a><a name="296930648"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=296930648[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=23"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADH91457.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Starkeya 
novella DSM 506]
Length=634

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=9335287&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=23">GENE ID: 9335287 Snov_4188</a> | PQQ-dependent dehydrogenase
[Starkeya novella DSM 506]

 Score =  885 bits (2288),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 426/582 (73%), Positives = 485/582 (83%), Gaps = 9/582 (2%)

Query  28   ANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPL  87
            AN +L  LSK+  NW M  K+YSA ++S   +I   NVK L+ AW+ STG L GHEG PL
Sbjct  31   ANDKLVELSKNTDNWPMTGKNYSANNYSEANQITKQNVKQLRPAWSFSTGVLSGHEGTPL  90

Query  88   VVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPA-GE  146
            VVD +MYIH+PFPN  +AV L+D  K+LWQ+KPKQNP ARAVACCDVVNRGLAY P  G 
Sbjct  91   VVDNVMYIHSPFPNTTFAVGLDDPGKILWQHKPKQNPTARAVACCDVVNRGLAYWPGNGT  150

Query  147  HGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAEL  206
             GP  I   QLDGH+VALNAKTGEE WK+ENSDI +GSTLT AP+VVKD VL+GS+GAEL
Sbjct  151  VGPL-IIKTQLDGHVVALNAKTGEEYWKLENSDIKVGSTLTIAPYVVKDTVLIGSSGAEL  209

Query  207  GVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIG  266
            GVRGYVTAY+I  G Q+WRAYATGPD+ ++L  DFN  NPHYGQ GLG +TWEG+AWKIG
Sbjct  210  GVRGYVTAYDIATGAQKWRAYATGPDDQVMLGADFNSANPHYGQKGLGQATWEGEAWKIG  269

Query  267  GGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTP  326
            GGTNWGWYA+DP  ++ YYGSGNPAPWNETMRPGDNKWTMTIWGRD DTG AKFGYQKTP
Sbjct  270  GGTNWGWYAFDPGTNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDIDTGEAKFGYQKTP  329

Query  327  HDEWDYAGVNYMGLSEQE-VDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWV  385
            HDEWDYAGVN M LSEQ+   GK+  LLTHPDRNG+VYTL+RE G L++A KIDDTVNWV
Sbjct  330  HDEWDYAGVNVMMLSEQQDKTGKMRKLLTHPDRNGIVYTLDRENGDLISADKIDDTVNWV  389

Query  386  KKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDW  445
            K+VDLKTGLP RDPEY+TRMDH  + ICPSAMGYHNQG +SYDP++K FFMG+NHICMDW
Sbjct  390  KQVDLKTGLPQRDPEYATRMDHKGRDICPSAMGYHNQGHDSYDPERKSFFMGINHICMDW  449

Query  446  EPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGG  499
            EPFMLPYRAGQFFVGATL MYPGPKG       LGQVKA +A+  K +W+V E+F+ WGG
Sbjct  450  EPFMLPYRAGQFFVGATLWMYPGPKGDRQTYEGLGQVKAYDAINNKYKWQVMERFSAWGG  509

Query  500  TLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVG  559
            TLATAG ++FYGTLDGFIKARD+ TGEL W+F+LPSGVIGHP+TY H GKQY+AIY GVG
Sbjct  510  TLATAGGVMFYGTLDGFIKARDSDTGELLWKFKLPSGVIGHPMTYTHKGKQYVAIYYGVG  569

Query  560  GWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GWPGVGLVFDL DPTAGLG+VGAF++L HYTQMGG V VFSL
Sbjct  570  GWPGVGLVFDLNDPTAGLGSVGAFKQLQHYTQMGGGVMVFSL  611


&gt;<input name="getSeqGi" value="118578" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for P15279" href="http://www.ncbi.nlm.nih.gov/protein/118578?report=genbank&amp;log$=protalign&amp;blast_rank=24&amp;RID=CJ3JAY4J013">sp|P15279.1|DHM1_METOR</a><a name="118578"></a>  RecName: Full=Methanol dehydrogenase [cytochrome c] subunit 1; 
AltName: Full=MDH large subunit alpha; AltName: Full=MEDH; 
Flags: Precursor
 <a title="Show report for AAA50289" href="http://www.ncbi.nlm.nih.gov/protein/556275?report=genbank&amp;log$=protalign&amp;blast_rank=24&amp;RID=CJ3JAY4J013">gb|AAA50289.1|</a><a name="556275"></a>  methanol dehydrogenase [Methylobacterium organophilum]
Length=626

 Score =  885 bits (2287),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 425/582 (73%), Positives = 488/582 (84%), Gaps = 7/582 (1%)

Query  27   HANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAP  86
            +AN +L  LSK D NWVM  K+Y + ++S L ++N  NVK L+ AWT STG L+GHEGAP
Sbjct  26   YANDKLVELSKSDDNWVMPGKNYDSNNYSELKQVNKSNVKQLRPAWTFSTGLLNGHEGAP  85

Query  87   LVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGE  146
            LVVDG MY+HT FPNN +A+DL+D   +LWQ KPKQNPAARAVACCD+VNRGLAY P   
Sbjct  86   LVVDGKMYVHTSFPNNTFALDLDDPGHILWQDKPKQNPAARAVACCDLVNRGLAYWPGDG  145

Query  147  HGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAEL  206
              PA I   QLD H+VALNA+TGE +WK+ENSDI +GSTLT AP+VVKDKV++GS+GAEL
Sbjct  146  KTPALILKTQLDRHVVALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL  205

Query  207  GVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIG  266
            GVRGY+TAY++K G Q WRAYATGPD+DLLL  DFN  N HYGQ GLG +TWEGDAWKIG
Sbjct  206  GVRGYLTAYDVKTGGQVWRAYATGPDKDLLLADDFNVKNAHYGQKGLGTATWEGDAWKIG  265

Query  267  GGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTP  326
            GGTNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRDADTG AKFGYQKTP
Sbjct  266  GGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  325

Query  327  HDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWV  385
            HDEWDYAGVN M  SEQ + DGK   LLTHPDRNG+VYTL+R  GALV+A K+DDTVN  
Sbjct  326  HDEWDYAGVNVMMPSEQKDKDGKTRKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF  385

Query  386  KKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDW  445
            K VDLKTG P+RDPEY TRMDH AK +CPSAMGYHNQG +SYDP ++LFFMG+NHICMDW
Sbjct  386  KTVDLKTGQPVRDPEYGTRMDHLAKDVCPSAMGYHNQGHDSYDPKRELFFMGINHICMDW  445

Query  446  EPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGG  499
            EPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA NA+TG  +WE  E+FAVWGG
Sbjct  446  EPFMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGSYKWEKMERFAVWGG  505

Query  500  TLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVG  559
            TLATAGDLVFYGTLDG++KARD+ TG+L W+F++PSG IG+P+TY H G QY+AIY GVG
Sbjct  506  TLATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVG  565

Query  560  GWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GWPGVGLVFDL DPTAGLGAVGAF++LA+YTQ GG V VFSL
Sbjct  566  GWPGVGLVFDLADPTAGLGAVGAFKKLANYTQQGGGVIVFSL  607


&gt;<input name="getSeqGi" value="340030338" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08666401" href="http://www.ncbi.nlm.nih.gov/protein/340030338?report=genbank&amp;log$=protalign&amp;blast_rank=25&amp;RID=CJ3JAY4J013">ref|ZP_08666401.1|</a><a name="340030338"></a>  Pyrrolo-quinoline quinone [Paracoccus sp. TRP]
Length=617

 Score =  882 bits (2280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/590 (71%), Positives = 489/590 (83%), Gaps = 7/590 (1%)

Query  19   AVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGT  78
            AVL      AN +L  L+KD  NWVM  +DY+A ++S +T+IN  NVK L+ AW+ STG 
Sbjct  8    AVLTTAPATANDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENVKQLRPAWSFSTGV  67

Query  79   LHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRG  138
            LHGHEG PLVV   M+IHTPFPN  +A+DLN+  K+LWQ KPKQNP AR VACCDVVNRG
Sbjct  68   LHGHEGTPLVVGDRMFIHTPFPNTTFALDLNEPGKILWQNKPKQNPTARTVACCDVVNRG  127

Query  139  LAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVL  198
            LAY P  +     IF  QLDGHIVA++A+TGE  W MENSDI +GSTLT AP+V+KD VL
Sbjct  128  LAYWPGDDEVKPLIFRTQLDGHIVAMDAETGETRWIMENSDIKVGSTLTIAPYVIKDLVL  187

Query  199  VGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTW  258
            VGS+GAELGVRGYVTAY++K G+++WRA+ATGPDE+LLL +DFN  NPHYGQ  LGL TW
Sbjct  188  VGSSGAELGVRGYVTAYDVKTGEKKWRAFATGPDEELLLAEDFNAPNPHYGQKNLGLETW  247

Query  259  EGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRA  318
            EGDAWKIGGGTNWGWYAYDP++D+ YYGSGNPAPWNETMRPGDNKWTM IWGR+A TG A
Sbjct  248  EGDAWKIGGGTNWGWYAYDPEVDLFYYGSGNPAPWNETMRPGDNKWTMAIWGREATTGEA  307

Query  319  KFGYQKTPHDEWDYAGVNYMGLSEQE-VDGKLTPLLTHPDRNGLVYTLNRETGALVNAFK  377
            KF YQKTPHDEWDYAGVN M LSEQE  +G +  LLTHPDRNG+VYTL+R  G L++A K
Sbjct  308  KFAYQKTPHDEWDYAGVNVMMLSEQEDKEGNMRKLLTHPDRNGIVYTLDRTNGDLISADK  367

Query  378  IDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMG  437
            +DDTVNWVK+V L TGLP+RDPE+ TRMDH A+ ICPSAMGYHNQG +SYDP++K+F +G
Sbjct  368  MDDTVNWVKEVQLDTGLPVRDPEFGTRMDHKARDICPSAMGYHNQGHDSYDPERKVFMLG  427

Query  438  VNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVP  491
            +NHICMDWEPFMLPYRAGQFFVGATL MYPGPKG       LGQ+KA +A++G+M+WE  
Sbjct  428  INHICMDWEPFMLPYRAGQFFVGATLTMYPGPKGDRQNALGLGQIKAYDAISGEMKWEKM  487

Query  492  EKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQY  551
            E+F+VWGGT+ATAG L FYGTLDGFIKARD+ TG+L W+F+LPSGVIGHP+TY+H+G+QY
Sbjct  488  ERFSVWGGTMATAGGLTFYGTLDGFIKARDSDTGDLLWKFKLPSGVIGHPMTYKHDGRQY  547

Query  552  IAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            +AI  GVGGWPGVGLVFDL DPTAGLG+VGAF+ L  +TQMGG V VFSL
Sbjct  548  VAIMYGVGGWPGVGLVFDLADPTAGLGSVGAFKRLQEFTQMGGGVMVFSL  597


&gt;<input name="getSeqGi" value="188583819" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001927264" href="http://www.ncbi.nlm.nih.gov/protein/188583819?report=genbank&amp;log$=protalign&amp;blast_rank=26&amp;RID=CJ3JAY4J013">ref|YP_001927264.1|</a><a name="188583819"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=188583819[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=26"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001927264.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Methylobacterium populi BJ001]
 <a title="Show report for ACB82729" href="http://www.ncbi.nlm.nih.gov/protein/179347317?report=genbank&amp;log$=protalign&amp;blast_rank=26&amp;RID=CJ3JAY4J013">gb|ACB82729.1|</a><a name="179347317"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=179347317[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=26"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACB82729.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
populi BJ001]
Length=626

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=6313275&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=26">GENE ID: 6313275 Mpop_4632</a> | PQQ-dependent dehydrogenase
[Methylobacterium populi BJ001]

 Score =  882 bits (2280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 424/580 (73%), Positives = 487/580 (84%), Gaps = 7/580 (1%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N +L  LSK D NWVM  K+Y + ++S L +IN  NVK L+ AWT STG L+GHEGAPLV
Sbjct  28   NDKLVELSKSDENWVMPGKNYDSNNYSELKQINKSNVKQLRPAWTFSTGLLNGHEGAPLV  87

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            VDG MYIHT FPNN +A+ L+D   +LWQ KPKQNPAARAVACCD+VNRGLAY P     
Sbjct  88   VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKT  147

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
            PA I   QLDG++ ALNA+TGE +WK+ENSDI +GSTLT AP+VVKDKV++GS+GAELGV
Sbjct  148  PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV  207

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            RGY+TAY++K G Q WRAYATGPD+DLLL  DFN  N HYGQ GLG +TWEGDAWKIGGG
Sbjct  208  RGYLTAYDVKTGAQVWRAYATGPDKDLLLADDFNVKNAHYGQKGLGTATWEGDAWKIGGG  267

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
            TNWGWYAYDP  ++IY+G+GNPAPWNETMRPGDNKWTMTI+GRDADTG AKFGYQKTPHD
Sbjct  268  TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD  327

Query  329  EWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            EWDYAGVN M LS+Q + DGK   LLTHPDRNG+VYTL+R  G+LV+A K+DDTVN  K 
Sbjct  328  EWDYAGVNVMMLSDQKDKDGKSRKLLTHPDRNGIVYTLDRTDGSLVSANKLDDTVNVFKS  387

Query  388  VDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEP  447
            VDLKTG P+RDPEY TRMDH AK ICPSAMGYHNQG +SYDP ++LFFMG+NHICMDWEP
Sbjct  388  VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  447

Query  448  FMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGGTL  501
            FMLPYRAGQFFVGATLNMYPGPKG       LGQ+KA NA+TG  +WE  E+FAVWGGT+
Sbjct  448  FMLPYRAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTM  507

Query  502  ATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGW  561
            ATAGDLVFYGTLDG++KARD+ TG+L W+F++PSG IG+P+TY H G QY+AIY GVGGW
Sbjct  508  ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGW  567

Query  562  PGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            PGVGLVFDL DPTAGLGAVGAF++LA+YTQMGG V VFSL
Sbjct  568  PGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSL  607


&gt;<input name="getSeqGi" value="338737333" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_004674295" href="http://www.ncbi.nlm.nih.gov/protein/338737333?report=genbank&amp;log$=protalign&amp;blast_rank=27&amp;RID=CJ3JAY4J013">ref|YP_004674295.1|</a><a name="338737333"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=338737333[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=27"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004674295.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit alpha [Hyphomicrobium sp. MC1]
 <a title="Show report for CCB63719" href="http://www.ncbi.nlm.nih.gov/protein/337757896?report=genbank&amp;log$=protalign&amp;blast_rank=27&amp;RID=CJ3JAY4J013">emb|CCB63719.1|</a><a name="337757896"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=337757896[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=27"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to CCB63719.1" border="0" height="16" width="16"></a> methanol dehydrogenase, alpha subunit precursor [Hyphomicrobium 
sp. MC1]
Length=631

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=10889715&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=27">GENE ID: 10889715 mxaF</a> | methanol dehydrogenase subunit alpha
[Hyphomicrobium sp. MC1]

 Score =  882 bits (2278),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/599 (71%), Positives = 492/599 (82%), Gaps = 10/599 (2%)

Query  13   SMLAMAAVL---AAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
            S +A+AA +    A S +AN +L  LSK   NWVM  ++Y + ++S   +IN  NVK LK
Sbjct  16   SCMAIAAAMQLGVATSAYANDKLVELSKSKDNWVMPGRNYDSNNYSEDDQINVGNVKQLK  75

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
             AW+ STG LHGHEGAPLVVDG+MY+HT FPN  +A+DLND   +LWQ+ PKQNPAAR+V
Sbjct  76   HAWSFSTGELHGHEGAPLVVDGVMYVHTSFPNKTFALDLNDPGHILWQHSPKQNPAARSV  135

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
            ACCD+VNRGLAY P     PA I   QLDGH+VALNAKTGEE WK+EN+DI +G T T A
Sbjct  136  ACCDLVNRGLAYWPGDGKVPALIIKTQLDGHLVALNAKTGEEYWKVENADIKVGQTETQA  195

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
            P+VVKD  +VGS+GAELGVRGY TAYN+K G+Q WR YATGPD D+ +  DFNK NPHYG
Sbjct  196  PYVVKDLAIVGSSGAELGVRGYTTAYNVKTGEQVWRKYATGPDADIGIGDDFNKANPHYG  255

Query  250  QFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIW  309
            Q GLGL+TWEGDAWKIGGGTNWGWYAYDP L++IYYGSGNPAPWNETMRPGDNKWTMTI 
Sbjct  256  QKGLGLATWEGDAWKIGGGTNWGWYAYDPSLNLIYYGSGNPAPWNETMRPGDNKWTMTIM  315

Query  310  GRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRE  368
             RDADTG  KFGYQKTPHDEWD+AGVN M LSEQ + DGK   LLTHPDRNG+VYTL+R 
Sbjct  316  ARDADTGELKFGYQKTPHDEWDFAGVNVMMLSEQKDKDGKERKLLTHPDRNGIVYTLDRS  375

Query  369  TGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYD  428
             G L++A K+DDTVN  K VDLKTGLP+RDPEY T M+H    ICPSAMGYHNQG +SYD
Sbjct  376  NGDLISANKLDDTVNVFKTVDLKTGLPVRDPEYGTYMNHKGTDICPSAMGYHNQGHDSYD  435

Query  429  PDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAV  482
            P K+LFFMG+NHICMDWEPFMLPYRAGQFFVGATL MYPGPKG       LGQ+KA NA+
Sbjct  436  PKKQLFFMGINHICMDWEPFMLPYRAGQFFVGATLWMYPGPKGDRQNFLGLGQIKAYNAI  495

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            TGK +WE  E+F+VWGGTLATAG+LVFYGTLDGFIKAR++ TGEL W+ +LPSGVIG+P+
Sbjct  496  TGKYKWEHMERFSVWGGTLATAGNLVFYGTLDGFIKARNSDTGELLWKHKLPSGVIGYPM  555

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY+HNG QY+AI SGVGGWPGVGLVFDL+DPTAGLGAVGAF++L +YTQMGGSV VFSL
Sbjct  556  TYEHNGIQYVAIMSGVGGWPGVGLVFDLQDPTAGLGAVGAFKQLQNYTQMGGSVEVFSL  614


&gt;<input name="getSeqGi" value="118581" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for P12293" href="http://www.ncbi.nlm.nih.gov/protein/118581?report=genbank&amp;log$=protalign&amp;blast_rank=28&amp;RID=CJ3JAY4J013">sp|P12293.1|DHM1_PARDE</a><a name="118581"></a>  RecName: Full=Methanol dehydrogenase [cytochrome c] subunit 1; 
AltName: Full=MDH large subunit alpha; AltName: Full=MEDH; 
Flags: Precursor
 <a title="Show report for AAA88366" href="http://www.ncbi.nlm.nih.gov/protein/150588?report=genbank&amp;log$=protalign&amp;blast_rank=28&amp;RID=CJ3JAY4J013">gb|AAA88366.1|</a><a name="150588"></a>  methanol dehydrogenase [Paracoccus denitrificans]
Length=631

 Score =  881 bits (2277),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/602 (70%), Positives = 490/602 (81%), Gaps = 11/602 (2%)

Query  11   GGSMLAMA-----AVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNV  65
            G S LAMA     AVL      AN +L  L+KD  NWVM  +DY+A ++S +T+IN  NV
Sbjct  10   GASSLAMAVAMGLAVLTTAPATANDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENV  69

Query  66   KNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPA  125
            K L+ AW+ STG LHGHEG PLVV   M+IHTPFPN  +A+DLN+  K+LWQ KPKQNP 
Sbjct  70   KQLRPAWSFSTGVLHGHEGTPLVVGDRMFIHTPFPNTTFALDLNEPGKILWQNKPKQNPT  129

Query  126  ARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGST  185
            AR VACCDVVNRGLAY P  +     IF  QLDGHIVA++A+TGE  W MENSDI +GST
Sbjct  130  ARTVACCDVVNRGLAYWPGDDQVKPLIFRTQLDGHIVAMDAETGETRWIMENSDIKVGST  189

Query  186  LTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDN  245
            LT AP+V+KD VLVGS+GAELGVRGYVTAY++K G+  WRA+ATGPDE+LLL +DFN  N
Sbjct  190  LTIAPYVIKDLVLVGSSGAELGVRGYVTAYDVKSGEMRWRAFATGPDEELLLAEDFNAPN  249

Query  246  PHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWT  305
            PHYGQ  LGL TWEGDAWKIGGGTNWGWYAYDP++D+ YYGSGNPAPWNETMRPGDNKWT
Sbjct  250  PHYGQKNLGLETWEGDAWKIGGGTNWGWYAYDPEVDLFYYGSGNPAPWNETMRPGDNKWT  309

Query  306  MTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQE-VDGKLTPLLTHPDRNGLVYT  364
            M IWGR+A TG AKF YQKTPHDEWDYAGVN M LSEQE   G++  LLTHPDRNG+VYT
Sbjct  310  MAIWGREATTGEAKFAYQKTPHDEWDYAGVNVMMLSEQEDKQGQMRKLLTHPDRNGIVYT  369

Query  365  LNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGI  424
            L+R  G L++A K+DDTVNWVK+V L TGLP+RDPE+ TRMDH A+ ICPSAMGYHNQG 
Sbjct  370  LDRTNGDLISADKMDDTVNWVKEVQLDTGLPVRDPEFGTRMDHKARDICPSAMGYHNQGH  429

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGM-----LGQVKAM  479
            +SYDP++K+F +G+NHICMDWEPFMLPYRAGQFFVGATL MYPGPK        GQ+KA 
Sbjct  430  DSYDPERKVFMLGINHICMDWEPFMLPYRAGQFFVGATLTMYPGPKATAERAGAGQIKAY  489

Query  480  NAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIG  539
            +A++G+M+WE  E+F+VWGGT+ATAG L FY TLDGFIKARD+ TG+L W+F+LPSGVIG
Sbjct  490  DAISGEMKWEKMERFSVWGGTMATAGGLTFYVTLDGFIKARDSDTGDLLWKFKLPSGVIG  549

Query  540  HPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVF  599
            HP+TY+H+G+QY+AI  GVGGWPGVGLVFDL DPTAGLG+VGAF+ L  +TQMGG V VF
Sbjct  550  HPMTYKHDGRQYVAIMYGVGGWPGVGLVFDLADPTAGLGSVGAFKRLQEFTQMGGGVMVF  609

Query  600  SL  601
            SL
Sbjct  610  SL  611


&gt;<input name="getSeqGi" value="90423413" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_531783" href="http://www.ncbi.nlm.nih.gov/protein/90423413?report=genbank&amp;log$=protalign&amp;blast_rank=29&amp;RID=CJ3JAY4J013">ref|YP_531783.1|</a><a name="90423413"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=90423413[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=29"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_531783.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodopseudomonas palustris BisB18]
 <a title="Show report for ABD87464" href="http://www.ncbi.nlm.nih.gov/protein/90105427?report=genbank&amp;log$=protalign&amp;blast_rank=29&amp;RID=CJ3JAY4J013">gb|ABD87464.1|</a><a name="90105427"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=90105427[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=29"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABD87464.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodopseudomonas palustris BisB18]
Length=624

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=3973463&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=29">GENE ID: 3973463 RPC_1907</a> | Pyrrolo-quinoline quinone
[Rhodopseudomonas palustris BisB18] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  879 bits (2270),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/589 (71%), Positives = 494/589 (84%), Gaps = 7/589 (1%)

Query  20   VLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTL  79
            V +  +  AN +L  L+K ++NWVM  K+Y++ +FS +T+I+  NVK LK AW+ STG L
Sbjct  19   VPSGNAAFANDKLVELAKSNQNWVMPGKNYNSDNFSPMTQIDDKNVKQLKAAWSFSTGLL  78

Query  80   HGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGL  139
            HGHEGAPLVVDG+MY+HT FPN  +A+DL D   +LWQ+KPKQ+PAAR+VACCD+VNRGL
Sbjct  79   HGHEGAPLVVDGVMYVHTSFPNYTFALDLKDPGHILWQHKPKQDPAARSVACCDLVNRGL  138

Query  140  AYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLV  199
            AY P     P  I   QLDG+++ALNAKTG+E WK+ENSDI +GSTLT AP+VVKD VL+
Sbjct  139  AYWPGDGSTPPLILKTQLDGNVLALNAKTGDEFWKVENSDIKVGSTLTIAPYVVKDLVLI  198

Query  200  GSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWE  259
            GS+GAELGVRGYVTAY++K G Q+WR YATGPDED+ L  DFNK NPHYGQ GLG +TWE
Sbjct  199  GSSGAELGVRGYVTAYDVKTGAQKWRYYATGPDEDIGLADDFNKANPHYGQKGLGTATWE  258

Query  260  GDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAK  319
            GDAWKIGGGTNWGWYAYDP  D+ YYGSGNPAPWNETMRPGDNKWTMTIWGRDA+TG+AK
Sbjct  259  GDAWKIGGGTNWGWYAYDPGTDLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDAETGKAK  318

Query  320  FGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKI  378
            FGYQKTPHDEWDYAGVN M LS+Q + +GK   LLTHPDRNG+VYTL+RE G LV+A KI
Sbjct  319  FGYQKTPHDEWDYAGVNVMMLSDQKDKNGKARKLLTHPDRNGIVYTLDRENGELVSADKI  378

Query  379  DDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGV  438
            DDTVN   +VDLK+G+PIR PE +TRMDH A+ +CPSAMGYHNQG +SYDPD++LFFMG+
Sbjct  379  DDTVNVFTQVDLKSGVPIRVPEKATRMDHVARDVCPSAMGYHNQGHDSYDPDRQLFFMGI  438

Query  439  NHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPE  492
            NHICMDWEPFMLPYRAGQFFVGATL+MYPGPKG       LGQ+KA NA++GK +WE  E
Sbjct  439  NHICMDWEPFMLPYRAGQFFVGATLSMYPGPKGDRQNSLGLGQIKAYNAISGKYKWEKME  498

Query  493  KFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYI  552
            KFAVWGGTLAT G+LVFY TLDGF+KAR   TGEL W+F+LPSG IG+P+TY+H+G QY+
Sbjct  499  KFAVWGGTLATKGNLVFYTTLDGFLKARHADTGELLWKFKLPSGGIGYPMTYEHDGVQYV  558

Query  553  AIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            A+  GVGGWPGVGLVFDL+DPTAGLGAVGAF+EL +YTQMGG V VFSL
Sbjct  559  AVMYGVGGWPGVGLVFDLQDPTAGLGAVGAFKELQNYTQMGGGVMVFSL  607


&gt;<input name="getSeqGi" value="335042021" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08535048" href="http://www.ncbi.nlm.nih.gov/protein/335042021?report=genbank&amp;log$=protalign&amp;blast_rank=30&amp;RID=CJ3JAY4J013">ref|ZP_08535048.1|</a><a name="335042021"></a>  glucose dehydrogenase [Methylophaga aminisulfidivorans MP]
 <a title="Show report for ABN49105" href="http://www.ncbi.nlm.nih.gov/protein/125658551?report=genbank&amp;log$=protalign&amp;blast_rank=30&amp;RID=CJ3JAY4J013">gb|ABN49105.1|</a><a name="125658551"></a>  methanol dehydrogenase large subunit [Methylophaga aminisulfidivorans 
MP]
 <a title="Show report for EGL54517" href="http://www.ncbi.nlm.nih.gov/protein/333788635?report=genbank&amp;log$=protalign&amp;blast_rank=30&amp;RID=CJ3JAY4J013">gb|EGL54517.1|</a><a name="333788635"></a>  glucose dehydrogenase [Methylophaga aminisulfidivorans MP]
Length=627

 Score =  876 bits (2263),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/599 (70%), Positives = 490/599 (82%), Gaps = 9/599 (2%)

Query  12   GSMLAMAAVLAAQS--THANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
            G+ LA+++ L   S  + AN +L  LSK + NWVMQ KD+S TH+S   +IN  NVK L+
Sbjct  13   GTALAVSSALGLMSGMSVANDKLVELSKSNENWVMQGKDFSGTHYSTAKQINKDNVKKLR  72

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
             +W+ STG L+GHEGAPLVV+G MYIHTPFPNN +A+DL++   + W++KPKQ+PAARAV
Sbjct  73   PSWSFSTGVLNGHEGAPLVVNGTMYIHTPFPNNTFAIDLDEPGVIKWEHKPKQDPAARAV  132

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
            ACCDVVNRGLAY P  +  PA I  + LDGH+VALNA+TGEE WK+EN DI++G T T A
Sbjct  133  ACCDVVNRGLAYWPGDDKAPAMIVKSLLDGHVVALNAETGEEYWKVENGDISVGQTETAA  192

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
            PFV KD V+ GS+GAELGVRGYVTAY+I  G+  WR YATGPD D+ LDKDFNK NPHYG
Sbjct  193  PFVAKDLVIQGSSGAELGVRGYVTAYDIHTGEMVWRWYATGPDADVGLDKDFNKHNPHYG  252

Query  250  QFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIW  309
            Q GLG STWE +AWKIGGGTNWGWYAYDP+LDM YYGSGNPAPWNETMRPGDNKWTMTIW
Sbjct  253  QKGLGTSTWEDNAWKIGGGTNWGWYAYDPQLDMFYYGSGNPAPWNETMRPGDNKWTMTIW  312

Query  310  GRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRE  368
            GRD +TG AKFGYQKTPHDEWDYAGVN M LSEQ + +GK+  LLTHPDRNG++YTL+RE
Sbjct  313  GRDLETGLAKFGYQKTPHDEWDYAGVNVMMLSEQKDKNGKMRKLLTHPDRNGIIYTLDRE  372

Query  369  TGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYD  428
            TG LV+A K+DDT NWVKKVDL+TGLPIRDPEY TRM H ++ +CPSAMG+HNQG +SYD
Sbjct  373  TGDLVSANKMDDTANWVKKVDLETGLPIRDPEYGTRMGHRSRDVCPSAMGFHNQGFDSYD  432

Query  429  PDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGML------GQVKAMNAV  482
            P ++LF++G+NH+CMDWEPFMLPYRAGQFFVGA +  YPGPKG        GQVKA NA+
Sbjct  433  PKRELFYLGINHLCMDWEPFMLPYRAGQFFVGANVWTYPGPKGDRQNGIGSGQVKAYNAI  492

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            TG+  WE  EKF+VWGGT AT G LVFYGTLDGFIKARD  TG+L W+F+LPSGVIGHP+
Sbjct  493  TGEFAWEKMEKFSVWGGTTATEGGLVFYGTLDGFIKARDADTGKLLWKFKLPSGVIGHPM  552

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY H G QY+AI  GVGGWP VGLVFDL DP+AGLGAVGAF+ELA  TQMGG V VFSL
Sbjct  553  TYTHKGTQYVAINYGVGGWPAVGLVFDLNDPSAGLGAVGAFKELAKNTQMGGGVMVFSL  611


&gt;<input name="getSeqGi" value="34810619" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for 1LRW_A" href="http://www.ncbi.nlm.nih.gov/protein/34810619?report=genbank&amp;log$=protalign&amp;blast_rank=31&amp;RID=CJ3JAY4J013">pdb|1LRW|A</a><a name="34810619"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=34810619&amp;hit=34810619&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=31"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1LRW_A" border="0" height="16" width="16"></a> Chain A, Crystal Structure Of Methanol Dehydrogenase From P. 
Denitrificans
 <a title="Show report for 1LRW_C" href="http://www.ncbi.nlm.nih.gov/protein/34810621?report=genbank&amp;log$=protalign&amp;blast_rank=31&amp;RID=CJ3JAY4J013">pdb|1LRW|C</a><a name="34810621"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=34810619&amp;hit=34810621&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=31"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1LRW_C" border="0" height="16" width="16"></a> Chain C, Crystal Structure Of Methanol Dehydrogenase From P. 
Denitrificans
Length=600

 Score =  874 bits (2259),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 411/580 (71%), Positives = 482/580 (83%), Gaps = 7/580 (1%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N +L  L+KD  NWVM  +DY+A ++S +T+IN  NVK L+ AW+ STG LHGHEG PLV
Sbjct  1    NDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENVKQLRPAWSFSTGVLHGHEGTPLV  60

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            V   M+IHTPFPN  +A+DLN+  K+LWQ KPKQNP AR VACCDVVNRGLAY P  +  
Sbjct  61   VGDRMFIHTPFPNTTFALDLNEPGKILWQNKPKQNPTARTVACCDVVNRGLAYWPGDDQV  120

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
               IF  QLDGHIVA++A+TGE  W MENSDI +GSTLT AP+V+KD VLVGS+GAELGV
Sbjct  121  KPLIFRTQLDGHIVAMDAETGETRWIMENSDIKVGSTLTIAPYVIKDLVLVGSSGAELGV  180

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            RGYVTAY++K G+  WRA+ATGPDE+LLL +DFN  NPHYGQ  LGL TWEGDAWKIGGG
Sbjct  181  RGYVTAYDVKSGEMRWRAFATGPDEELLLAEDFNAPNPHYGQKNLGLETWEGDAWKIGGG  240

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
            TNWGWYAYDP++D+ YYGSGNPAPWNETMRPGDNKWTM IWGR+A TG AKF YQKTPHD
Sbjct  241  TNWGWYAYDPEVDLFYYGSGNPAPWNETMRPGDNKWTMAIWGREATTGEAKFAYQKTPHD  300

Query  329  EWDYAGVNYMGLSEQE-VDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            EWDYAGVN M LSEQE   G++  LLTHPDRNG+VYTL+R  G L++A K+DDTVNWVK+
Sbjct  301  EWDYAGVNVMMLSEQEDKQGQMRKLLTHPDRNGIVYTLDRTNGDLISADKMDDTVNWVKE  360

Query  388  VDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEP  447
            V L TGLP+RDPE+ TRMDH A+ ICPSAMGYHNQG +SYDP++K+F +G+NHICMDWEP
Sbjct  361  VQLDTGLPVRDPEFGTRMDHKARDICPSAMGYHNQGHDSYDPERKVFMLGINHICMDWEP  420

Query  448  FMLPYRAGQFFVGATLNMYPGPKGM------LGQVKAMNAVTGKMEWEVPEKFAVWGGTL  501
            FMLPYRAGQFFVGATL MYPGPKG       LGQ+KA +A++G+M+WE  E+F+VWGGT+
Sbjct  421  FMLPYRAGQFFVGATLTMYPGPKGDRGNASGLGQIKAYDAISGEMKWEKMERFSVWGGTM  480

Query  502  ATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGW  561
            ATAG L FY TLDGFIKARD+ TG+L W+F+LPSGVIGHP+TY+H+G+QY+AI  GVGGW
Sbjct  481  ATAGGLTFYATLDGFIKARDSDTGDLLWKFKLPSGVIGHPMTYKHDGRQYVAIMYGVGGW  540

Query  562  PGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            PGVGLVFDL DPTAGLG+VGAF+ L  +TQMGG V VFSL
Sbjct  541  PGVGLVFDLADPTAGLGSVGAFKRLQEFTQMGGGVMVFSL  580


&gt;<input name="getSeqGi" value="254491170" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_05104351" href="http://www.ncbi.nlm.nih.gov/protein/254491170?report=genbank&amp;log$=protalign&amp;blast_rank=32&amp;RID=CJ3JAY4J013">ref|ZP_05104351.1|</a><a name="254491170"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylophaga 
thiooxidans DMS010]
 <a title="Show report for EEF79951" href="http://www.ncbi.nlm.nih.gov/protein/224463683?report=genbank&amp;log$=protalign&amp;blast_rank=32&amp;RID=CJ3JAY4J013">gb|EEF79951.1|</a><a name="224463683"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylophaga 
thiooxydans DMS010]
Length=627

 Score =  869 bits (2246),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/599 (69%), Positives = 485/599 (81%), Gaps = 9/599 (2%)

Query  12   GSMLAMAAVLAAQS--THANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
            G+ LA+++ +   S    AN +L  L + + NWVMQ KD+S TH+S  T+IN  NVK L+
Sbjct  13   GTALAVSSAIGMMSGMAVANEKLVELQQSNENWVMQGKDFSGTHYSTATQINKKNVKRLR  72

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
             +W+ STG L+GHEGAPLV+DG M+IHTPFPNN +AVDL++   + W++KPKQ+PAARAV
Sbjct  73   PSWSFSTGVLNGHEGAPLVIDGTMFIHTPFPNNTFAVDLDEPGVIKWEHKPKQDPAARAV  132

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
            ACCDVVNRGLAY P  +  PA I  +QLDGH+VALNA+TGE  WK+EN+DI++G T T A
Sbjct  133  ACCDVVNRGLAYWPGDDKTPAMIVKSQLDGHVVALNAETGEVHWKVENADISVGQTETAA  192

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
            PFV KD V+ GS+GAELGVRGYVTAY+I  G+  WR YATGPD D+ L KDFN DNPHYG
Sbjct  193  PFVAKDLVIQGSSGAELGVRGYVTAYDIHTGEMAWRWYATGPDSDIGLQKDFNSDNPHYG  252

Query  250  QFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIW  309
            Q  LG+STWE  AWKIGGGTNWGWYAYDP LDM YYGSGNPAPWNETMRPGDNKWTMTIW
Sbjct  253  QKNLGVSTWEDKAWKIGGGTNWGWYAYDPDLDMFYYGSGNPAPWNETMRPGDNKWTMTIW  312

Query  310  GRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRE  368
            GRD +TG AKFGYQKTPHDEWDYAGVN M LSEQ + +GK+  LLTHPDRNG+VYTL+RE
Sbjct  313  GRDLETGLAKFGYQKTPHDEWDYAGVNVMMLSEQKDKNGKMRKLLTHPDRNGIVYTLDRE  372

Query  369  TGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYD  428
            TG LV+A K+DDT NWVKKVDL+TGLPIRDPEY TRM H ++ ICPSAMG+HNQG +SYD
Sbjct  373  TGDLVSANKMDDTANWVKKVDLETGLPIRDPEYGTRMGHRSRDICPSAMGFHNQGFDSYD  432

Query  429  PDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGML------GQVKAMNAV  482
            P ++LF++G+NH+CMDWEPFMLPYRAGQFFVGA +  YPGPKG        GQVKA NA+
Sbjct  433  PKRELFYLGINHLCMDWEPFMLPYRAGQFFVGANVWTYPGPKGDRQNGVGSGQVKAYNAI  492

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            TG   WE  EKF++WGGT+ATAG LV YGTLDGFIKARD   GEL W+F+LPSG IGHP+
Sbjct  493  TGDFAWEKMEKFSIWGGTMATAGGLVVYGTLDGFIKARDADNGELLWKFKLPSGAIGHPM  552

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY H G QY+AI  GVGGWP VGLVFDL DP+AGLGAVGAF+ELA  TQMGG V VF+L
Sbjct  553  TYTHEGTQYVAINYGVGGWPAVGLVFDLNDPSAGLGAVGAFKELARNTQMGGGVMVFAL  611


&gt;<input name="getSeqGi" value="2588997" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for BAA23272" href="http://www.ncbi.nlm.nih.gov/protein/2588997?report=genbank&amp;log$=protalign&amp;blast_rank=33&amp;RID=CJ3JAY4J013">dbj|BAA23272.1|</a><a name="2588997"></a>  methanol dehydrogenase alpha subunit [Hyphomicrobium methylovorum]
Length=633

 Score =  866 bits (2238),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/599 (69%), Positives = 490/599 (82%), Gaps = 10/599 (2%)

Query  13   SMLAMAAVL---AAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
            S +A+A  L    A S +AN +L  LSK + NWVM  K+Y + ++S  T++N+ NVK LK
Sbjct  16   SCMAIAVALQVGVASSAYANDKLIELSKSNENWVMPGKNYDSNNYSESTQVNAENVKQLK  75

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
             AW+ STG LHGHEGAPLV+  +MY+H+ FPN  +A++LND   +LWQ+ PKQ+PAAR+V
Sbjct  76   HAWSFSTGELHGHEGAPLVIGDMMYVHSSFPNKTFALNLNDPGHILWQHSPKQDPAARSV  135

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
            ACCD+VNRGLAY P  +  PA +   QLDGH+VALNAKTGEE WK+EN DI +G TLT A
Sbjct  136  ACCDLVNRGLAYWPGDDKTPALVIKTQLDGHLVALNAKTGEEFWKVENGDIKVGQTLTQA  195

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
            P+VV D  +VGS+GAELGVRG+VTAYN+K G+Q WR YATGPDE++ L  DFN  NPHYG
Sbjct  196  PYVVHDLAIVGSSGAELGVRGHVTAYNVKTGEQAWRYYATGPDEEIGLADDFNSANPHYG  255

Query  250  QFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIW  309
            Q GLG +TWEGDAWKIGGGTNWGWYAYDP+ ++IYYGSGNPAPWNETMRPGDNKWTMTI 
Sbjct  256  QKGLGTATWEGDAWKIGGGTNWGWYAYDPQANLIYYGSGNPAPWNETMRPGDNKWTMTIT  315

Query  310  GRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRE  368
             RDADTG+ KFGYQKTPHDEWD+AGVN + LSEQ + +GK   LLTHPDRNG+VYTL+RE
Sbjct  316  ARDADTGKMKFGYQKTPHDEWDFAGVNVIMLSEQTDKEGKKRKLLTHPDRNGIVYTLDRE  375

Query  369  TGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYD  428
             G L++A K+DDTVN  K VDLK+GLP+RDPE+ TRMDH    ICPSAMGYHNQG +SYD
Sbjct  376  NGDLISADKLDDTVNVFKHVDLKSGLPVRDPEFGTRMDHKGTEICPSAMGYHNQGHDSYD  435

Query  429  PDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAV  482
            P K+LFFMG+NHICMDWEPFMLPYRAGQFFVGATL MYPGPKG       LGQ+KA NA+
Sbjct  436  PTKQLFFMGINHICMDWEPFMLPYRAGQFFVGATLWMYPGPKGDRQNYLGLGQIKAYNAI  495

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            T   +WE  E+F+VWGGTLATAG+LVFYGTLDGF+KAR++ TGEL W+ +LPSGVIG+P+
Sbjct  496  TNTYKWEHMERFSVWGGTLATAGNLVFYGTLDGFLKARNSDTGELLWKHKLPSGVIGYPM  555

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY+H G QYIA+ SGVGGWPGVGLVFDL+DPTAGLGAVGAF+ L  YTQMGGS+ VFSL
Sbjct  556  TYEHKGVQYIAVMSGVGGWPGVGLVFDLQDPTAGLGAVGAFKNLQRYTQMGGSLEVFSL  614


&gt;<input name="getSeqGi" value="114327008" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_744165" href="http://www.ncbi.nlm.nih.gov/protein/114327008?report=genbank&amp;log$=protalign&amp;blast_rank=34&amp;RID=CJ3JAY4J013">ref|YP_744165.1|</a><a name="114327008"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114327008[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=34"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_744165.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit 1 [Granulibacter bethesdensis 
CGDNIH1]
 <a title="Show report for ABI61242" href="http://www.ncbi.nlm.nih.gov/protein/114315182?report=genbank&amp;log$=protalign&amp;blast_rank=34&amp;RID=CJ3JAY4J013">gb|ABI61242.1|</a><a name="114315182"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114315182[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=34"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABI61242.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit 1 [Granulibacter bethesdensis 
CGDNIH1]
Length=625

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4276538&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=34">GENE ID: 4276538 GbCGDNIH1_0344</a> | methanol dehydrogenase subunit 1
[Granulibacter bethesdensis CGDNIH1] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  863 bits (2229),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 412/603 (68%), Positives = 487/603 (81%), Gaps = 9/603 (1%)

Query  6    LASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNV  65
            LAS    ++L +AA   A S  A  +L  LSK + NW+M  + Y A ++S L +I + NV
Sbjct  9    LASASLCAVLGVAA--GATSAMAEDKLIELSKSNENWLMPGRTYEAQNYSPLKQITTKNV  66

Query  66   KNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPA  125
            K+LKVAWT S G L+GHEGAPLVV+  MY+  PFPN  +A+ L++  +++W+  PKQ+  
Sbjct  67   KDLKVAWTFSDGVLNGHEGAPLVVNNTMYVTGPFPNRTFALGLDNPGRIIWENNPKQSAN  126

Query  126  ARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGST  185
            AR+VACCDVVNRG+AY P     PA IF N LDG + A+NAKTG+ +W+MEN DI +G T
Sbjct  127  ARSVACCDVVNRGMAYWPGDSKTPALIFKNLLDGRLTAMNAKTGDVVWQMENGDIKVGQT  186

Query  186  LTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDN  245
             T AP+VVKD V+ GS+GAELGVRG++TAY++  G Q+WRAY TGPD DLLL KDFN  N
Sbjct  187  ETQAPYVVKDLVITGSSGAELGVRGFITAYDVHTGAQKWRAYETGPDSDLLLAKDFNIHN  246

Query  246  PHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWT  305
            P YGQFGLG  TW+ + WKIGGGTNWGWYAYDP  ++IYYGSGNPAPWN TMRPGDNKWT
Sbjct  247  PQYGQFGLGTETWQEETWKIGGGTNWGWYAYDPGTNLIYYGSGNPAPWNATMRPGDNKWT  306

Query  306  MTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYT  364
            MTI+GRDADTG AKFGYQKTPHDEWDYAGVN M LSEQ + DGKL  LLTHPDRNG+VYT
Sbjct  307  MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKLRKLLTHPDRNGIVYT  366

Query  365  LNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGI  424
            L+R  G LV+A KIDDTVNWVK VDLKTG+P+RDPEY+T MDH  + ICPSAMGYHNQG 
Sbjct  367  LDRTNGDLVSANKIDDTVNWVKHVDLKTGIPVRDPEYATYMDHKGRDICPSAMGYHNQGF  426

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGM------LGQVKA  478
            +SY P+K+ FF+GVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG       LGQ+K+
Sbjct  427  DSYSPEKQQFFLGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGNRQTYEGLGQIKS  486

Query  479  MNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVI  538
             NA+TG+ +W+  E+FAVWGGT+ATAG+LVFYGTLDGFIKAR+  TGEL W+F+LPSGVI
Sbjct  487  YNAITGQFKWQKMERFAVWGGTMATAGNLVFYGTLDGFIKARNQDTGELLWKFKLPSGVI  546

Query  539  GHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFV  598
            G+PITY+H G QY+AIY GVGGWPGVG+VFDL DP+AGLGAVGAF+ELAHYTQ GG VFV
Sbjct  547  GYPITYEHKGTQYVAIYYGVGGWPGVGMVFDLNDPSAGLGAVGAFKELAHYTQQGGGVFV  606

Query  599  FSL  601
            FSL
Sbjct  607  FSL  609


&gt;<input name="getSeqGi" value="300022845" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_003755456" href="http://www.ncbi.nlm.nih.gov/protein/300022845?report=genbank&amp;log$=protalign&amp;blast_rank=35&amp;RID=CJ3JAY4J013">ref|YP_003755456.1|</a><a name="300022845"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=300022845[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=35"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003755456.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Hyphomicrobium 
denitrificans ATCC 51888]
 <a title="Show report for ADJ23135" href="http://www.ncbi.nlm.nih.gov/protein/299524666?report=genbank&amp;log$=protalign&amp;blast_rank=35&amp;RID=CJ3JAY4J013">gb|ADJ23135.1|</a><a name="299524666"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=299524666[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=35"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADJ23135.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Hyphomicrobium 
denitrificans ATCC 51888]
Length=629

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=9387215&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=35">GENE ID: 9387215 Hden_1323</a> | methanol/ethanol family PQQ-dependent
dehydrogenase [Hyphomicrobium denitrificans ATCC 51888]

 Score =  862 bits (2228),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/599 (69%), Positives = 488/599 (81%), Gaps = 10/599 (2%)

Query  13   SMLAMAAVL---AAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
            S +A+AA +   AA S  AN +L  LS  + NWVM  K+Y + ++S  T+IN  NVK LK
Sbjct  14   SCMALAAAVHMGAATSALANDKLIELSNSNENWVMPGKNYDSNNYSTSTQINVDNVKQLK  73

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
             AW+ STG LHGHEGAPLV+  +MY+H+ FPN  +A+DLND   +LWQ+ PKQ+PAAR+V
Sbjct  74   HAWSFSTGELHGHEGAPLVIGDVMYVHSSFPNKTFALDLNDPGHILWQHSPKQDPAARSV  133

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
            ACCD+VNRGLAY P  +  P+ I   QLDGH+VALNAKTGEE WK+EN DI +G TLT A
Sbjct  134  ACCDLVNRGLAYWPGDDKTPSLIIKTQLDGHLVALNAKTGEEFWKVENGDIKVGQTLTQA  193

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
            P+VV D  +VGS+GAELGVRG+VTAYN++ G+Q WR YATGPD ++ L  DFN  NPHYG
Sbjct  194  PYVVHDLAIVGSSGAELGVRGHVTAYNVRTGEQAWRYYATGPDAEIGLADDFNSANPHYG  253

Query  250  QFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIW  309
            Q GLG +TWEGDAWKIGGGTNWGWYAYDP  ++IYYGSGNPAPWNETMRPGDNKWTMTI 
Sbjct  254  QKGLGTATWEGDAWKIGGGTNWGWYAYDPAANLIYYGSGNPAPWNETMRPGDNKWTMTIT  313

Query  310  GRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRE  368
             RDADTG+ KFGYQKTPHDEWD+AGVN + LSEQ +  GK   LLTHPDRNG+VYTL+RE
Sbjct  314  ARDADTGKMKFGYQKTPHDEWDFAGVNVIMLSEQTDKTGKKRKLLTHPDRNGIVYTLDRE  373

Query  369  TGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYD  428
             G L++A K+DDTVN  K VDLKTGLP+RDPEY TRMDH    ICPSAMGYHNQG +SYD
Sbjct  374  NGDLISADKLDDTVNVFKTVDLKTGLPVRDPEYGTRMDHKGTDICPSAMGYHNQGHDSYD  433

Query  429  PDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAV  482
            P K+LFFMG+NHICMDWEPFMLPYRAGQFFVGATL MYPGPKG       LGQ+KA NA+
Sbjct  434  PQKQLFFMGINHICMDWEPFMLPYRAGQFFVGATLWMYPGPKGDRQNYLGLGQIKAYNAI  493

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            T + +W+  E+F+VWGGTLATAG+LVFYGTLDGF+KAR++ TG+L W+ +LPSGVIG+P+
Sbjct  494  TNEYKWQHMERFSVWGGTLATAGNLVFYGTLDGFLKARNSDTGQLVWKHKLPSGVIGYPM  553

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY+H G QYIA+ SGVGGWPGVGLVFDL+DPTAGLGAVGAF+ L +YTQMGGS+ VFSL
Sbjct  554  TYEHKGVQYIAVMSGVGGWPGVGLVFDLQDPTAGLGAVGAFKNLQNYTQMGGSLEVFSL  612


&gt;<input name="getSeqGi" value="335421155" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08552182" href="http://www.ncbi.nlm.nih.gov/protein/335421155?report=genbank&amp;log$=protalign&amp;blast_rank=36&amp;RID=CJ3JAY4J013">ref|ZP_08552182.1|</a><a name="335421155"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family protein 
[Salinisphaera shabanensis E1L3A]
 <a title="Show report for ZP_08552306" href="http://www.ncbi.nlm.nih.gov/protein/335421282?report=genbank&amp;log$=protalign&amp;blast_rank=36&amp;RID=CJ3JAY4J013">ref|ZP_08552306.1|</a><a name="335421282"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family protein 
[Salinisphaera shabanensis E1L3A]
 <a title="Show report for EGM30480" href="http://www.ncbi.nlm.nih.gov/protein/334892242?report=genbank&amp;log$=protalign&amp;blast_rank=36&amp;RID=CJ3JAY4J013">gb|EGM30480.1|</a><a name="334892242"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family protein 
[Salinisphaera shabanensis E1L3A]
 <a title="Show report for EGM30966" href="http://www.ncbi.nlm.nih.gov/protein/334892737?report=genbank&amp;log$=protalign&amp;blast_rank=36&amp;RID=CJ3JAY4J013">gb|EGM30966.1|</a><a name="334892737"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family protein 
[Salinisphaera shabanensis E1L3A]
Length=594

 Score =  861 bits (2224),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/564 (71%), Positives = 476/564 (84%), Gaps = 6/564 (1%)

Query  44   MQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNV  103
            MQ K+Y   HFS  T++N+ NV+NL  AW+ STG L+GHEGAP+VVDG+MYI+ P+PNNV
Sbjct  1    MQCKNYDCNHFSESTQVNAENVQNLTPAWSFSTGVLNGHEGAPIVVDGMMYINGPYPNNV  60

Query  104  YAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVA  163
            +A+DL+D  +++WQYKPKQ+PAAR+VACCDVVNRGLAY P     P  +    LDGH++A
Sbjct  61   FALDLDDPNRIVWQYKPKQDPAARSVACCDVVNRGLAYYPGDGDTPPLVIETLLDGHLLA  120

Query  164  LNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQE  223
            LNA+TGE+ WK+E  D ++G TLT +P+VVKDKV+VGS+GAELGVRG VTA+N+K G+QE
Sbjct  121  LNAETGEQYWKLEVMDPSVGQTLTQSPYVVKDKVIVGSSGAELGVRGVVTAFNVKTGEQE  180

Query  224  WRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMI  283
            WRAYATGPDEDLLL  DFN +NP YGQ GLG  TWEGDAWKIGGGTNWGWYAYDP+ ++ 
Sbjct  181  WRAYATGPDEDLLLADDFNINNPQYGQEGLGTKTWEGDAWKIGGGTNWGWYAYDPEEELF  240

Query  284  YYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ  343
            YYGSGNPAPWNETMRPGDNKWTMTI+GRD +TG AKFGYQKTPHDEWDYAGVN M LSEQ
Sbjct  241  YYGSGNPAPWNETMRPGDNKWTMTIFGRDLETGEAKFGYQKTPHDEWDYAGVNVMMLSEQ  300

Query  344  EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYST  403
            E+DG+   LLTHPDRNG++Y+L+R  G LV A K+DDTVNWVK VD+++G P+RDPEY T
Sbjct  301  EIDGEKRKLLTHPDRNGILYSLDRTNGDLVRADKMDDTVNWVKHVDMESGQPVRDPEYGT  360

Query  404  RMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATL  463
            RMDH +K ICPSAMGYHNQG++SYDP+++LFF+G+NH+CMDWEP+MLPYRAGQFFVGA +
Sbjct  361  RMDHRSKDICPSAMGYHNQGVDSYDPNQQLFFIGMNHLCMDWEPYMLPYRAGQFFVGANV  420

Query  464  NMYPGPKGML------GQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFI  517
              YPGPKG        GQVKA +A TG  +WEV E+FAVWGGT ATAG+LVFYGTLDGFI
Sbjct  421  WTYPGPKGNREEGTGSGQVKAYDAKTGDFKWEVMERFAVWGGTTATAGNLVFYGTLDGFI  480

Query  518  KARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGL  577
            KARD+RTGEL W+F+LPSGVIGHPITY H+G QY+ I  GVGGWPGVGLVFDL DP+AGL
Sbjct  481  KARDSRTGELLWKFKLPSGVIGHPITYMHDGTQYVGINYGVGGWPGVGLVFDLNDPSAGL  540

Query  578  GAVGAFRELAHYTQMGGSVFVFSL  601
            GAVGAF+ELA++TQMGG    FSL
Sbjct  541  GAVGAFKELANHTQMGGGFIAFSL  564


&gt;<input name="getSeqGi" value="154520215" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ABS82782" href="http://www.ncbi.nlm.nih.gov/protein/154520215?report=genbank&amp;log$=protalign&amp;blast_rank=37&amp;RID=CJ3JAY4J013">gb|ABS82782.1|</a><a name="154520215"></a>  methanol dehydrogenase large subunit [uncultured Methylophaga 
sp.]
Length=628

 Score =  858 bits (2217),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/596 (69%), Positives = 486/596 (82%), Gaps = 10/596 (2%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            S++ M  V AA    AN +L  L KD+ NWVMQ K+YSA H+S   +IN  NV  L  +W
Sbjct  20   SVIGMMTVGAA---FANDKLVELQKDEANWVMQGKNYSADHYSTSKQINKKNVSKLSPSW  76

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            T STG L+GHEGAPLV+  +MYIH+PFPNN +A++LND   ++W++KPKQ+PAARAVACC
Sbjct  77   TFSTGVLNGHEGAPLVIGDMMYIHSPFPNNTFAINLNDPGTIVWEHKPKQDPAARAVACC  136

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            DVVNRGLAY P  +  PA I  +QLDGH+VALNA+TGE  W++EN DI++G T T APFV
Sbjct  137  DVVNRGLAYWPGDDKTPAMIVKSQLDGHVVALNAETGELHWQVENGDISVGQTQTQAPFV  196

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
            VKD V+ GS+GAELGVRGYVTA++I  G+  WR YATGPD ++ L KDFN  NPHYGQ  
Sbjct  197  VKDLVIQGSSGAELGVRGYVTAFDIHTGEMAWRWYATGPDSEIGLAKDFNSANPHYGQKD  256

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
            LGL TWE +AWKIGGGTNWGWYAYDP L+M YYGSGNPAPWNETMRPGDNKWTMTIWGRD
Sbjct  257  LGLKTWEDEAWKIGGGTNWGWYAYDPDLEMFYYGSGNPAPWNETMRPGDNKWTMTIWGRD  316

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGA  371
            ADTG AKFGYQKTPHDEWDYAGVN M LSEQ + +GK+  LLTHPDRNG++YTL+RETG 
Sbjct  317  ADTGLAKFGYQKTPHDEWDYAGVNVMMLSEQKDKNGKMRKLLTHPDRNGIIYTLDRETGD  376

Query  372  LVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDK  431
            LV+A K+D+T NWVKKVDL+TGLPIRDPE+STRM H ++ ICPSAMG+HNQG++SYDP++
Sbjct  377  LVSADKMDETANWVKKVDLETGLPIRDPEFSTRMGHRSRDICPSAMGFHNQGMDSYDPER  436

Query  432  KLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGML------GQVKAMNAVTGK  485
            + F++G+NH+CMDWEPFMLPYRAGQFFVGA +  YPGPKG        GQVKA NA+TG+
Sbjct  437  QNFYLGINHLCMDWEPFMLPYRAGQFFVGANVWSYPGPKGDRQRGIGSGQVKAYNAITGE  496

Query  486  MEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQ  545
              WE  EKF++WGGT+ATAG LVFYGTLDGFIKARD   G+L W+F+LPSG IGHP+TY 
Sbjct  497  FXWEKMEKFSIWGGTMATAGGLVFYGTLDGFIKARDADNGDLLWKFKLPSGAIGHPMTYT  556

Query  546  HNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            H+G QY+AI  GVGGWP VGLVFDL DP+AGLGAVGAF+ELA  TQMGG + VF+L
Sbjct  557  HDGIQYVAINYGVGGWPAVGLVFDLNDPSAGLGAVGAFKELARNTQMGGGLMVFAL  612


&gt;<input name="getSeqGi" value="114793655" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for 2D0V_A" href="http://www.ncbi.nlm.nih.gov/protein/114793655?report=genbank&amp;log$=protalign&amp;blast_rank=38&amp;RID=CJ3JAY4J013">pdb|2D0V|A</a><a name="114793655"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=114793655&amp;hit=114793655&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=38"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2D0V_A" border="0" height="16" width="16"></a> Chain A, Crystal Structure Of Methanol Dehydrogenase From Hyphomicrobium 
Denitrificans
 <a title="Show report for 2D0V_D" href="http://www.ncbi.nlm.nih.gov/protein/114793657?report=genbank&amp;log$=protalign&amp;blast_rank=38&amp;RID=CJ3JAY4J013">pdb|2D0V|D</a><a name="114793657"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=114793655&amp;hit=114793657&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=38"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2D0V_D" border="0" height="16" width="16"></a> Chain D, Crystal Structure Of Methanol Dehydrogenase From Hyphomicrobium 
Denitrificans
 <a title="Show report for 2D0V_I" href="http://www.ncbi.nlm.nih.gov/protein/114793659?report=genbank&amp;log$=protalign&amp;blast_rank=38&amp;RID=CJ3JAY4J013">pdb|2D0V|I</a><a name="114793659"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=114793655&amp;hit=114793659&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=38"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2D0V_I" border="0" height="16" width="16"></a> Chain I, Crystal Structure Of Methanol Dehydrogenase From Hyphomicrobium 
Denitrificans
 <a title="Show report for BAE16958" href="http://www.ncbi.nlm.nih.gov/protein/71795604?report=genbank&amp;log$=protalign&amp;blast_rank=38&amp;RID=CJ3JAY4J013">dbj|BAE16958.1|</a><a name="71795604"></a>  methanol dehydrogenase large subunit [Hyphomicrobium denitrificans]
Length=597

 Score =  853 bits (2204),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 407/580 (70%), Positives = 477/580 (82%), Gaps = 7/580 (1%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N +L  LS  + NWVM  K+Y + ++S  T+IN  NVK LK AW+ STG LHGHEGAPLV
Sbjct  1    NDKLIELSNSNENWVMPGKNYDSNNYSTSTQINVDNVKQLKHAWSFSTGELHGHEGAPLV  60

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            +  +MY+H+ FPN  +A+DLND   +LWQ+ PKQ+PAAR+VACCD+VNRGLAY P  +  
Sbjct  61   IGDVMYVHSSFPNKTFALDLNDPGHILWQHSPKQDPAARSVACCDLVNRGLAYWPGDDKT  120

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
            P+ I   QLDGH+VALNAKTGEE WK+EN DI +G TLT AP+VV D  +VGS+GAELGV
Sbjct  121  PSLIIKTQLDGHLVALNAKTGEEFWKVENGDIKVGQTLTQAPYVVHDLAIVGSSGAELGV  180

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            RG+VTAYN++ G+Q WR YATGPD ++ L  DFN  NPHYGQ GLG +TWEGDAWKIGGG
Sbjct  181  RGHVTAYNVRTGEQAWRYYATGPDAEIGLADDFNSANPHYGQKGLGTATWEGDAWKIGGG  240

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
            TNWGWYAYDP  ++IYYGSGNPAPWNETMRPGDNKWTMTI  RDADTG+ KFGYQKTPHD
Sbjct  241  TNWGWYAYDPAANLIYYGSGNPAPWNETMRPGDNKWTMTITARDADTGKMKFGYQKTPHD  300

Query  329  EWDYAGVNYMGLSEQ-EVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            EWD+AGVN + LSEQ +  GK   LLTHPDRNG+VYTL+RE G L++A K+DDTVN  K 
Sbjct  301  EWDFAGVNVIMLSEQTDKTGKKRKLLTHPDRNGIVYTLDRENGDLISADKLDDTVNVFKT  360

Query  388  VDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEP  447
            VDLKTGLP+RDPEY TRMDH    ICPSAMGYHNQG +SYDP K+LFFMG+NHICMDWEP
Sbjct  361  VDLKTGLPVRDPEYGTRMDHKGTDICPSAMGYHNQGHDSYDPQKQLFFMGINHICMDWEP  420

Query  448  FMLPYRAGQFFVGATLNMYPGPKG------MLGQVKAMNAVTGKMEWEVPEKFAVWGGTL  501
            FMLPYRAGQFFVGATL MYPGPKG       LGQ+KA NA+T + +W+  E+F+VWGGTL
Sbjct  421  FMLPYRAGQFFVGATLWMYPGPKGDRQNYLGLGQIKAYNAITNEYKWQHMERFSVWGGTL  480

Query  502  ATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGW  561
            ATAG+LVFYGTLDGF+KAR++ TGEL W+ +LPSGVIG+P+TY+H G QYIA+ SGVGGW
Sbjct  481  ATAGNLVFYGTLDGFLKARNSDTGELVWKHKLPSGVIGYPMTYEHKGVQYIAVMSGVGGW  540

Query  562  PGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            PGVGLVFDL+DPTAGLGAVGAF+ L +YTQMGGS+ VFSL
Sbjct  541  PGVGLVFDLQDPTAGLGAVGAFKNLQNYTQMGGSLEVFSL  580


&gt;<input name="getSeqGi" value="253998446" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_003050509" href="http://www.ncbi.nlm.nih.gov/protein/253998446?report=genbank&amp;log$=protalign&amp;blast_rank=39&amp;RID=CJ3JAY4J013">ref|YP_003050509.1|</a><a name="253998446"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=253998446[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=39"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003050509.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Methylovorus glucosetrophus SIP3-4]
 <a title="Show report for YP_004039179" href="http://www.ncbi.nlm.nih.gov/protein/313200521?report=genbank&amp;log$=protalign&amp;blast_rank=39&amp;RID=CJ3JAY4J013">ref|YP_004039179.1|</a><a name="313200521"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=313200521[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=39"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004039179.1" border="0" height="16" width="16"></a> pqq-dependent dehydrogenase [Methylovorus sp. MP688]
 <a title="Show report for ACT49982" href="http://www.ncbi.nlm.nih.gov/protein/253985125?report=genbank&amp;log$=protalign&amp;blast_rank=39&amp;RID=CJ3JAY4J013">gb|ACT49982.1|</a><a name="253985125"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=253985125[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=39"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACT49982.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylovorus 
glucosetrophus SIP3-4]
 <a title="Show report for ADQ83943" href="http://www.ncbi.nlm.nih.gov/protein/312439837?report=genbank&amp;log$=protalign&amp;blast_rank=39&amp;RID=CJ3JAY4J013">gb|ADQ83943.1|</a><a name="312439837"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=312439837[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=39"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADQ83943.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylovorus 
sp. MP688]
Length=598

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=8172875&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=39">GENE ID: 8172875 Msip34_0734</a> | PQQ-dependent dehydrogenase
[Methylovorus sp. SIP3-4]

 Score =  843 bits (2179),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 403/605 (67%), Positives = 485/605 (80%), Gaps = 11/605 (2%)

Query  1    MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI  60
            M+    A+G   + LA++A+L + +  A+S L+ L  +  NW MQT DY+  H+SRL++I
Sbjct  1    MKARITATGFAVAGLALSAMLPSVAAAADS-LEALGANPNNWTMQTGDYTGQHYSRLSQI  59

Query  61   NSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKP  120
             + NVKNLK AW+ STG LHGHEGAPLV+  +MYI+TPFPNN +A++L +  K++WQ+KP
Sbjct  60   TTGNVKNLKAAWSFSTGLLHGHEGAPLVIGDMMYINTPFPNNTFALNLAEPEKIVWQHKP  119

Query  121  KQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDI  180
            KQ+ + +AVACCD+VNRGLAY         +IF  QLDGH+VAL+AKTG+E+WKMEN D 
Sbjct  120  KQDASVKAVACCDIVNRGLAY------DDGRIFKTQLDGHLVALDAKTGKELWKMENCDP  173

Query  181  AMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKD  240
            A+GST+T APF VK KVLVG +GAELGVRGYVTAY+ K G+  WR++ATGPD +L L KD
Sbjct  174  AVGSTITQAPFAVKGKVLVGCSGAELGVRGYVTAYDQKTGELVWRSFATGPDNELNLAKD  233

Query  241  FNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPG  300
            FNKDNPHYGQ GLG  TWEG+AWKIGGGTNWGWYAYDPKL++ YYGSGNPAPWNETMRPG
Sbjct  234  FNKDNPHYGQMGLGTKTWEGEAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG  293

Query  301  DNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNG  360
            DNKWTMTIW RD DTG AK+GYQKTPHDEWD+AGVN M L++Q V GK  PLLTH DRNG
Sbjct  294  DNKWTMTIWARDVDTGAAKWGYQKTPHDEWDFAGVNQMILTDQPVGGKSQPLLTHVDRNG  353

Query  361  LVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYH  420
            ++YTLNR+TG++V A K+D  VN  KKVDLKTGLP+RDPE+STRMDH    ICPSAMG+H
Sbjct  354  IMYTLNRQTGSIVQAAKVDPAVNVFKKVDLKTGLPLRDPEFSTRMDHKGTNICPSAMGFH  413

Query  421  NQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG----MLGQV  476
            NQG+++YDPD + F+ G+NHICMDWEPFMLPYRAGQFFVGATL MYPGP G     +GQV
Sbjct  414  NQGLDAYDPDSRTFYFGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQV  473

Query  477  KAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSG  536
            +AM+ VTG+++W   EKF+VWGGTLAT G LVFY TLDG IKA D   G+  W+F++PSG
Sbjct  474  RAMDGVTGEVKWTKWEKFSVWGGTLATKGGLVFYNTLDGNIKALDKTNGKEIWKFKMPSG  533

Query  537  VIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSV  596
             IG P++Y + GKQYIA   GVGGWPGVGLVFDL DP+AGLGAVGAF+EL  YTQMGG V
Sbjct  534  AIGAPMSYAYKGKQYIATNYGVGGWPGVGLVFDLTDPSAGLGAVGAFKELQSYTQMGGGV  593

Query  597  FVFSL  601
             VF L
Sbjct  594  MVFGL  598


&gt;<input name="getSeqGi" value="177826804" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ACB73291" href="http://www.ncbi.nlm.nih.gov/protein/177826804?report=genbank&amp;log$=protalign&amp;blast_rank=40&amp;RID=CJ3JAY4J013">gb|ACB73291.1|</a><a name="177826804"></a>  PQQ-linked methanol dehydrogenase large subunit [Burkholderiales 
bacterium RZ18-153]
Length=537

 Score =  837 bits (2163),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 404/543 (74%), Positives = 452/543 (83%), Gaps = 8/543 (1%)

Query  57   LTEINSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLW  116
            LT+IN  NVKNLK AWT STG LHGHEG PLVV+GIMYIHTPFPN  YA+DL++  K+LW
Sbjct  1    LTQINRSNVKNLKAAWTFSTGVLHGHEGGPLVVNGIMYIHTPFPNITYAIDLDNPNKILW  60

Query  117  QYKPKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKME  176
            ++KPKQ+ + RAVACCDVVNRGLAY      G  KIF  QLDGHIVAL+AKTG+E+WKME
Sbjct  61   EHKPKQDASVRAVACCDVVNRGLAY------GDGKIFKTQLDGHIVALDAKTGKELWKME  114

Query  177  NSDIAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLL  236
            NSD  +GSTLT AP VV+D V+VGS+GAELGVRGYVTAY IKDGKQ WRAYATGPDED+L
Sbjct  115  NSDPKVGSTLTQAPMVVEDMVIVGSSGAELGVRGYVTAYRIKDGKQVWRAYATGPDEDIL  174

Query  237  LDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNET  296
            L  DFN  NPHYGQ GLG STWEGDAWKIGGGTNWGWYAYDP+L ++YYGSGNPAPWNET
Sbjct  175  LADDFNMANPHYGQKGLGTSTWEGDAWKIGGGTNWGWYAYDPELKLMYYGSGNPAPWNET  234

Query  297  MRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHP  356
            MRPGDNKWTM IWGRD  TG+AKF +QKTPHDEWDYAGVN++GLS+Q VDGK   LLTHP
Sbjct  235  MRPGDNKWTMAIWGRDVKTGKAKFAFQKTPHDEWDYAGVNWIGLSDQVVDGKKQKLLTHP  294

Query  357  DRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSA  416
            DRNG+VYTLNRE G LV A KID +VN  K  D+K G+PIRDPEYSTRMDH AKGICPSA
Sbjct  295  DRNGIVYTLNRENGNLVRADKIDPSVNVFKGYDMKKGVPIRDPEYSTRMDHLAKGICPSA  354

Query  417  MGYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMY--PGPKGMLG  474
            MGYHNQG +S D  ++L  +G N ICMDWEPFMLPYRAGQFFVGATLNMY  PG  G +G
Sbjct  355  MGYHNQGHDSIDKKRELVMLGTNMICMDWEPFMLPYRAGQFFVGATLNMYATPGNNGNVG  414

Query  475  QVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLP  534
            QVKA +  T K +W   EKF+VWGGT +TAGDLVFYGTLDG IKA D   G+  W+F+LP
Sbjct  415  QVKAYDVKTSKFKWVKDEKFSVWGGTTSTAGDLVFYGTLDGMIKAVDADNGKTLWEFKLP  474

Query  535  SGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGG  594
            SGVIGHP+TY+H GKQY+AIY GVGGWPGVGLVFDL DPTAGLGAVGAF+EL  YT+MGG
Sbjct  475  SGVIGHPVTYEHKGKQYVAIYYGVGGWPGVGLVFDLTDPTAGLGAVGAFKELQQYTKMGG  534

Query  595  SVF  597
             + 
Sbjct  535  GMM  537


&gt;<input name="getSeqGi" value="7258334" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for AAD56237" href="http://www.ncbi.nlm.nih.gov/protein/7258334?report=genbank&amp;log$=protalign&amp;blast_rank=41&amp;RID=CJ3JAY4J013">gb|AAD56237.2|AF184915_1</a><a name="7258334"></a>  methanol dehydrogenase large subunit [Methylovorus sp. SS1]
Length=599

 Score =  822 bits (2123),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/606 (66%), Positives = 479/606 (79%), Gaps = 12/606 (2%)

Query  1    MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI  60
            M+    A+G   + LA++A+L + +  A+S L+ L  +  NW MQT DY+  H+SRL++I
Sbjct  1    MKARITATGFAVAGLALSAMLPSVAAAADS-LEALGANPNNWTMQTGDYTGQHYSRLSQI  59

Query  61   NSHNVKNLKVAW-TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYK  119
             + NVKNL+      STG L GHEGAPLV+  +MYI+TPFPNN +A++L +  K++WQ+K
Sbjct  60   TTGNVKNLESGLGHFSTGLLTGHEGAPLVIGDMMYINTPFPNNTFALNLAEPEKIVWQHK  119

Query  120  PKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSD  179
            PKQ+ + +AVACCD+VNRGLAY          IF  QLDGH+VA +AKTG+E+WKMEN D
Sbjct  120  PKQDASVKAVACCDIVNRGLAY------DDGHIFKTQLDGHLVASDAKTGKELWKMENCD  173

Query  180  IAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDK  239
             A+GST+T APF VK KVLVG +GAELGVRGYVTAY+ K G+  WR++ATGPD +L L K
Sbjct  174  PAVGSTITQAPFAVKGKVLVGCSGAELGVRGYVTAYDQKTGELVWRSFATGPDNELNLAK  233

Query  240  DFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRP  299
            DFNKDNPHYGQ GLG  TWEG+ WKIGGGTNWGWYAYDPKL++ YYGSGNPAPWNETMRP
Sbjct  234  DFNKDNPHYGQMGLGTKTWEGEGWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRP  293

Query  300  GDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRN  359
            GDNKWTMTIW RD DTG AK+GYQKTPHDEWD+AGVN M L++Q V+GK  PLLTH DRN
Sbjct  294  GDNKWTMTIWARDVDTGAAKWGYQKTPHDEWDFAGVNQMILTDQAVNGKTQPLLTHVDRN  353

Query  360  GLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGY  419
            G++YTLNR+TG++V A K+D  VN  KKVDLKTGLP+RDPE+STRMDH    ICPSAMG+
Sbjct  354  GIMYTLNRQTGSIVQAAKVDPAVNVFKKVDLKTGLPVRDPEFSTRMDHKGTNICPSAMGF  413

Query  420  HNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG----MLGQ  475
            HNQG+++YDPD + F+ G+NHICMDWEPFMLPYRAGQFFVGATL MYPGP G     +GQ
Sbjct  414  HNQGLDAYDPDSRTFYFGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQ  473

Query  476  VKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPS  535
            V AM+ VTG+++W   EKF+VWGGTLAT G LVFY TLDG IKA D   G+  W+F++PS
Sbjct  474  VLAMDGVTGEVKWTKWEKFSVWGGTLATKGGLVFYNTLDGNIKALDKTNGKEIWKFKMPS  533

Query  536  GVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGS  595
            G IG P++Y + GKQYIA   GVGGWPGVGLVFDL DP+AGLGAVGAF+EL +YTQMGG 
Sbjct  534  GAIGAPMSYAYKGKQYIATNYGVGGWPGVGLVFDLTDPSAGLGAVGAFKELQNYTQMGGG  593

Query  596  VFVFSL  601
            V VF L
Sbjct  594  VMVFGL  599


&gt;<input name="getSeqGi" value="20271259" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for AAM18567" href="http://www.ncbi.nlm.nih.gov/protein/20271259?report=genbank&amp;log$=protalign&amp;blast_rank=42&amp;RID=CJ3JAY4J013">gb|AAM18567.1|AF494424_1</a><a name="20271259"></a>  large subunit of methanol dehydrogenase [Methylobacillus sp. 
SK-5]
Length=599

 Score =  818 bits (2114),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 392/598 (66%), Positives = 473/598 (79%), Gaps = 13/598 (2%)

Query  8    SGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKN  67
            S    S+L +A +  AQ   AN +L  L+K+  NW +QT +Y+  H S L++IN  NVKN
Sbjct  11   SAAVSSLLVLATMQGAQ---ANQDLQNLTKNADNWALQTGNYTGQHNSTLSQINKGNVKN  67

Query  68   LKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAAR  127
            LK AW+ STG LHGHEGAPLV+  +MYIH+ FPNN +AV+LND   + WQ+KPKQ  + +
Sbjct  68   LKAAWSFSTGVLHGHEGAPLVIGDMMYIHSAFPNNTFAVNLNDPGVIAWQHKPKQIASVK  127

Query  128  AVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLT  187
            AVACCD+VNRGLAY      G  KI   QLDG +VAL+AK+G+ +W++E  D  +G+TLT
Sbjct  128  AVACCDIVNRGLAY------GDGKIVKTQLDGKLVALDAKSGKVVWEIEVCDPKVGATLT  181

Query  188  GAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPH  247
             APF+VK+ VLVG +GAELGVRG V ++N+K G+ +WRA+ATGPDE++ L K+FN DNPH
Sbjct  182  QAPFIVKNTVLVGCSGAELGVRGAVNSFNLKTGELQWRAFATGPDEEVRLAKNFNSDNPH  241

Query  248  YGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
            YGQFGLGL TWEGDAWKIGGGTNWGWYAYDPKL++ YYGSGNPAPWNETMRPGDNKWTMT
Sbjct  242  YGQFGLGLKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  301

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            IW RD DTG AK+GYQKTPHDEWD+AGVN M LS+ +VDGK+TPLLTH DRNG++YTLNR
Sbjct  302  IWARDLDTGEAKWGYQKTPHDEWDFAGVNQMILSDHKVDGKVTPLLTHIDRNGIMYTLNR  361

Query  368  ETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESY  427
            + G LV A K+D  VN  KKVDLKTG P+RDPE+STRMDH +  +CPSAMG+HNQG+++ 
Sbjct  362  DNGNLVQAAKVDPAVNVFKKVDLKTGTPVRDPEFSTRMDHKSTNVCPSAMGFHNQGLDAL  421

Query  428  DPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG----MLGQVKAMNAVT  483
            D D+ + + G+NHICMDWEPFMLPYRAGQFFVGATL MYPGP G     +GQV+AM+ VT
Sbjct  422  DLDEPIVYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPSGPTKKEMGQVRAMDIVT  481

Query  484  GKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPIT  543
            GK +W   EKFAVWGGTLAT G LV Y TLDG+IKA D   G+  W+F++PSG IG P+T
Sbjct  482  GKYKWTKWEKFAVWGGTLATKGGLVAYNTLDGYIKALDKDNGKELWKFKMPSGGIGAPMT  541

Query  544  YQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            YQ  GKQYI    GVGGWPGVGLVFDL DP+AGLGAVGAF+EL ++TQMGG + VFSL
Sbjct  542  YQFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFKELQNHTQMGGGLMVFSL  599


&gt;<input name="getSeqGi" value="91776396" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_546152" href="http://www.ncbi.nlm.nih.gov/protein/91776396?report=genbank&amp;log$=protalign&amp;blast_rank=43&amp;RID=CJ3JAY4J013">ref|YP_546152.1|</a><a name="91776396"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91776396[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=43"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_546152.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Methylobacillus flagellatus KT]
 <a title="Show report for ABE50311" href="http://www.ncbi.nlm.nih.gov/protein/91710383?report=genbank&amp;log$=protalign&amp;blast_rank=43&amp;RID=CJ3JAY4J013">gb|ABE50311.1|</a><a name="91710383"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91710383[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=43"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABE50311.1" border="0" height="16" width="16"></a> MxaF, large subunit of methanol dehydrogenase [Methylobacillus 
flagellatus KT]
Length=599

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=3999840&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=43">GENE ID: 3999840 Mfla_2044</a> | Pyrrolo-quinoline quinone
[Methylobacillus flagellatus KT] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  818 bits (2112),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/598 (65%), Positives = 471/598 (79%), Gaps = 13/598 (2%)

Query  8    SGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKN  67
            S    S+L +A V  AQ   AN E+  L K+  NW +QT +Y+  H S L++IN  NVKN
Sbjct  11   SAAVSSLLVLATVQGAQ---ANQEVLNLQKNADNWALQTGNYTGQHNSTLSQINKSNVKN  67

Query  68   LKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAAR  127
            LK AW+ STG LHGHEGAPLV+  +MY+H+ FPNN +A++LND   + WQ+KPKQ  + +
Sbjct  68   LKAAWSFSTGVLHGHEGAPLVIGDMMYVHSAFPNNTFAINLNDPGVIAWQHKPKQIASVK  127

Query  128  AVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLT  187
            AVACCD+VNRGLAY      G  KI   QLDG +VAL+AK+G+ +W++E  D  +G+TLT
Sbjct  128  AVACCDIVNRGLAY------GDGKIVKTQLDGRLVALDAKSGKIVWEIEVCDPKVGATLT  181

Query  188  GAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPH  247
             APFV K+ VLVG +GAELGVRG V ++N+K G+ +WRA+ATGPDE++ L K+FN DNPH
Sbjct  182  QAPFVAKNSVLVGCSGAELGVRGAVNSFNLKTGELQWRAFATGPDEEVRLAKNFNSDNPH  241

Query  248  YGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
            YGQFGLGL TWEGDAWKIGGGTNWGWYAYDPKL++ YYGSGNPAPWNETMRPGDNKWTMT
Sbjct  242  YGQFGLGLKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  301

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            IW RD DTG AK+GYQKTPHDEWD+AGVN M LS+ +VDGK+TPLLTH DRNG++YTLNR
Sbjct  302  IWARDLDTGEAKWGYQKTPHDEWDFAGVNQMILSDHKVDGKVTPLLTHIDRNGIMYTLNR  361

Query  368  ETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESY  427
            + G L+ A K+D  VN  KKVDLKTG P+RDPE+STRMDH +  +CPSAMG+HNQG+++ 
Sbjct  362  DNGNLIQAAKVDPAVNVFKKVDLKTGTPVRDPEFSTRMDHKSTNVCPSAMGFHNQGLDAL  421

Query  428  DPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG----MLGQVKAMNAVT  483
            D D+ + + G+NHICMDWEPFMLPYRAGQFFVGATL MYPGP G     +GQV+AM+ VT
Sbjct  422  DLDEPIVYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPSGPTKKEMGQVRAMDIVT  481

Query  484  GKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPIT  543
            GK +W   EKFAVWGGTLAT G LV Y TLDG+IKA D   G+  W+F++PSG IG P+T
Sbjct  482  GKYKWTKWEKFAVWGGTLATKGGLVVYNTLDGYIKALDKDNGKDLWKFKMPSGGIGAPMT  541

Query  544  YQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            YQ  GKQYI    GVGGWPGVGLVFDL DP+AGLGAVGAF+EL ++TQMGG + VFSL
Sbjct  542  YQFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFKELQNHTQMGGGLMVFSL  599


&gt;<input name="getSeqGi" value="25014056" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for P38539" href="http://www.ncbi.nlm.nih.gov/protein/25014056?report=genbank&amp;log$=protalign&amp;blast_rank=44&amp;RID=CJ3JAY4J013">sp|P38539.2|DHM1_METME</a><a name="25014056"></a>  RecName: Full=Methanol dehydrogenase [cytochrome c] subunit 1; 
AltName: Full=MDH large subunit alpha; AltName: Full=MEDH
 <a title="Show report for 1G72_A" href="http://www.ncbi.nlm.nih.gov/protein/13096267?report=genbank&amp;log$=protalign&amp;blast_rank=44&amp;RID=CJ3JAY4J013">pdb|1G72|A</a><a name="13096267"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=25014056&amp;hit=13096267&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=44"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1G72_A" border="0" height="16" width="16"></a> Chain A, Catalytic Mechanism Of Quinoprotein Methanol Dehydrogenase: 
A Theoretical And X-Ray Crystallographic Investigation
 <a title="Show report for 1G72_C" href="http://www.ncbi.nlm.nih.gov/protein/13096269?report=genbank&amp;log$=protalign&amp;blast_rank=44&amp;RID=CJ3JAY4J013">pdb|1G72|C</a><a name="13096269"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=25014056&amp;hit=13096269&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=44"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 1G72_C" border="0" height="16" width="16"></a> Chain C, Catalytic Mechanism Of Quinoprotein Methanol Dehydrogenase: 
A Theoretical And X-Ray Crystallographic Investigation
 <a title="Show report for AAA83765" href="http://www.ncbi.nlm.nih.gov/protein/1127820?report=genbank&amp;log$=protalign&amp;blast_rank=44&amp;RID=CJ3JAY4J013">gb|AAA83765.1|</a><a name="1127820"></a>  methanol dehydrogenase heavy subunit [Methylophilus methylotrophus]
Length=573

 Score =  780 bits (2014),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 370/578 (64%), Positives = 452/578 (78%), Gaps = 10/578 (2%)

Query  28   ANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPL  87
            A+++LD+       W + T  Y + H S L +IN  NVKN+K AW+ STG L+GHEGAPL
Sbjct  2    ADADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPL  61

Query  88   VVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEH  147
            V+  +MY+H+ FPNN YA++LND  K++WQ+KPKQ+ + +AV CCDVV+RGLAY      
Sbjct  62   VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY------  115

Query  148  GPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELG  207
            G  +I   Q +GH++AL+AKTG+  W++E  D  +GSTLT APFV KD VL+G +GAELG
Sbjct  116  GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELG  175

Query  208  VRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGG  267
            VRG V A+++K G+ +WRA+ATG D+ + L KDFN  NPHYGQFGLG  TWEGDAWKIGG
Sbjct  176  VRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGG  235

Query  268  GTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPH  327
            GTNWGWYAYDPKL++ YYGSGNPAPWNETMRPGDNKWTMTIWGRD DTG AK+GYQKTPH
Sbjct  236  GTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH  295

Query  328  DEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            DEWD+AGVN M L++Q V+GK+TPLL+H DRNG++YTLNRE G L+ A K+D  VN  KK
Sbjct  296  DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  355

Query  388  VDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEP  447
            VDLKTG P+RDPE++TRMDH    ICPSAMG+HNQG++SYDP+ +  + G+NHICMDWEP
Sbjct  356  VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEP  415

Query  448  FMLPYRAGQFFVGATLNMYPGPKG----MLGQVKAMNAVTGKMEWEVPEKFAVWGGTLAT  503
            FMLPYRAGQFFVGATL MYPGP G     +GQ++A +  TGK +W   EKFA WGGTL T
Sbjct  416  FMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT  475

Query  504  AGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPG  563
             G LV+Y TLDG++KA D + G+  W F++PSG IG P+TY   GKQYI    GVGGWPG
Sbjct  476  KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPG  535

Query  564  VGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            VGLVFDL DP+AGLGAVGAFREL ++TQMGG + VFSL
Sbjct  536  VGLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL  573


&gt;<input name="getSeqGi" value="1942860" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for 4AAH_A" href="http://www.ncbi.nlm.nih.gov/protein/1942860?report=genbank&amp;log$=protalign&amp;blast_rank=45&amp;RID=CJ3JAY4J013">pdb|4AAH|A</a><a name="1942860"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=1942860&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 4AAH_A" border="0" height="16" width="16"></a> Chain A, Methanol Dehydrogenase From Methylophilus W3a1
 <a title="Show report for 4AAH_C" href="http://www.ncbi.nlm.nih.gov/protein/1942862?report=genbank&amp;log$=protalign&amp;blast_rank=45&amp;RID=CJ3JAY4J013">pdb|4AAH|C</a><a name="1942862"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=1942862&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 4AAH_C" border="0" height="16" width="16"></a> Chain C, Methanol Dehydrogenase From Methylophilus W3a1
 <a title="Show report for 2AD6_A" href="http://www.ncbi.nlm.nih.gov/protein/112489894?report=genbank&amp;log$=protalign&amp;blast_rank=45&amp;RID=CJ3JAY4J013">pdb|2AD6|A</a><a name="112489894"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=112489894&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2AD6_A" border="0" height="16" width="16"></a> Chain A, Crystal Structure Of Methanol Dehydrogenase From M. 
W3a1 (Form C)
 <a title="Show report for 2AD6_C" href="http://www.ncbi.nlm.nih.gov/protein/112489896?report=genbank&amp;log$=protalign&amp;blast_rank=45&amp;RID=CJ3JAY4J013">pdb|2AD6|C</a><a name="112489896"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=112489896&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2AD6_C" border="0" height="16" width="16"></a> Chain C, Crystal Structure Of Methanol Dehydrogenase From M. 
W3a1 (Form C)
 <a title="Show report for 2AD7_A" href="http://www.ncbi.nlm.nih.gov/protein/112489900?report=genbank&amp;log$=protalign&amp;blast_rank=45&amp;RID=CJ3JAY4J013">pdb|2AD7|A</a><a name="112489900"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=112489900&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2AD7_A" border="0" height="16" width="16"></a> Chain A, Crystal Structure Of Methanol Dehydrogenase From M. 
W3a1 (Form C) In The Presence Of Methanol
 <a title="Show report for 2AD7_C" href="http://www.ncbi.nlm.nih.gov/protein/112489902?report=genbank&amp;log$=protalign&amp;blast_rank=45&amp;RID=CJ3JAY4J013">pdb|2AD7|C</a><a name="112489902"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=112489902&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2AD7_C" border="0" height="16" width="16"></a> Chain C, Crystal Structure Of Methanol Dehydrogenase From M. 
W3a1 (Form C) In The Presence Of Methanol
 <a title="Show report for 2AD8_A" href="http://www.ncbi.nlm.nih.gov/protein/112489906?report=genbank&amp;log$=protalign&amp;blast_rank=45&amp;RID=CJ3JAY4J013">pdb|2AD8|A</a><a name="112489906"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=112489906&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2AD8_A" border="0" height="16" width="16"></a> Chain A, Crystal Structure Of Methanol Dehydrogenase From M. 
W3a1 (Form C) In The Presence Of Ethanol
 <a title="Show report for 2AD8_C" href="http://www.ncbi.nlm.nih.gov/protein/112489908?report=genbank&amp;log$=protalign&amp;blast_rank=45&amp;RID=CJ3JAY4J013">pdb|2AD8|C</a><a name="112489908"></a> <a href="http://www.ncbi.nlm.nih.gov/Structure/cblast/cblast.cgi?blast_RID=CJ3JAY4J013&amp;blast_rep_gi=1942860&amp;hit=112489908&amp;query_gi=53758644&amp;blast_view=onepair&amp;hsp=0&amp;taxname=none&amp;client=blast&amp;log$=structurealign&amp;blast_rank=45"><img src="blastp%20of%20m.caps_files/str_link.gif" alt="Structure related to 2AD8_C" border="0" height="16" width="16"></a> Chain C, Crystal Structure Of Methanol Dehydrogenase From M. 
W3a1 (Form C) In The Presence Of Ethanol
Length=571

 Score =  778 bits (2010),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 369/577 (64%), Positives = 451/577 (78%), Gaps = 10/577 (2%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            +++LD+       W + T  Y + H S L +IN  NVKN+K AW+ STG L+GHEGAPLV
Sbjct  1    DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLV  60

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            +  +MY+H+ FPNN YA++LND  K++WQ+KPKQ+ + +AV CCDVV+RGLAY      G
Sbjct  61   IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY------G  114

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
              +I   Q +GH++AL+AKTG+  W++E  D  +GSTLT APFV KD VL+G +GAELGV
Sbjct  115  AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGV  174

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            RG V A+++K G+ +WRA+ATG D+ + L KDFN  NPHYGQFGLG  TWEGDAWKIGGG
Sbjct  175  RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGG  234

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
            TNWGWYAYDPKL++ YYGSGNPAPWNETMRPGDNKWTMTIWGRD DTG AK+GYQKTPHD
Sbjct  235  TNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD  294

Query  329  EWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKV  388
            EWD+AGVN M L++Q V+GK+TPLL+H DRNG++YTLNRE G L+ A K+D  VN  KKV
Sbjct  295  EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354

Query  389  DLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEPF  448
            DLKTG P+RDPE++TRMDH    ICPSAMG+HNQG++SYDP+ +  + G+NHICMDWEPF
Sbjct  355  DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414

Query  449  MLPYRAGQFFVGATLNMYPGPKG----MLGQVKAMNAVTGKMEWEVPEKFAVWGGTLATA  504
            MLPYRAGQFFVGATL MYPGP G     +GQ++A +  TGK +W   EKFA WGGTL T 
Sbjct  415  MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTK  474

Query  505  GDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGV  564
            G LV+Y TLDG++KA D + G+  W F++PSG IG P+TY   GKQYI    GVGGWPGV
Sbjct  475  GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGV  534

Query  565  GLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GLVFDL DP+AGLGAVGAFREL ++TQMGG + VFSL
Sbjct  535  GLVFDLTDPSAGLGAVGAFRELQNHTQMGGGLMVFSL  571


&gt;<input name="getSeqGi" value="186471236" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001862554" href="http://www.ncbi.nlm.nih.gov/protein/186471236?report=genbank&amp;log$=protalign&amp;blast_rank=46&amp;RID=CJ3JAY4J013">ref|YP_001862554.1|</a><a name="186471236"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=186471236[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=46"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001862554.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Burkholderia 
phymatum STM815]
 <a title="Show report for ACC75508" href="http://www.ncbi.nlm.nih.gov/protein/184197545?report=genbank&amp;log$=protalign&amp;blast_rank=46&amp;RID=CJ3JAY4J013">gb|ACC75508.1|</a><a name="184197545"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=184197545[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=46"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACC75508.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
phymatum STM815]
Length=606

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=6248017&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=46">GENE ID: 6248017 Bphy_6478</a> | methanol/ethanol family PQQ-dependent
dehydrogenase [Burkholderia phymatum STM815]

 Score =  647 bits (1669),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 317/599 (53%), Positives = 415/599 (69%), Gaps = 16/599 (3%)

Query  12   GSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVA  71
            G  + +A  L +   +A+ +LD L K+  NW  Q  DY+   +S L +IN  NV  L+VA
Sbjct  9    GLAVLVATALNSFLAYADPQLDSLIKNPSNWAAQAGDYANHRYSPLKQINESNVGKLQVA  68

Query  72   WTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVAC  131
            WT+STG L GHEG+PLV+   MYIH+PFPN V A++L D +  +WQY+PKQ+ +  +V C
Sbjct  69   WTMSTGVLRGHEGSPLVIGDTMYIHSPFPNKVIAINLKD-QTFIWQYEPKQDASVISVMC  127

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD VNRGLAY      G  KIFL Q D  +VALNAKTGE +W  +N D   G T T AP 
Sbjct  128  CDTVNRGLAY------GDGKIFLQQADTKLVALNAKTGEVVWTAQNGDPKAGETNTNAPH  181

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            V  DKVL G +G E GVRG + AY+IK GK+ W+AY+TGPD ++LLD             
Sbjct  182  VFGDKVLTGISGGEFGVRGRLIAYDIKTGKEAWKAYSTGPDNEMLLDPQQTMTWADGKMQ  241

Query  252  GLG----LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
             +G    + +W+GD WK+GGGT WGWYA+DPKL+++YYG+GNP  WN T RPGDNKW+M+
Sbjct  242  PVGADSSIKSWKGDQWKLGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNKWSMS  301

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            I+ RD +TG+AK+ YQ TPHDEWDY GVN M L++  V+GK TP + H DRNG  YTLNR
Sbjct  302  IFARDLNTGKAKWVYQMTPHDEWDYDGVNEMILADIAVNGKKTPAIVHFDRNGFGYTLNR  361

Query  368  ETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            ETG L+ A K D  VNW   VDLK+GLPIR+  YST+    DHN KGICP+A+G  +Q  
Sbjct  362  ETGELLVAQKYDPAVNWADSVDLKSGLPIRNASYSTQKAGPDHNVKGICPAALGSKDQQP  421

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMNAV  482
             S+DP   LF +  NH+CMD+EPF + Y +GQ +VGATL+MYPGP  KG +G   A +A 
Sbjct  422  ASFDPGSNLFLVPTNHVCMDYEPFDVDYVSGQPYVGATLSMYPGPDEKGAMGNFIAWDAA  481

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             GK+ W  PE+F+VW G LATAG +VFYGTL+G+IKA   + G+  W+F+ PSG+IG+  
Sbjct  482  KGKIVWSKPERFSVWSGALATAGGIVFYGTLEGYIKAVRIKDGKELWKFKTPSGIIGNVF  541

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY++ GKQ++ +YSG+GGW G+G+   L+  T GLGAVG +RELA YT +GG++FVF++
Sbjct  542  TYEYQGKQFVGVYSGIGGWAGIGMAAGLQKSTEGLGAVGGYRELAKYTALGGTLFVFAV  600


&gt;<input name="getSeqGi" value="323528262" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_004230414" href="http://www.ncbi.nlm.nih.gov/protein/323528262?report=genbank&amp;log$=protalign&amp;blast_rank=47&amp;RID=CJ3JAY4J013">ref|YP_004230414.1|</a><a name="323528262"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=323528262[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=47"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004230414.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Burkholderia sp. CCGE1001]
 <a title="Show report for ADX57354" href="http://www.ncbi.nlm.nih.gov/protein/323385264?report=genbank&amp;log$=protalign&amp;blast_rank=47&amp;RID=CJ3JAY4J013">gb|ADX57354.1|</a><a name="323385264"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=323385264[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=47"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADX57354.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. CCGE1001]
Length=605

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=10225534&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=47">GENE ID: 10225534 BC1001_3943</a> | PQQ-dependent dehydrogenase
[Burkholderia sp. CCGE1001]

 Score =  645 bits (1664),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 317/599 (53%), Positives = 410/599 (68%), Gaps = 16/599 (3%)

Query  12   GSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVA  71
            G  +  +A  ++    A+S+LD L K   NW  Q  DY+   +S L +IN +NV  L+VA
Sbjct  9    GLAILASAAFSSIVAQADSQLDGLMKSPSNWAAQAGDYANHRYSPLKQINENNVGKLQVA  68

Query  72   WTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVAC  131
            WT+STG L GHEGAPLV+   MYIH+PFPN V AV+L D +  LWQY+PKQ+ +  +V C
Sbjct  69   WTMSTGVLRGHEGAPLVIGDTMYIHSPFPNKVIAVNLKD-QTFLWQYQPKQDDSVVSVMC  127

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD VNRGLAY      G  KIFL Q D  +VALNAKTG+ +W  +N +   G T T AP 
Sbjct  128  CDTVNRGLAY------GDGKIFLQQADTKLVALNAKTGDVVWTAQNGNPKAGETNTNAPH  181

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            V  DKVL G +G E GVRG + AY+IK GK  W AY+TGPD+D+L+D D           
Sbjct  182  VFGDKVLTGISGGEFGVRGRLIAYDIKTGKPVWTAYSTGPDKDMLMDPDKTMTYTDGKMV  241

Query  252  GLG----LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
             +G    L +W+GD WK+GGGT WGWYA+DPKL+++YYG+GNP  WN T RPGDNKW+M+
Sbjct  242  PVGADSSLKSWKGDQWKLGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNKWSMS  301

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            I+ RD +TG AK+ YQ TPHDEWDY GVN M LS+  +DGK  P + H DRNG  YTLNR
Sbjct  302  IFARDLNTGMAKWVYQMTPHDEWDYDGVNEMILSDLTIDGKKVPAIVHFDRNGFGYTLNR  361

Query  368  ETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            E+G L+ A K D  VNW   VDLKTG PIR+  YST+    DHN KGICP+A+G  +Q  
Sbjct  362  ESGQLLVAQKYDPAVNWADSVDLKTGKPIRNAAYSTQAAGSDHNVKGICPAALGSKDQQP  421

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMNAV  482
             ++DP+  LF +  NH+CMD+EPF + Y +GQ +VGATL+MYPGP     +G   A +A 
Sbjct  422  AAFDPNSSLFLVPTNHVCMDYEPFDVDYVSGQPYVGATLSMYPGPNENNAMGNFIAWDAA  481

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             GK+ W  PEKF+VW G LATAG + FYGTL+G++KA   + G+  W+F+ PSG+IG+  
Sbjct  482  KGKIVWSKPEKFSVWSGALATAGGIAFYGTLEGYLKAVRIKDGKELWRFKTPSGIIGNVF  541

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TYQ+ GKQY+ +YSG+GGW G+G+   L+  T GLGAVG +RELA YT +GG++FVF++
Sbjct  542  TYQYQGKQYVGVYSGIGGWAGIGMAAGLEKSTEGLGAVGGYRELAKYTALGGTLFVFAI  600


&gt;<input name="getSeqGi" value="85707427" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_01038508" href="http://www.ncbi.nlm.nih.gov/protein/85707427?report=genbank&amp;log$=protalign&amp;blast_rank=48&amp;RID=CJ3JAY4J013">ref|ZP_01038508.1|</a><a name="85707427"></a>  putative methanol dehydrogenase protein, large subunit [Roseovarius 
sp. 217]
 <a title="Show report for EAQ22963" href="http://www.ncbi.nlm.nih.gov/protein/85668083?report=genbank&amp;log$=protalign&amp;blast_rank=48&amp;RID=CJ3JAY4J013">gb|EAQ22963.1|</a><a name="85668083"></a>  putative methanol dehydrogenase protein, large subunit [Roseovarius 
sp. 217]
Length=600

 Score =  644 bits (1662),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 322/604 (53%), Positives = 411/604 (68%), Gaps = 24/604 (4%)

Query  13   SMLAMAAVLAAQS--THANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKV  70
            S+L  AA     S    ANS+L  L  D   W +QT DY+ T +S L +IN  NV  L+V
Sbjct  4    SLLMSAAFFVGASGMAAANSDLQALIDDPSQWAIQTGDYANTRYSELDQINKDNVGKLQV  63

Query  71   AWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVA  130
            AWT STG L GHEG+PLV+  +MY+HTPFPN VYA+DL+D  K++W+Y+PKQ+P    V 
Sbjct  64   AWTFSTGVLRGHEGSPLVIGDVMYVHTPFPNIVYALDLSDNGKIIWKYEPKQDPNVIPVM  123

Query  131  CCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAP  190
            CCD VNRG+AY         KIFL+Q D  IVAL+AKTGE +W   N D A+G T T   
Sbjct  124  CCDTVNRGVAYADG------KIFLHQADTTIVALDAKTGEVVWTAVNGDPAIGETNTATV  177

Query  191  FVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ  250
              VKDKV+VG +G E GVRG+ TAY++K G+Q WRAY+ GPD D L+D +   +  H G+
Sbjct  178  LPVKDKVIVGISGGEFGVRGHTTAYDMKTGEQVWRAYSMGPDSDTLMDPE---NTTHLGE  234

Query  251  ---FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
                  G +TWEGD WKIGGG+ WGWY+YD +LD+ YYG+GNP+ WN   RPGDN+W+MT
Sbjct  235  PVGADSGTNTWEGDQWKIGGGSTWGWYSYDAELDLFYYGTGNPSTWNPAQRPGDNRWSMT  294

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            I  R+ DTG AK+ YQ TPHDEWDY GVN M L++QEVDG++  LLTHPDRNGL YTL+R
Sbjct  295  IMARNPDTGMAKWLYQMTPHDEWDYDGVNEMILTDQEVDGQMRKLLTHPDRNGLSYTLDR  354

Query  368  ETGALVNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGY  419
            ETG L+ A K D  VNW   VD+       G P    EYST     D N+ GICP+A+G 
Sbjct  355  ETGELLVAEKYDPAVNWTTGVDMDPASETYGRPAVVAEYSTEQNGEDVNSTGICPAALGT  414

Query  420  HNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVK  477
             +Q   +Y P   LF++  NH+CMD+EPF + Y AGQ +VGATL MYP P   G +G   
Sbjct  415  KDQQPSAYSPKTGLFYIPTNHVCMDYEPFRVSYTAGQPYVGATLAMYPAPGSHGGMGNFI  474

Query  478  AMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGV  537
            A + + GK++W +PE+F+VW G LATAGD+VFYGTL+G++KA D  TG+  + F+ PSG+
Sbjct  475  AWDNIEGKIKWSIPEQFSVWSGALATAGDVVFYGTLEGYLKAIDAATGDELYSFKTPSGI  534

Query  538  IGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVF  597
            IG+ +TY+H GKQY+ I SG+GGW G+GL   L DP AGLGAVG +  L+ YT +GG + 
Sbjct  535  IGNVMTYEHGGKQYVGILSGIGGWAGIGLAAGLTDPNAGLGAVGGYAALSDYTALGGQLT  594

Query  598  VFSL  601
            VF L
Sbjct  595  VFKL  598


&gt;<input name="getSeqGi" value="347735130" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08868072" href="http://www.ncbi.nlm.nih.gov/protein/347735130?report=genbank&amp;log$=protalign&amp;blast_rank=49&amp;RID=CJ3JAY4J013">ref|ZP_08868072.1|</a><a name="347735130"></a>  methanol dehydrogenase subunit 1 [Azospirillum amazonense Y2]
 <a title="Show report for EGY02344" href="http://www.ncbi.nlm.nih.gov/protein/346921744?report=genbank&amp;log$=protalign&amp;blast_rank=49&amp;RID=CJ3JAY4J013">gb|EGY02344.1|</a><a name="346921744"></a>  methanol dehydrogenase subunit 1 [Azospirillum amazonense Y2]
Length=599

 Score =  643 bits (1658),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 320/594 (54%), Positives = 413/594 (70%), Gaps = 12/594 (2%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            + L   ++L++  + AN EL + SKD + WVMQ  DY+   +S L +I + NVK L+  W
Sbjct  12   TALVAVSLLSSHPSLANDELSKASKDSKQWVMQAGDYANQRYSSLKQITTANVKELRPVW  71

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            T STG L GHEG PLVV  +MY+HTPFPN VYA+DLN+  ++LW+Y+PKQ+P    V CC
Sbjct  72   TFSTGVLRGHEGGPLVVGDVMYVHTPFPNVVYALDLNNAGRILWKYEPKQDPTVIPVMCC  131

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            D VNRG+AY      G  KI LNQ D ++VAL+AKTG+E+WK+ N D   G T+TGAP +
Sbjct  132  DTVNRGVAY------GDGKIILNQADANVVALDAKTGKELWKVANGDPKKGETMTGAPVI  185

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
            VKDKVLVG +G E GV+G +TAYN+KDG   W+AY+ GPD+ +L+D              
Sbjct  186  VKDKVLVGISGGEFGVQGRMTAYNLKDGSVAWKAYSVGPDDQILVDPQKTTSLGKPIGAN  245

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
              LSTW+GD WK GGG  WGW +YDP+L++IYYGSGNP+ WN   RPGDNKW+MTI+ RD
Sbjct  246  SSLSTWQGDQWKTGGGATWGWTSYDPQLNLIYYGSGNPSTWNPKQRPGDNKWSMTIFARD  305

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGAL  372
            ADTG AK+ YQ TPHDEWDY GVN M L++ +V G     L H DRNG  YT+NRETG L
Sbjct  306  ADTGMAKWVYQMTPHDEWDYDGVNEMILADIKVKGTPVKALVHFDRNGFAYTMNRETGEL  365

Query  373  VNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDP  429
            + A K D  VNW   VD+KTG P    +YST     DHN KG+CP+A+G  +Q   SY P
Sbjct  366  LVAEKYDPAVNWATHVDMKTGRPEVVAQYSTDKNGEDHNTKGVCPAALGSKDQQPASYSP  425

Query  430  DKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG--MLGQVKAMNAVTGKME  487
            D  LF++  NH+CMD+EPF + Y AGQ +VGATL+M+P PKG   LG   A +A TGK+ 
Sbjct  426  DTGLFYVPTNHVCMDYEPFKVSYTAGQPYVGATLSMFP-PKGENHLGNFIAWDASTGKIV  484

Query  488  WEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHN  547
            W   E F+VW G L TAG + FYGTL+G++KA D +TG+  ++F+ PSG+IG+  TY+H 
Sbjct  485  WSDKETFSVWSGALTTAGGVAFYGTLEGYLKAVDMKTGKELYKFKTPSGIIGNVTTYEHG  544

Query  548  GKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GKQYIA+ SGVGGW G+G+   L   T GLGAVGA+++LA+YTQ+GG + VF+L
Sbjct  545  GKQYIAVLSGVGGWAGIGMAAGLGGDTDGLGAVGAYKQLANYTQLGGVLTVFAL  598


&gt;<input name="getSeqGi" value="296161485" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_06844291" href="http://www.ncbi.nlm.nih.gov/protein/296161485?report=genbank&amp;log$=protalign&amp;blast_rank=50&amp;RID=CJ3JAY4J013">ref|ZP_06844291.1|</a><a name="296161485"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. Ch1-1]
 <a title="Show report for EFG68112" href="http://www.ncbi.nlm.nih.gov/protein/295888300?report=genbank&amp;log$=protalign&amp;blast_rank=50&amp;RID=CJ3JAY4J013">gb|EFG68112.1|</a><a name="295888300"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. Ch1-1]
Length=605

 Score =  642 bits (1655),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 315/599 (53%), Positives = 410/599 (68%), Gaps = 16/599 (3%)

Query  12   GSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVA  71
            G  +  +A L++    A+S+LD L K+  NW  Q  DY+   +S L +IN +NV  L+VA
Sbjct  9    GLAILASAALSSFVAQADSQLDGLMKNPSNWAAQAGDYANHRYSPLKQINENNVGKLQVA  68

Query  72   WTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVAC  131
            WT+STG L GHEGAPLV+   MYIH+PFPN V A++L D +  +WQY PKQ+    +V C
Sbjct  69   WTMSTGVLRGHEGAPLVIGDTMYIHSPFPNKVIAINLKD-QTFIWQYLPKQDDQVVSVMC  127

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD VNRGLAY      G  KIFL Q D  +VALNAKTG+ +W  +N +   G T T AP 
Sbjct  128  CDTVNRGLAY------GDGKIFLQQADTKLVALNAKTGDVVWTAQNGNPKAGETNTNAPH  181

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            V  DKVL G +G E GVRG + AY+IK GK  W AY+TGPD+D+L+D D           
Sbjct  182  VFGDKVLTGISGGEFGVRGRLIAYDIKTGKPAWTAYSTGPDKDMLIDPDKTTTYADGKMV  241

Query  252  GLG----LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
             +G    L +W+GD WK+GGGT WGWYA+DPKL+++YYG+GNP  WN T RPGDNKW+M+
Sbjct  242  PVGADSSLKSWKGDQWKLGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNKWSMS  301

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            I+ RD +TG+AK+ YQ TPHDEWDY GVN M LS+  +DGK  P + H DRNG  YTLNR
Sbjct  302  IFARDLNTGQAKWVYQMTPHDEWDYDGVNEMILSDLSIDGKKVPAIVHFDRNGFGYTLNR  361

Query  368  ETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            ETG L+ A K D  VNW   VD+K+G PIR+  YST+    DHN KGICP+A+G  +Q  
Sbjct  362  ETGQLLVAQKFDPAVNWADHVDMKSGKPIRNAAYSTQAAGSDHNVKGICPAALGSKDQQP  421

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMNAV  482
             +YDP   LF +  NH+CMD+EPF + Y +GQ +VGATL+MYPGP     +G   A +A 
Sbjct  422  AAYDPGSSLFLVPTNHVCMDYEPFDVDYVSGQPYVGATLSMYPGPNDNNSMGNFIAWDAS  481

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             GK+ W  PE+F+VW G LATAG + FYGTL+G+IKA   + G+  W+F+ PSG+IG+  
Sbjct  482  KGKIVWSKPERFSVWSGVLATAGGVAFYGTLEGYIKAVRIKDGKELWRFKTPSGIIGNVF  541

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY++ GKQ+I +YSG+GGW G+G+   L+  T GLGAVG +RELA YT +GG++FVF++
Sbjct  542  TYEYQGKQFIGVYSGIGGWAGIGMAAGLEKSTEGLGAVGGYRELAKYTALGGTLFVFAI  600


&gt;<input name="getSeqGi" value="170690091" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_02881258" href="http://www.ncbi.nlm.nih.gov/protein/170690091?report=genbank&amp;log$=protalign&amp;blast_rank=51&amp;RID=CJ3JAY4J013">ref|ZP_02881258.1|</a><a name="170690091"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
graminis C4D1M]
 <a title="Show report for EDT12687" href="http://www.ncbi.nlm.nih.gov/protein/170144526?report=genbank&amp;log$=protalign&amp;blast_rank=51&amp;RID=CJ3JAY4J013">gb|EDT12687.1|</a><a name="170144526"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
graminis C4D1M]
Length=606

 Score =  642 bits (1655),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 314/599 (52%), Positives = 409/599 (68%), Gaps = 16/599 (3%)

Query  12   GSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVA  71
            G  +  +A L++    A+S+LD L K   NW  Q  DY+   +S L +IN  NV  L+VA
Sbjct  9    GLAILASAALSSIVAQADSQLDGLMKSPSNWAAQAGDYANHRYSPLKQINESNVGKLQVA  68

Query  72   WTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVAC  131
            WT+STG L GHEGAPLV+   MYIH+PFPN V A++L D +  +WQY+PKQ+ +  +V C
Sbjct  69   WTMSTGVLRGHEGAPLVIGDTMYIHSPFPNKVIAINLKD-QTFIWQYQPKQDDSVVSVMC  127

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD VNRGLAY      G  KIFL Q D  +VALNAKTG+ +W  +N +   G T T AP 
Sbjct  128  CDTVNRGLAY------GDGKIFLQQADTKLVALNAKTGDVVWSAQNGNPKAGETNTNAPH  181

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            V  DKVL G +G E GVRG + AY+IK GK  W A++TGPD+D+L+D D           
Sbjct  182  VFGDKVLTGISGGEFGVRGRLIAYDIKTGKPVWTAFSTGPDKDMLMDPDKTMTYTDGKMV  241

Query  252  GLG----LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
             +G    L +W+GD WK+GGGT WGWYA+DPKL+++YYG+GNP  WN T RPGDNKW+M+
Sbjct  242  PVGADSSLKSWKGDQWKLGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNKWSMS  301

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            I  RD +TG AK+ YQ TPHDEWDY GVN M LS+  +DGK  P + H DRNG  YTLNR
Sbjct  302  IMARDLNTGMAKWVYQMTPHDEWDYDGVNEMILSDLTIDGKKVPAIVHFDRNGFGYTLNR  361

Query  368  ETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            E+G L+ A K D  VNW   VDLK+G PIR+  YST+    DHN KGICP+A+G  +Q  
Sbjct  362  ESGQLLVAQKYDPAVNWADSVDLKSGKPIRNAAYSTQAAGSDHNVKGICPAALGSKDQQP  421

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMNAV  482
             ++DP+  LF +  NH+CMD+EPF + Y +GQ +VGATL+MYPGP     +G   A +A 
Sbjct  422  AAFDPNSSLFLVPTNHVCMDYEPFDVDYVSGQPYVGATLSMYPGPNENNAMGNFIAWDAA  481

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             GK+ W  PEKF+VW G LATAG + FYGTL+G++KA   + G+  W+F+ PSG+IG+  
Sbjct  482  KGKIVWSKPEKFSVWSGALATAGGIAFYGTLEGYLKAVRIKDGKELWRFKTPSGIIGNVF  541

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TYQ+ GKQY+ +YSG+GGW G+G+   L+  T GLGAVG +RELA YT +GG++FVF++
Sbjct  542  TYQYQGKQYVGVYSGIGGWAGIGMAAGLEKSTEGLGAVGGYRELAKYTALGGTLFVFAI  600


&gt;<input name="getSeqGi" value="91777706" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_552914" href="http://www.ncbi.nlm.nih.gov/protein/91777706?report=genbank&amp;log$=protalign&amp;blast_rank=52&amp;RID=CJ3JAY4J013">ref|YP_552914.1|</a><a name="91777706"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91777706[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=52"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_552914.1" border="0" height="16" width="16"></a> methanol dehydrogenase-like protein (xoxF) [Burkholderia xenovorans 
LB400]
 <a title="Show report for ABE33564" href="http://www.ncbi.nlm.nih.gov/protein/91690366?report=genbank&amp;log$=protalign&amp;blast_rank=52&amp;RID=CJ3JAY4J013">gb|ABE33564.1|</a><a name="91690366"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91690366[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=52"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABE33564.1" border="0" height="16" width="16"></a> Methanol dehydrogenase-like protein (xoxF) [Burkholderia xenovorans 
LB400]
Length=605

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4007077&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=52">GENE ID: 4007077 Bxe_B2427</a> | methanol dehydrogenase-like protein (xoxF)
[Burkholderia xenovorans LB400] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  641 bits (1653),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 314/599 (52%), Positives = 410/599 (68%), Gaps = 16/599 (3%)

Query  12   GSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVA  71
            G  +  +A L++    A+S+LD L K+  NW  Q  DY+   +S L +IN +NV  L+VA
Sbjct  9    GLAILASAALSSFVAQADSQLDGLMKNPSNWAAQAGDYANHRYSPLKQINENNVGKLQVA  68

Query  72   WTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVAC  131
            WT+STG L GHEGAPLV+   MYIH+PFPN V A++L D +  +WQY PKQ+    +V C
Sbjct  69   WTMSTGVLRGHEGAPLVIGDTMYIHSPFPNKVIAINLKD-QTFIWQYLPKQDDQVVSVMC  127

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD VNRGLAY      G  KIFL Q D  +VALNAKTG+ +W  +N +   G T T AP 
Sbjct  128  CDTVNRGLAY------GDGKIFLQQADTKLVALNAKTGDVVWTAQNGNPKAGETNTNAPH  181

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            V  DKVL G +G E GVRG + AY+IK GK  W AY+TGPD+D+L+D D           
Sbjct  182  VFGDKVLTGISGGEFGVRGRLIAYDIKTGKPAWTAYSTGPDKDMLIDPDKTTTYADGKMV  241

Query  252  GLG----LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
             +G    L +W+GD WK+GGGT WGWYA+DPKL+++YYG+GNP  WN T RPGDNKW+M+
Sbjct  242  PVGADSSLKSWKGDQWKLGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNKWSMS  301

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            I+ RD +TG+A++ YQ TPHDEWDY GVN M LS+  +DGK  P + H DRNG  YTLNR
Sbjct  302  IFARDLNTGQARWVYQMTPHDEWDYDGVNEMILSDLSIDGKKVPAIVHFDRNGFGYTLNR  361

Query  368  ETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            ETG L+ A K D  VNW   VD+K+G PIR+  YST+    DHN KGICP+A+G  +Q  
Sbjct  362  ETGQLLVAQKFDPAVNWADHVDMKSGKPIRNAAYSTQAAGSDHNVKGICPAALGSKDQQP  421

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMNAV  482
             +YDP   LF +  NH+CMD+EPF + Y +GQ +VGATL+MYPGP     +G   A +A 
Sbjct  422  AAYDPGSSLFLVPTNHVCMDYEPFDVDYVSGQPYVGATLSMYPGPNDNNSMGNFIAWDAS  481

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             GK+ W  PE+F+VW G LATAG + FYGTL+G+IKA   + G+  W+F+ PSG+IG+  
Sbjct  482  KGKIVWSKPERFSVWSGVLATAGGVAFYGTLEGYIKAVRIKDGKELWRFKTPSGIIGNVF  541

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY++ GKQ+I +YSG+GGW G+G+   L+  T GLGAVG +RELA YT +GG++FVF++
Sbjct  542  TYEYQGKQFIGVYSGIGGWAGIGMAAGLEKSTEGLGAVGGYRELAKYTALGGTLFVFAI  600


&gt;<input name="getSeqGi" value="114328586" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_745743" href="http://www.ncbi.nlm.nih.gov/protein/114328586?report=genbank&amp;log$=protalign&amp;blast_rank=53&amp;RID=CJ3JAY4J013">ref|YP_745743.1|</a><a name="114328586"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114328586[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=53"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_745743.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit 1 [Granulibacter bethesdensis 
CGDNIH1]
 <a title="Show report for ABI62820" href="http://www.ncbi.nlm.nih.gov/protein/114316760?report=genbank&amp;log$=protalign&amp;blast_rank=53&amp;RID=CJ3JAY4J013">gb|ABI62820.1|</a><a name="114316760"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114316760[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=53"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABI62820.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit 1 [Granulibacter bethesdensis 
CGDNIH1]
Length=615

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4274441&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=53">GENE ID: 4274441 GbCGDNIH1_1922</a> | methanol dehydrogenase subunit 1
[Granulibacter bethesdensis CGDNIH1] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  638 bits (1645),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 309/605 (51%), Positives = 408/605 (67%), Gaps = 11/605 (2%)

Query  1    MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI  60
            M+  K       ++ A   + A     AN +L +LSK+  NW MQ  D++   +S L +I
Sbjct  16   MKSSKRLLAMSVAVSAFVGLTAVDGARANEDLAKLSKNPANWSMQAGDFANQRYSALKQI  75

Query  61   NSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKP  120
               N   L   W+ STG L GHEG PLV+  +MY+HTPFPN V+A+DLND  +++W Y+P
Sbjct  76   TVANAGKLHPVWSFSTGVLRGHEGGPLVIGDVMYVHTPFPNKVFALDLNDNGRVIWSYEP  135

Query  121  KQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDI  180
            KQ+P    V CCD VNRG+AY      G  KI L Q D  +VAL+AKTG+E+WK+ N D 
Sbjct  136  KQDPEVIPVMCCDTVNRGVAY------GDGKIILAQADTKVVALDAKTGKEVWKVTNGDP  189

Query  181  AMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKD  240
              G T T APF+VKDKV+VG +G E GV+G +TAY++KDGK  W+A++TGPD+ +L D  
Sbjct  190  KKGETSTSAPFIVKDKVIVGISGGEFGVQGRLTAYSLKDGKLVWKAFSTGPDDQILFDDK  249

Query  241  FNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPG  300
                    G+    + TW+GD WK GGG  WGWY+YDPKL+++YYGSGNP+ WN   RPG
Sbjct  250  TTALGKPVGK-DSSIKTWQGDQWKTGGGATWGWYSYDPKLNLVYYGSGNPSTWNPVQRPG  308

Query  301  DNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNG  360
            +NKW+MTI+ RDADTG AK+ YQ TPHDEWDY G+N M L++ +V+GK T  L H DRNG
Sbjct  309  ENKWSMTIFARDADTGVAKWVYQMTPHDEWDYDGINEMILADTKVNGKETKALVHFDRNG  368

Query  361  LVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAM  417
              Y L+R TG L+ A K D  VNW   VDLKTGLP R  +YST     DHN KGICP+A+
Sbjct  369  FAYVLDRVTGELLQANKFDPIVNWATGVDLKTGLPDRVKKYSTEAGGEDHNTKGICPAAL  428

Query  418  GYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP-KGMLGQV  476
            G  +Q   S+DP   +F++  NHICMD+EPF + Y AGQ FVG+T+NMYP P +  LG  
Sbjct  429  GVKDQQPASFDPQNHMFYVPTNHICMDYEPFKVSYTAGQPFVGSTVNMYPPPGENHLGNF  488

Query  477  KAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSG  536
             A +   GK+ W  PE F+VW G L+TAG +V+YGTL+G++KA D +TG+L ++++ PSG
Sbjct  489  IAYDVNKGKIAWSDPELFSVWSGALSTAGGVVYYGTLEGYLKAVDAKTGKLLYKYKTPSG  548

Query  537  VIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSV  596
            +IG+   Y+H GKQYIA+ SG+GGW G+G+   L     GLGAVGA+R LA+YTQ+GG +
Sbjct  549  IIGNVNAYEHKGKQYIAVLSGLGGWAGIGMAAGLSGDAEGLGAVGAYRSLANYTQLGGVL  608

Query  597  FVFSL  601
             VF +
Sbjct  609  TVFGI  613


&gt;<input name="getSeqGi" value="218533308" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_002424123" href="http://www.ncbi.nlm.nih.gov/protein/218533308?report=genbank&amp;log$=protalign&amp;blast_rank=54&amp;RID=CJ3JAY4J013">ref|YP_002424123.1|</a><a name="218533308"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=218533308[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=54"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002424123.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
chloromethanicum CM4]
 <a title="Show report for ACK86195" href="http://www.ncbi.nlm.nih.gov/protein/218525611?report=genbank&amp;log$=protalign&amp;blast_rank=54&amp;RID=CJ3JAY4J013">gb|ACK86195.1|</a><a name="218525611"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=218525611[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=54"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACK86195.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
chloromethanicum CM4]
Length=599

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=7119227&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=54">GENE ID: 7119227 Mchl_5444</a> | PQQ-dependent dehydrogenase, methanol/ethanol
family [Methylobacterium chloromethanicum CM4]

 Score =  637 bits (1642),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 314/601 (52%), Positives = 417/601 (69%), Gaps = 22/601 (4%)

Query  14   MLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWT  73
             L +   L      AN ++ + ++D    V+QT DY+ T +S+L +IN+ NVKNL+VAWT
Sbjct  6    FLGLMLALGTTGALANEDVLKRTQDPNQQVLQTVDYANTRYSKLDQINASNVKNLQVAWT  65

Query  74   LSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCD  133
             STG L GHEG+PLVV  IMY+HTPFPN VYA+DLN+  K+LW+Y+PKQ+P+   V CCD
Sbjct  66   FSTGVLRGHEGSPLVVGDIMYVHTPFPNIVYALDLNNEAKILWKYEPKQDPSVIPVMCCD  125

Query  134  VVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVV  193
             VNRGLAY          IFL+Q D  +V+L+AK+G+  W ++N D A+G T T     V
Sbjct  126  TVNRGLAYADGA------IFLHQADTTLVSLDAKSGKVNWSVKNGDPAVGETNTATVMPV  179

Query  194  KDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ---  250
            KDK++VG +GAE G+RG++TAYN+KDGK+ WRAY  GPD ++L+D +      H G+   
Sbjct  180  KDKLIVGISGAEFGIRGHITAYNLKDGKRAWRAYTVGPDNEMLVDPE---KTTHLGKPIG  236

Query  251  FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWG  310
                L TW+GD WK GGG  WGWY+YDPKL+++YYG+ NP+ WN   RPGDNKWTM+I+ 
Sbjct  237  KDSSLKTWDGDQWKTGGGATWGWYSYDPKLNLVYYGTANPSTWNPKQRPGDNKWTMSIFA  296

Query  311  RDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETG  370
            RD DTG AK+ YQ TPHDEWDY G+N M L++Q+VDGK  PLLTH DRNG  YTL+R TG
Sbjct  297  RDPDTGMAKWVYQMTPHDEWDYDGINEMILTDQKVDGKDRPLLTHFDRNGFGYTLDRATG  356

Query  371  ALVNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQ  422
             ++ A K D  VNW  KVD+       G P+   +YST     D N+KGICP+A+G  +Q
Sbjct  357  EVLVAEKFDPVVNWATKVDMDKGSKTYGRPLVVSKYSTEQNGEDVNSKGICPAALGSKDQ  416

Query  423  GIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMN  480
               +Y P   LF++  NH+CMD+EPF + Y  GQ +VGATL+MYP P   G +G   A +
Sbjct  417  QPAAYSPKTGLFYVPTNHVCMDYEPFRVTYTPGQPYVGATLSMYPAPGSHGGMGNFIAWD  476

Query  481  AVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGH  540
             + GK++W  PE+F+VW G LATAGD+VFYGTL+G++KA D++TG+  ++F+  SGVIG+
Sbjct  477  NLQGKIKWSNPEQFSVWSGALATAGDVVFYGTLEGYLKAVDSKTGKELYRFKTASGVIGN  536

Query  541  PITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFS  600
             +TY H GKQ+IA+ SGVGGW G+GL   L DP AGLGAVG +  L+ YT +GG + VF+
Sbjct  537  VMTYTHKGKQHIAVLSGVGGWAGIGLAAGLTDPNAGLGAVGGYAALSSYTNLGGQLTVFA  596

Query  601  L  601
            L
Sbjct  597  L  597


&gt;<input name="getSeqGi" value="307727456" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_003910669" href="http://www.ncbi.nlm.nih.gov/protein/307727456?report=genbank&amp;log$=protalign&amp;blast_rank=55&amp;RID=CJ3JAY4J013">ref|YP_003910669.1|</a><a name="307727456"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=307727456[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=55"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003910669.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. CCGE1003]
 <a title="Show report for ADN61378" href="http://www.ncbi.nlm.nih.gov/protein/307587981?report=genbank&amp;log$=protalign&amp;blast_rank=55&amp;RID=CJ3JAY4J013">gb|ADN61378.1|</a><a name="307587981"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=307587981[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=55"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADN61378.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. CCGE1003]
Length=605

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=9764174&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=55">GENE ID: 9764174 BC1003_5460</a> | PQQ-dependent dehydrogenase, methanol/ethanol
family [Burkholderia sp. CCGE1003]

 Score =  635 bits (1638),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 310/599 (52%), Positives = 408/599 (68%), Gaps = 16/599 (3%)

Query  12   GSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVA  71
            G  +  +A L++    A+ +LD + K   NW  Q  DY+   +S L +IN  NV  L+VA
Sbjct  9    GLAILASAALSSIVAQADPQLDGVMKSPSNWATQAGDYANHRYSPLKQINESNVGKLQVA  68

Query  72   WTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVAC  131
            WT+STG L GHEGAPLV+   MYIH+PFPN V A++L D +  +WQY PKQ+ +  +V C
Sbjct  69   WTMSTGVLRGHEGAPLVIGDTMYIHSPFPNKVIAINLKD-QTFIWQYLPKQDDSVVSVMC  127

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD VNRGLAY      G  KIFL Q D  +VAL+AK+G+ +W  +N +   G T T AP 
Sbjct  128  CDTVNRGLAY------GDGKIFLQQADTKLVALDAKSGDVVWTAQNGNPKAGETNTNAPH  181

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            V  DKVL G +G E GVRG + AY+IK GK  W AY+TGPD+D+L+D D           
Sbjct  182  VFGDKVLTGISGGEFGVRGRLIAYDIKTGKPAWTAYSTGPDKDMLMDPDKTMTYTDGKMV  241

Query  252  GLG----LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
             +G    L +W+GD WK+GGGT WGWYA+DPKL+++YYG+GNP  WN T RPGDNKW+M+
Sbjct  242  PVGADSSLKSWKGDQWKLGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNKWSMS  301

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            I+ RD +TG AK+ YQ TPHDEWDY GVN M LS+  +DGK  P + H DRNG  YTLNR
Sbjct  302  IFARDLNTGMAKWVYQMTPHDEWDYDGVNEMILSDLTIDGKKVPAIVHFDRNGFGYTLNR  361

Query  368  ETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            E+G L+ A K D  VNW   VDLK+G P+R+  YST+    DHN KGICP+A+G  +Q  
Sbjct  362  ESGQLLVAQKYDPAVNWADSVDLKSGKPVRNVAYSTQAAGSDHNVKGICPAALGSKDQQP  421

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMNAV  482
             ++DP+  LF +  NH+CMD+EPF + Y +GQ +VGATL+MYPGP     +G   A +A 
Sbjct  422  AAFDPNSSLFLVPTNHVCMDYEPFDVDYVSGQPYVGATLSMYPGPNENKAMGNFIAWDAA  481

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             GK+ W  PEKF+VW G LATAG + FYGTL+G++KA   + G+  W+F+ PSG+IG+  
Sbjct  482  KGKIVWSKPEKFSVWSGALATAGGIAFYGTLEGYLKAVRIKDGKELWRFKTPSGIIGNVF  541

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TYQ+ GKQY+ +YSG+GGW G+G+   L+  T GLGAVG +RELA YT +GG++FVF++
Sbjct  542  TYQYQGKQYVGVYSGIGGWAGIGMAAGLEKSTEGLGAVGGYRELAKYTALGGTLFVFAI  600


&gt;<input name="getSeqGi" value="209522393" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_03271004" href="http://www.ncbi.nlm.nih.gov/protein/209522393?report=genbank&amp;log$=protalign&amp;blast_rank=56&amp;RID=CJ3JAY4J013">ref|ZP_03271004.1|</a><a name="209522393"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. H160]
 <a title="Show report for EDZ97416" href="http://www.ncbi.nlm.nih.gov/protein/209497172?report=genbank&amp;log$=protalign&amp;blast_rank=56&amp;RID=CJ3JAY4J013">gb|EDZ97416.1|</a><a name="209497172"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. H160]
Length=605

 Score =  635 bits (1637),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 318/603 (53%), Positives = 414/603 (69%), Gaps = 21/603 (3%)

Query  10   CGGSMLAMAAV--LAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKN  67
             G ++LA AA   LAAQ   A+S+LD L K+  NW  Q  DY+   +S L +IN +NV  
Sbjct  8    LGLAILASAAFGSLAAQ---ADSQLDGLMKNPSNWAAQAGDYANHRYSPLKQINENNVGK  64

Query  68   LKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAAR  127
            L+VAWT+STG L GHEGAPLV+   MYIH+PFPN V A++L D +  LWQY+PKQ+    
Sbjct  65   LQVAWTMSTGVLRGHEGAPLVLGDTMYIHSPFPNKVIAINLKD-QTFLWQYQPKQDDQVV  123

Query  128  AVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLT  187
            +V CCD VNRGLAY      G  KIFL Q D  +VALNAKTGE +W  +N +   G T T
Sbjct  124  SVMCCDTVNRGLAY------GDGKIFLQQADTKLVALNAKTGEVVWTAQNGNPKAGETNT  177

Query  188  GAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLD--KDFNKDN  245
             AP V  DKVL G +G E GVRG + AY+IK GK  W AY+TGPD ++LLD  K     N
Sbjct  178  NAPHVFGDKVLTGISGGEFGVRGRLIAYDIKTGKPVWTAYSTGPDNEMLLDPQKTMTYSN  237

Query  246  PHYGQFGL--GLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNK  303
                  G    + +W+GD WK+GGGT WGWYA+DPKL+++YYG+GNP  WN T RPGDNK
Sbjct  238  GQMVPVGSDSSVKSWKGDQWKLGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNK  297

Query  304  WTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVY  363
            W+M+I+ RD +TG AK+ YQ TPHDEWDY GVN M LS+  ++GK  P + H DRNG  Y
Sbjct  298  WSMSIFARDLNTGTAKWVYQMTPHDEWDYDGVNEMILSDLTINGKKVPAIVHFDRNGFGY  357

Query  364  TLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTR---MDHNAKGICPSAMGYH  420
            TLNRETG L+ A K D  VNW  +VDL++GLPIR+  YST+    DHN KGICP+A+G  
Sbjct  358  TLNRETGQLLVAQKYDPAVNWADRVDLQSGLPIRNAAYSTQAAGADHNVKGICPAALGSK  417

Query  421  NQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKA  478
            +Q   ++DP   LF +  NH+CMD+EPF + Y +GQ +VGATL+MYPGP     +G   A
Sbjct  418  DQQPAAFDPKSSLFLVPTNHVCMDYEPFEVDYVSGQPYVGATLSMYPGPNEGNSMGNFIA  477

Query  479  MNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVI  538
             +A  GK+ +  PE+F+VW G LAT G + FYGTL+G++KA     G+  W+F+ PSG+I
Sbjct  478  WDASKGKIVYSKPERFSVWSGVLATGGGIAFYGTLEGYLKAVRISDGKELWRFKTPSGII  537

Query  539  GHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFV  598
            G+  TY++ GKQY+ +YSG+GGW G+G+   L+ PT GLGAVG +++LA YT +GG++FV
Sbjct  538  GNVFTYEYQGKQYVGVYSGIGGWAGIGMAAGLEKPTEGLGAVGGYKDLAKYTALGGTLFV  597

Query  599  FSL  601
            F++
Sbjct  598  FAI  600


&gt;<input name="getSeqGi" value="77463132" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_352636" href="http://www.ncbi.nlm.nih.gov/protein/77463132?report=genbank&amp;log$=protalign&amp;blast_rank=57&amp;RID=CJ3JAY4J013">ref|YP_352636.1|</a><a name="77463132"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=77463132[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=57"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_352636.1" border="0" height="16" width="16"></a> putative PQQ dehydrogenase protein [Rhodobacter sphaeroides 2.4.1]
 <a title="Show report for YP_002525251" href="http://www.ncbi.nlm.nih.gov/protein/221638989?report=genbank&amp;log$=protalign&amp;blast_rank=57&amp;RID=CJ3JAY4J013">ref|YP_002525251.1|</a><a name="221638989"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=221638989[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=57"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002525251.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodobacter sphaeroides KD131]
 <a title="Show report for ZP_08412328" href="http://www.ncbi.nlm.nih.gov/protein/332558006?report=genbank&amp;log$=protalign&amp;blast_rank=57&amp;RID=CJ3JAY4J013">ref|ZP_08412328.1|</a><a name="332558006"></a>  Pyrrolo-quinoline quinone precursor [Rhodobacter sphaeroides 
WS8N]
 <a title="Show report for ABA78735" href="http://www.ncbi.nlm.nih.gov/protein/77387550?report=genbank&amp;log$=protalign&amp;blast_rank=57&amp;RID=CJ3JAY4J013">gb|ABA78735.1|</a><a name="77387550"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=77387550[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=57"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABA78735.1" border="0" height="16" width="16"></a> putative pqq dehydrogenase protein [Rhodobacter sphaeroides 2.4.1]
 <a title="Show report for ACM00750" href="http://www.ncbi.nlm.nih.gov/protein/221159770?report=genbank&amp;log$=protalign&amp;blast_rank=57&amp;RID=CJ3JAY4J013">gb|ACM00750.1|</a><a name="221159770"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=221159770[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=57"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACM00750.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone precursor [Rhodobacter sphaeroides 
KD131]
 <a title="Show report for EGJ21033" href="http://www.ncbi.nlm.nih.gov/protein/332275718?report=genbank&amp;log$=protalign&amp;blast_rank=57&amp;RID=CJ3JAY4J013">gb|EGJ21033.1|</a><a name="332275718"></a>  Pyrrolo-quinoline quinone precursor [Rhodobacter sphaeroides 
WS8N]
Length=600

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=3720211&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=57">GENE ID: 3720211 xoxF</a> | putative PQQ dehydrogenase protein
[Rhodobacter sphaeroides 2.4.1]

 Score =  633 bits (1633),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/597 (52%), Positives = 410/597 (69%), Gaps = 16/597 (3%)

Query  15   LAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTL  74
            L    +L++    AN  + + + D + W +QT DY+ T +S L +I   NV  L+VAWT 
Sbjct  8    LVATLLLSSAPVFANDSVLKATDDPKQWAIQTGDYANTRYSELNQITRENVGKLQVAWTF  67

Query  75   STGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDV  134
            STG L GHEG+PLVVDGIMY+HTPFPNNVYA+DL +  K+LW+Y+P+QNP    V CCD 
Sbjct  68   STGVLRGHEGSPLVVDGIMYVHTPFPNNVYALDLANDGKILWRYEPQQNPDVIGVMCCDT  127

Query  135  VNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVK  194
            VNRG+AY          IFL+Q D  +VAL+AK+GE  W ++N D A G T T     VK
Sbjct  128  VNRGVAYADG------MIFLHQADTTVVALDAKSGEVKWTVQNGDPAKGETNTATVLPVK  181

Query  195  DKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLG  254
            DK+LVG +G E GVRG+VTAY++K GKQ WRAY+TGPD ++L+D +              
Sbjct  182  DKLLVGISGGEFGVRGHVTAYDMKTGKQVWRAYSTGPDAEMLVDPEKTMVLGKPVGADSS  241

Query  255  LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDAD  314
            + +WEGD W+IGGGT WGWY+YDP L+++YYG+GNP+ WN + RPGDNKW+MTI  RDAD
Sbjct  242  IKSWEGDQWQIGGGTTWGWYSYDPDLNLVYYGTGNPSTWNPSQRPGDNKWSMTIMARDAD  301

Query  315  TGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVN  374
            TG AK+ YQKTPHDEWDY GVN   L +QE+DG++  LL + DRNG  YTL+RETG L+ 
Sbjct  302  TGMAKWMYQKTPHDEWDYDGVNENILVDQEIDGQMRKLLVNLDRNGFGYTLDRETGELLV  361

Query  375  AFKIDDTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIES  426
            A K D  VNW  +V +     + G P    EYST     D N  G+CP+A+G  +Q   S
Sbjct  362  AKKYDPAVNWATEVVMDKESDQYGRPQVVAEYSTAQNGEDTNTTGVCPAALGSKDQQPAS  421

Query  427  YDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTG  484
            + P   L ++  NH+CMD+EP+ + Y AGQ +VGATL+MYP P   G +G   A +A  G
Sbjct  422  FSPKTGLVYVPTNHVCMDYEPYRVSYSAGQPYVGATLSMYPAPNSHGGMGNFIAWDATKG  481

Query  485  KMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITY  544
            +++W +PE+F+VW G LATAGD+VFYGTL+G++KA D  TGEL ++F+ PSGVIG+ +TY
Sbjct  482  EIKWSLPEQFSVWSGALATAGDVVFYGTLEGYLKAVDAETGELLYRFKTPSGVIGNVMTY  541

Query  545  QHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            + NGKQY+ + SGVGGW G+GL   L +P  GLGAVG +  L+ YTQ+GG + VF+L
Sbjct  542  EFNGKQYVGVLSGVGGWAGIGLAAGLTNPNEGLGAVGGYAALSDYTQLGGQLTVFAL  598


&gt;<input name="getSeqGi" value="126462004" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001043118" href="http://www.ncbi.nlm.nih.gov/protein/126462004?report=genbank&amp;log$=protalign&amp;blast_rank=58&amp;RID=CJ3JAY4J013">ref|YP_001043118.1|</a><a name="126462004"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=126462004[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=58"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001043118.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodobacter sphaeroides ATCC 17029]
 <a title="Show report for ABN76346" href="http://www.ncbi.nlm.nih.gov/protein/126103668?report=genbank&amp;log$=protalign&amp;blast_rank=58&amp;RID=CJ3JAY4J013">gb|ABN76346.1|</a><a name="126103668"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=126103668[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=58"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABN76346.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodobacter sphaeroides ATCC 17029]
Length=600

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4896110&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=58">GENE ID: 4896110 Rsph17029_1236</a> | Pyrrolo-quinoline quinone
[Rhodobacter sphaeroides ATCC 17029]

 Score =  633 bits (1633),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/597 (52%), Positives = 410/597 (69%), Gaps = 16/597 (3%)

Query  15   LAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTL  74
            L    +L++    AN  + + + D + W +QT DY+ T +S L +I   NV  L+VAWT 
Sbjct  8    LVATLLLSSAPVFANDSVLKATDDPKQWAIQTGDYANTRYSELNQITRENVGKLQVAWTF  67

Query  75   STGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDV  134
            STG L GHEG+PLVVDGIMY+HTPFPNNVYA+DL +  K+LW+Y+P+QNP    V CCD 
Sbjct  68   STGVLRGHEGSPLVVDGIMYVHTPFPNNVYALDLANDGKILWRYEPQQNPDVIGVMCCDT  127

Query  135  VNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVK  194
            VNRG+AY          IFL+Q D  +VAL+AK+GE  W ++N D A G T T     VK
Sbjct  128  VNRGVAYADG------MIFLHQADTTVVALDAKSGEVKWTVQNGDPAKGETNTATVLPVK  181

Query  195  DKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLG  254
            DK+LVG +G E GVRG+VTAY++K GKQ WRAY+TGPD ++L+D +              
Sbjct  182  DKLLVGISGGEFGVRGHVTAYDMKTGKQVWRAYSTGPDAEMLVDPENTMVLGKPVGADSS  241

Query  255  LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDAD  314
            + +WEGD W+IGGGT WGWY+YDP L+++YYG+GNP+ WN + RPGDNKW+MTI  RDAD
Sbjct  242  IKSWEGDQWQIGGGTTWGWYSYDPDLNLVYYGTGNPSTWNPSQRPGDNKWSMTIMARDAD  301

Query  315  TGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVN  374
            TG AK+ YQKTPHDEWDY GVN   L +QE+DG++  LL + DRNG  YTL+RETG L+ 
Sbjct  302  TGMAKWMYQKTPHDEWDYDGVNENILVDQEIDGQMRKLLVNLDRNGFGYTLDRETGELLV  361

Query  375  AFKIDDTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIES  426
            A K D  VNW  +V +     + G P    EYST     D N  G+CP+A+G  +Q   S
Sbjct  362  AKKYDPAVNWATEVVMDKESDQYGRPQVVAEYSTAQNGEDTNTTGVCPAALGSKDQQPAS  421

Query  427  YDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTG  484
            + P   L ++  NH+CMD+EP+ + Y AGQ +VGATL+MYP P   G +G   A +A  G
Sbjct  422  FSPKTGLVYVPTNHVCMDYEPYRVSYSAGQPYVGATLSMYPAPNSHGGMGNFIAWDATKG  481

Query  485  KMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITY  544
            +++W +PE+F+VW G LATAGD+VFYGTL+G++KA D  TGEL ++F+ PSGVIG+ +TY
Sbjct  482  EIKWSLPEQFSVWSGALATAGDVVFYGTLEGYLKAVDAETGELLYRFKTPSGVIGNVMTY  541

Query  545  QHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            + NGKQY+ + SGVGGW G+GL   L +P  GLGAVG +  L+ YTQ+GG + VF+L
Sbjct  542  EFNGKQYVGVLSGVGGWAGIGLAAGLTNPNEGLGAVGGYAALSDYTQLGGQLTVFAL  598


&gt;<input name="getSeqGi" value="295698891" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_003606784" href="http://www.ncbi.nlm.nih.gov/protein/295698891?report=genbank&amp;log$=protalign&amp;blast_rank=59&amp;RID=CJ3JAY4J013">ref|YP_003606784.1|</a><a name="295698891"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=295698891[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=59"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003606784.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. CCGE1002]
 <a title="Show report for ADG17273" href="http://www.ncbi.nlm.nih.gov/protein/295438104?report=genbank&amp;log$=protalign&amp;blast_rank=59&amp;RID=CJ3JAY4J013">gb|ADG17273.1|</a><a name="295438104"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=295438104[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=59"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADG17273.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Burkholderia 
sp. CCGE1002]
Length=605

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=9112531&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=59">GENE ID: 9112531 BC1002_3228</a> | PQQ-dependent dehydrogenase, methanol/ethanol
family [Burkholderia sp. CCGE1002]

 Score =  633 bits (1633),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/582 (53%), Positives = 403/582 (69%), Gaps = 16/582 (3%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            +S+LD L K+  NW  Q  DY+   +S L +IN +NV  L+VAWT+STG L GHEGAPLV
Sbjct  26   DSQLDGLMKNPANWAAQAGDYANHRYSPLKQINENNVGKLQVAWTMSTGVLRGHEGAPLV  85

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            +   MYIH+PFPN V AV+L D +  LWQY+PKQ+    +V CCD VNRGLAY      G
Sbjct  86   IGDTMYIHSPFPNKVIAVNLKD-QTFLWQYQPKQDEQVVSVMCCDTVNRGLAY------G  138

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
              KIFL Q D  +VALNAKTGE +W  +N +   G T T AP V  DKVL G +G E GV
Sbjct  139  DGKIFLQQADTKLVALNAKTGEVVWTAQNGNPKAGETNTNAPHVFGDKVLTGISGGEFGV  198

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLD--KDFNKDNPHYGQFGL--GLSTWEGDAWK  264
            RG + AY+IK GKQ W AY+TGPD ++LLD  K     N      G    + +W+GD WK
Sbjct  199  RGRLIAYDIKTGKQVWTAYSTGPDNEMLLDPQKTMTYSNGQMVPVGADSSVKSWKGDQWK  258

Query  265  IGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQK  324
            +GGGT WGWYA+DPKL+++YYG+GNP  WN T RPGDNKW+M+I+ RD +TG AK+ YQ 
Sbjct  259  LGGGTTWGWYAWDPKLNLVYYGTGNPGTWNPTQRPGDNKWSMSIFARDLNTGTAKWVYQM  318

Query  325  TPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNW  384
            TPHDEWDY GVN M LS+  ++GK  P + H DRNG  YTLNRETG L+ A K D  VNW
Sbjct  319  TPHDEWDYDGVNEMILSDLTINGKKVPAIVHFDRNGFGYTLNRETGQLLVAQKYDPAVNW  378

Query  385  VKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHI  441
              +VDL++GLPIR+  YST+    DHN KGICP+A+G  +Q   ++DP   LF +  NH+
Sbjct  379  ADRVDLQSGLPIRNAAYSTQAAGSDHNVKGICPAALGSKDQQPAAFDPKTSLFLVPTNHV  438

Query  442  CMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTGKMEWEVPEKFAVWGG  499
            CMD+EPF + Y +GQ +VGATL+MYPGP     +G   A +A  GK+ +  PEKF+VW G
Sbjct  439  CMDYEPFDVDYVSGQPYVGATLSMYPGPNEGNAMGNFIAWDASKGKIVYSKPEKFSVWSG  498

Query  500  TLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVG  559
             LAT G + FYGTL+G++KA     G+  W+F+ PSG+IG+  TY++ GKQY+ +YSG+G
Sbjct  499  VLATGGGIAFYGTLEGYLKAVRISDGKELWRFKTPSGIIGNVFTYEYQGKQYVGVYSGIG  558

Query  560  GWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GW G+G+   L+ PT GLGAVG +++LA YT +GG++FVF++
Sbjct  559  GWAGIGMAAGLEKPTEGLGAVGGYKDLAKYTALGGTLFVFAI  600


&gt;<input name="getSeqGi" value="149203282" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_01880252" href="http://www.ncbi.nlm.nih.gov/protein/149203282?report=genbank&amp;log$=protalign&amp;blast_rank=60&amp;RID=CJ3JAY4J013">ref|ZP_01880252.1|</a><a name="149203282"></a>  putative methanol dehydrogenase protein, large subunit [Roseovarius 
sp. TM1035]
 <a title="Show report for EDM31154" href="http://www.ncbi.nlm.nih.gov/protein/149143115?report=genbank&amp;log$=protalign&amp;blast_rank=60&amp;RID=CJ3JAY4J013">gb|EDM31154.1|</a><a name="149143115"></a>  putative methanol dehydrogenase protein, large subunit [Roseovarius 
sp. TM1035]
Length=600

 Score =  633 bits (1632),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 316/604 (52%), Positives = 408/604 (68%), Gaps = 24/604 (4%)

Query  13   SMLAMAAVLAAQS--THANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKV  70
            S+L  AA     S    ANS+L  L  D   W +QT DY+ T +S L +IN  NV  L+V
Sbjct  4    SLLMSAAFFVGASGMATANSDLQALIDDPTQWAIQTGDYANTRYSELEQINKDNVGKLQV  63

Query  71   AWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVA  130
            AWT STG L GHEG+PLV+  IMY+HTPFPN VYA+DL++  K++W+Y+PKQ+P    V 
Sbjct  64   AWTFSTGVLRGHEGSPLVIGDIMYVHTPFPNIVYALDLSNNGKIIWKYEPKQDPNVIPVM  123

Query  131  CCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAP  190
            CCD VNRG+AY         KIFL+Q D  +VAL+AK+GE  W   N D ++G T T   
Sbjct  124  CCDTVNRGVAYADG------KIFLHQADTTVVALDAKSGEVKWTAVNGDPSIGETNTATV  177

Query  191  FVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ  250
              VKDKV+VG +G E GVRG+ TAY++  G+  WRAY+ GPD D L+D +   +  H G+
Sbjct  178  LPVKDKVIVGISGGEFGVRGHTTAYDMNTGELVWRAYSMGPDSDTLIDPE---NTTHLGK  234

Query  251  F---GLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMT  307
                  G +TWEGD WKIGGG+ WGWY+YD +LD+ YYG+GNP+ WN   RPGDN+W+MT
Sbjct  235  PVGPDSGTNTWEGDQWKIGGGSTWGWYSYDAELDLFYYGTGNPSTWNPAQRPGDNRWSMT  294

Query  308  IWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNR  367
            I  RD D G+AK+ YQ TPHDEWDY GVN M L++QEVDG++  LLTHPDRNGL YTL+R
Sbjct  295  IMARDPDDGKAKWLYQMTPHDEWDYDGVNEMILTDQEVDGQMRKLLTHPDRNGLAYTLDR  354

Query  368  ETGALVNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGY  419
            ETG L+ A K D  VNW   VD+       G P    EYST     D N+ GICP+A+G 
Sbjct  355  ETGELLVAEKFDPVVNWTTGVDMDPASPTYGRPAVVAEYSTEQNGEDVNSTGICPAALGT  414

Query  420  HNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVK  477
             +Q   +Y P   LF++  NH+CMD+EPF + Y AGQ +VGATL MYP P   G +G   
Sbjct  415  KDQQPSAYSPKTGLFYIPTNHVCMDYEPFRVSYTAGQPYVGATLAMYPAPGSHGGMGNFI  474

Query  478  AMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGV  537
            A + + GK++W +PE+F+VW G LATAGD+VFYGTL+G++KA D  +G+  + F+ PSG+
Sbjct  475  AWDNIEGKIKWSIPEQFSVWSGALATAGDVVFYGTLEGYLKAIDASSGDELYSFKTPSGI  534

Query  538  IGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVF  597
            IG+ +TY+H GKQY+ I SG+GGW G+GL   L DP AGLGAVG +  L+ YT +GG + 
Sbjct  535  IGNVMTYEHGGKQYVGILSGIGGWAGIGLAAGLTDPNAGLGAVGGYAALSDYTALGGQLT  594

Query  598  VFSL  601
            VF L
Sbjct  595  VFKL  598


&gt;<input name="getSeqGi" value="27381324" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for NP_772853" href="http://www.ncbi.nlm.nih.gov/protein/27381324?report=genbank&amp;log$=protalign&amp;blast_rank=61&amp;RID=CJ3JAY4J013">ref|NP_772853.1|</a><a name="27381324"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=27381324[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=61"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to NP_772853.1" border="0" height="16" width="16"></a> methanol dehydrogenase large subunit-like protein [Bradyrhizobium 
japonicum USDA 110]
 <a title="Show report for BAC51478" href="http://www.ncbi.nlm.nih.gov/protein/27354491?report=genbank&amp;log$=protalign&amp;blast_rank=61&amp;RID=CJ3JAY4J013">dbj|BAC51478.1|</a><a name="27354491"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=27354491[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=61"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to BAC51478.1" border="0" height="16" width="16"></a> methanol dehydrogenase large subunit-like protein [Bradyrhizobium 
japonicum USDA 110]
Length=602

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=1053459&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=61">GENE ID: 1053459 mxaF'</a> | methanol dehydrogenase large subunit-like protein
[Bradyrhizobium japonicum USDA 110] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  632 bits (1631),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 310/599 (52%), Positives = 416/599 (69%), Gaps = 17/599 (3%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            + L  AA LA  S  AN EL ++S++ ++WVM   DY+ T +S+L +IN+ NV  L+VAW
Sbjct  8    TYLGSAAALAVGSASANDELIKMSQNPKDWVMPAGDYANTRYSKLNQINAQNVGKLQVAW  67

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            T STG L GHEG PL++  +MY+HTPFPN VYA+DL++  K++W+Y+PKQ+P    V CC
Sbjct  68   TFSTGVLRGHEGGPLIIGNMMYVHTPFPNKVYAIDLSNENKIVWKYEPKQDPNVIPVMCC  127

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            D VNRGL+Y      G  KI L+Q D ++VAL+AKTG+  W   N D + G T T A  V
Sbjct  128  DTVNRGLSY------GDGKIILHQADTNLVALDAKTGQVAWSATNGDPSKGQTGTSAALV  181

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
            VKDKVLVG +G E GV+ +VTAY++K GKQ WRA++ GPD+ + +D              
Sbjct  182  VKDKVLVGISGGEFGVQCHVTAYDLKSGKQVWRAFSEGPDDQIKVDPAKTTSLGKPVGAD  241

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
              L TW+GD WKIGGG  WGW +YDP L+++YYGSGNP+ WN   RPGDNKW+MTI+ RD
Sbjct  242  SSLKTWQGDQWKIGGGCTWGWMSYDPALNLVYYGSGNPSTWNPKQRPGDNKWSMTIFARD  301

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGAL  372
            ADTG AK+ YQ TPHDEWDY GVN M LS+Q+++G+   LLTH DRNGL YT++RE+G L
Sbjct  302  ADTGMAKWVYQMTPHDEWDYDGVNEMILSDQQINGQARKLLTHFDRNGLGYTMDRESGEL  361

Query  373  VNAFKIDDTVNWVKKVDLKTGLP------IRDPEYSTRM--DHNAKGICPSAMGYHNQGI  424
            + A K D  VNW   VD+    P      + D   + +   DHN KGICP+A+G  ++  
Sbjct  362  LVAEKYDPKVNWTSGVDMDKNSPTYGRPKVLDAASTDKAGEDHNVKGICPAALGTKDEQP  421

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG--MLGQVKAMNAV  482
             +Y PD +LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P+G   +G   A +  
Sbjct  422  AAYSPDTQLFYVPTNHVCMDYEPFKVSYTAGQPYVGATLSMYP-PQGESHMGNFIAWDGK  480

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            TGK+ W   E+F+VW G LATAG +VFYGTL+G++KA D ++G+  ++F+ PSG+IG+  
Sbjct  481  TGKIVWSNKEQFSVWSGALATAGGVVFYGTLEGYLKAVDAKSGKELYKFKTPSGIIGNVT  540

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY++ GKQY+A+ SGVGGW G+GL   L DPTAGLGAVG +  L++YT +GG++ VFSL
Sbjct  541  TYENGGKQYVAVLSGVGGWAGIGLAAGLTDPTAGLGAVGGYAALSNYTALGGTLTVFSL  599


&gt;<input name="getSeqGi" value="240139319" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_002963794" href="http://www.ncbi.nlm.nih.gov/protein/240139319?report=genbank&amp;log$=protalign&amp;blast_rank=62&amp;RID=CJ3JAY4J013">ref|YP_002963794.1|</a><a name="240139319"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=240139319[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=62"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002963794.1" border="0" height="16" width="16"></a> XoxF [Methylobacterium extorquens AM1]
 <a title="Show report for ACS40517" href="http://www.ncbi.nlm.nih.gov/protein/240009291?report=genbank&amp;log$=protalign&amp;blast_rank=62&amp;RID=CJ3JAY4J013">gb|ACS40517.1|</a><a name="240009291"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=240009291[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=62"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACS40517.1" border="0" height="16" width="16"></a> XoxF [Methylobacterium extorquens AM1]
Length=599

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=7992648&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=62">GENE ID: 7992648 xoxF</a> | Encodes PQQ-linked dehydrogenase of unknown specificity
[Methylobacterium extorquens AM1] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  632 bits (1629),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/606 (51%), Positives = 415/606 (68%), Gaps = 32/606 (5%)

Query  14   MLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWT  73
            +L +   L      AN ++ + ++D    V+QT DY+ T +S+L +IN+ NVKNL+VAWT
Sbjct  6    LLGLMLALGTTGALANEDVLKRTQDPNQQVLQTLDYANTRYSKLDQINASNVKNLQVAWT  65

Query  74   LSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCD  133
             STG L GHEG+PLVV  IMY+HTPFPN VYA+DLN+  K+LW+Y+PKQ+P+   V CCD
Sbjct  66   FSTGVLRGHEGSPLVVGDIMYVHTPFPNIVYALDLNNDSKILWKYEPKQDPSVIPVMCCD  125

Query  134  VVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVV  193
             VNRGLAY          I L+Q D  +V+L+AKTG+  W ++N D  +G T T     V
Sbjct  126  TVNRGLAYADGA------IILHQADTTLVSLDAKTGKVNWSVKNGDSKVGETNTATVLPV  179

Query  194  KDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLD--------KDFNKDN  245
            KDK++VG +GAE G+RG++TAY+ K GK+ WRAY+ GPD+++L+D        K   KD+
Sbjct  180  KDKIIVGISGAEYGIRGHMTAYDAKTGKRVWRAYSVGPDDEMLVDPEKTTSLGKPIGKDS  239

Query  246  PHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWT  305
                     L TWEGD WK GGG  WGWY+YDPKLD+ YYG+ NP+ WN   RPGDNKWT
Sbjct  240  --------SLKTWEGDQWKTGGGATWGWYSYDPKLDLFYYGTANPSTWNPKQRPGDNKWT  291

Query  306  MTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTL  365
            M I+ R+ DTG+AK+ YQ TPHDEWDY G+N M L++Q+VDGK  PLLTH DRNG  YTL
Sbjct  292  MAIFARNPDTGQAKWIYQMTPHDEWDYDGINEMILTDQKVDGKERPLLTHFDRNGFAYTL  351

Query  366  NRETGALVNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAM  417
            +R  G ++ A K D  VNW  KVDL       G P+   +YST     D N+KGICP+A+
Sbjct  352  DRANGEVLVAEKFDPVVNWASKVDLDKGSKNYGRPLVVSKYSTDQNGEDVNSKGICPAAL  411

Query  418  GYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGM--LGQ  475
            G  +Q   ++ P  +LF++  NH+CMD+EPF + Y  GQ +VGATL+MYP P G   +G 
Sbjct  412  GTKDQQPAAFSPKTQLFYVPTNHVCMDYEPFKVTYTPGQPYVGATLSMYPAPGGHGGMGN  471

Query  476  VKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPS  535
              A + ++GK++W  PE+F+VW G LATAGD+VFYGTL+G++KA D++TG+  ++F+  S
Sbjct  472  FIAWDNISGKIKWSNPEQFSVWSGALATAGDVVFYGTLEGYLKAVDSKTGKELYKFKTAS  531

Query  536  GVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGS  595
            GVIG+ +TY H GKQY+ + SGVGGW G+GL   L DP AGLGAVG +  L+ YT +GG 
Sbjct  532  GVIGNVMTYTHKGKQYVGVLSGVGGWAGIGLAAGLTDPNAGLGAVGGYAALSQYTNLGGQ  591

Query  596  VFVFSL  601
            + VF+L
Sbjct  592  LTVFAL  597


&gt;<input name="getSeqGi" value="340027251" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08663314" href="http://www.ncbi.nlm.nih.gov/protein/340027251?report=genbank&amp;log$=protalign&amp;blast_rank=63&amp;RID=CJ3JAY4J013">ref|ZP_08663314.1|</a><a name="340027251"></a>  Pyrrolo-quinoline quinone [Paracoccus sp. TRP]
Length=600

 Score =  631 bits (1627),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 318/609 (52%), Positives = 417/609 (68%), Gaps = 28/609 (5%)

Query  6    LASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNV  65
            + S C   +L+    LA  S      L  ++K ++ W +QT DY+ T +S L +IN  NV
Sbjct  5    MNSACLALLLSGVPALANDSV-----LAEIAKPEQ-WAIQTGDYANTRYSTLDKINKDNV  58

Query  66   KNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPA  125
            K+L+VAWT STG L GHEG+PLV+  IMY+HTPFPNNVYA+DLND  K+LW+Y+P+Q+P 
Sbjct  59   KDLRVAWTFSTGVLRGHEGSPLVIGDIMYVHTPFPNNVYALDLNDNGKILWRYQPQQDPN  118

Query  126  ARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGST  185
              AV CCD VNRG+AY          I L+Q D  +VAL+AKTGE  W ++  D A+G T
Sbjct  119  VIAVMCCDTVNRGVAYADG------LILLHQADTTLVALDAKTGEVKWSVKTGDPAIGET  172

Query  186  LTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDN  245
             T     VKDKV+VG +G E GVRG VTAY++ DGK+ W+A++TGPDE+LL+D +     
Sbjct  173  NTATVMPVKDKVIVGVSGGEYGVRGRVTAYSLADGKEVWKAWSTGPDEELLVDPE---KT  229

Query  246  PHYGQ---FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDN  302
             H G+       LS+WEGD WKIGGGT WGWY+YDP+L++IYYG+GNP+ WN   RPGDN
Sbjct  230  THLGKPVGKDSSLSSWEGDQWKIGGGTTWGWYSYDPELNLIYYGTGNPSTWNPAQRPGDN  289

Query  303  KWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLV  362
            KW+MTI  RDADTG A++ YQ TPHDEWDY GVN M L+ Q +DG+   LLTH DRNGL 
Sbjct  290  KWSMTIMARDADTGVARWFYQMTPHDEWDYDGVNEMILTNQTIDGQERKLLTHFDRNGLA  349

Query  363  YTLNRETGALVNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICP  414
            YTL+RE+G L+ A K D  VNW   VD+       G P    EYST     D N  G+CP
Sbjct  350  YTLDRESGELLVAEKYDPAVNWTTGVDMDPNSETYGRPAVVAEYSTDQNGEDTNTTGVCP  409

Query  415  SAMGYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GM  472
            +A+G  +Q   ++ P   LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P   G 
Sbjct  410  AALGTKDQQPAAFSPKTNLFYVPTNHVCMDYEPFRVAYSAGQPYVGATLSMYPAPNSHGG  469

Query  473  LGQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQ  532
            +G   A + V G+++W +PE+F+VW G LATAG++VFYGTL+G++KA D  TG+  ++F+
Sbjct  470  MGNFIAWDNVKGEIKWSIPEQFSVWSGALATAGNVVFYGTLEGYLKAVDAETGDELYKFK  529

Query  533  LPSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQM  592
             PSGVIG+ +TY+H GKQYI + SGVGGW G+GL   L +P  GLGAVG +  L+ YT++
Sbjct  530  TPSGVIGNIMTYEHGGKQYIGVLSGVGGWAGIGLAAGLTNPNDGLGAVGGYASLSQYTEL  589

Query  593  GGSVFVFSL  601
            GG + VF L
Sbjct  590  GGQLTVFEL  598


&gt;<input name="getSeqGi" value="146277982" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001168141" href="http://www.ncbi.nlm.nih.gov/protein/146277982?report=genbank&amp;log$=protalign&amp;blast_rank=64&amp;RID=CJ3JAY4J013">ref|YP_001168141.1|</a><a name="146277982"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=146277982[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=64"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001168141.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodobacter sphaeroides ATCC 17025]
 <a title="Show report for ABP70836" href="http://www.ncbi.nlm.nih.gov/protein/145556223?report=genbank&amp;log$=protalign&amp;blast_rank=64&amp;RID=CJ3JAY4J013">gb|ABP70836.1|</a><a name="145556223"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=145556223[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=64"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABP70836.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodobacter sphaeroides ATCC 17025]
Length=600

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=5082420&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=64">GENE ID: 5082420 Rsph17025_1945</a> | Pyrrolo-quinoline quinone
[Rhodobacter sphaeroides ATCC 17025]

 Score =  630 bits (1626),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/600 (52%), Positives = 413/600 (69%), Gaps = 22/600 (4%)

Query  15   LAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTL  74
            LA   +L++   +AN  + +   D   W +QT DY+ T +S L +IN  NV  L+VAWT 
Sbjct  8    LAATLLLSSAPVYANDSVMQAIGDSTQWAIQTGDYANTRYSELDQINRENVGKLQVAWTF  67

Query  75   STGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDV  134
            STG L GHEG+PLV+DGIMY+HTPFPNNVYA+DLN+  ++LW+Y+P+QNP    V CCD 
Sbjct  68   STGVLRGHEGSPLVIDGIMYVHTPFPNNVYALDLNNEGRILWRYEPQQNPDVVGVMCCDT  127

Query  135  VNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVK  194
            VNRG+AY          IFL+Q D  IVAL+AK+GE  W + N D   G T T     VK
Sbjct  128  VNRGVAYADG------MIFLHQADTTIVALDAKSGEVKWSVVNGDPTKGETNTATVLPVK  181

Query  195  DKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF---  251
            DK+LVG +G E GVRG++TAY+++ G+Q WRA++TGPDE++L+D +      H G+    
Sbjct  182  DKILVGISGGEFGVRGHLTAYDMQTGEQVWRAFSTGPDEEMLVDPE---QTTHLGKPIGP  238

Query  252  GLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGR  311
               L +WEGD W+IGGGT WGWY+YDP L+++YYG+GNP+ WN + RPGDNKW+MTI  R
Sbjct  239  NSSLESWEGDQWQIGGGTTWGWYSYDPDLNLVYYGTGNPSTWNPSQRPGDNKWSMTIMAR  298

Query  312  DADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGA  371
            D DTG AK+ YQKTPHDEWDY GVN   L +QE+DG++  LL + DRNG  YTL+RETG 
Sbjct  299  DVDTGMAKWFYQKTPHDEWDYDGVNENILVDQEIDGQMRKLLVNLDRNGFGYTLDRETGE  358

Query  372  LVNAFKIDDTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQG  423
            L+ A K D  VNW  +V +     + G P    EYST     D N  G+CP+A+G  +Q 
Sbjct  359  LLVAEKYDPAVNWATEVVMDPESDQYGRPQVVAEYSTAQNGEDTNTTGVCPAALGSKDQQ  418

Query  424  IESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNA  481
              ++ P   LF++  NH+CMD+EP+ + Y AGQ +VGATL+MYP P   G +G   A +A
Sbjct  419  PAAFSPKTGLFYVPTNHVCMDYEPYRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDA  478

Query  482  VTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHP  541
              G+++W +PE+F+VW G LATAGD+VFYGTL+G +KA D  TGEL ++F+ PSGVIG+ 
Sbjct  479  TKGEIKWSLPEQFSVWSGALATAGDVVFYGTLEGHLKAIDAETGELLYRFKTPSGVIGNV  538

Query  542  ITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            +TY+ NGKQYI I SGVGGW G+GL   L +P  GLGAVG +  L+ YT++GG + VF++
Sbjct  539  MTYELNGKQYIGILSGVGGWAGIGLAAGLTNPNEGLGAVGGYAALSDYTELGGQLTVFAV  598


&gt;<input name="getSeqGi" value="90420383" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_01228291" href="http://www.ncbi.nlm.nih.gov/protein/90420383?report=genbank&amp;log$=protalign&amp;blast_rank=65&amp;RID=CJ3JAY4J013">ref|ZP_01228291.1|</a><a name="90420383"></a>  methanol dehydrogenase, subunit 1 [Aurantimonas manganoxydans 
SI85-9A1]
 <a title="Show report for EAS49467" href="http://www.ncbi.nlm.nih.gov/protein/90335717?report=genbank&amp;log$=protalign&amp;blast_rank=65&amp;RID=CJ3JAY4J013">gb|EAS49467.1|</a><a name="90335717"></a>  methanol dehydrogenase, subunit 1 [Aurantimonas manganoxydans 
SI85-9A1]
Length=615

 Score =  630 bits (1626),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 308/588 (52%), Positives = 406/588 (69%), Gaps = 11/588 (2%)

Query  25   STHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEG  84
            +  AN +L  L  D   WVM T +Y+   +S L +IN  NV ++  AWT STG L GHEG
Sbjct  21   TASANDKLQELQGDAAQWVMPTGNYANQRYSTLDKINKDNVGDMVPAWTFSTGVLRGHEG  80

Query  85   APLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPA  144
             PLVV   MY+HTPFPN VYA+DL+D   ++W+Y+PKQ+P    V CCD VNRG+AY PA
Sbjct  81   NPLVVGDTMYVHTPFPNMVYALDLSDDGSIMWKYEPKQDPNVIPVMCCDTVNRGVAYAPA  140

Query  145  -GEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAG  203
             G+ G   + L+Q D  +VAL+AKTGE++W ++N D + G T T AP V KDKVL+G +G
Sbjct  141  QGDGGKDLVILHQADTTVVALDAKTGEQVWSVQNGDASKGETGTAAPMVFKDKVLIGISG  200

Query  204  AELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAW  263
             E GVRG VTAYN+ DG Q WRAY+TGPD+++L D +              L++WEGD W
Sbjct  201  GEFGVRGSVTAYNLSDGTQAWRAYSTGPDDEMLFDPEKTTALGEPVGADSSLNSWEGDQW  260

Query  264  KIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQ  323
            +IGGGT WGW+AYDP L++IYYG+GNP+ WN   RPGDNKW+MTI  RDADTG AK+ YQ
Sbjct  261  QIGGGTTWGWFAYDPDLNLIYYGTGNPSTWNPAQRPGDNKWSMTIMARDADTGMAKWVYQ  320

Query  324  KTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVN  383
             TPHDEWD+ GVN M L++ +VDG     L H DRNG  YTL+RETG L+ A K D  VN
Sbjct  321  MTPHDEWDFDGVNEMILADIDVDGSERKALVHFDRNGFAYTLDRETGELLVAKKYDPAVN  380

Query  384  WVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFF  435
            W  +V +     + G P    EYST     D N+ GICP+A+G  +Q   +Y P+ KLF+
Sbjct  381  WATEVVMDKESDQYGRPQVVAEYSTEQNGEDVNSTGICPAALGTKDQQPAAYSPETKLFY  440

Query  436  MGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTGKMEWEVPEK  493
            +  NH+CMD+EPF + Y AGQ +VGATL+MYP P   G +G   A +A  G++ W +PE+
Sbjct  441  VPTNHVCMDYEPFRVAYTAGQPYVGATLSMYPAPNSHGGMGNFIAWDAGKGEIVWSLPEQ  500

Query  494  FAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIA  553
            F+VW G LATAGD+VFYGTL+G++KA + +TGE  ++F+ PSG+IG+ +TY+++GKQY+ 
Sbjct  501  FSVWSGALATAGDIVFYGTLEGYLKAVNAQTGEELYKFKTPSGIIGNVMTYENDGKQYVG  560

Query  554  IYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            I SG+GGW G+GL   L DP AGLGAVG +  L+ YT +GG + VF++
Sbjct  561  ILSGIGGWAGIGLAAGLTDPNAGLGAVGGYAALSKYTALGGQLTVFTV  608


&gt;<input name="getSeqGi" value="328542636" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_004302745" href="http://www.ncbi.nlm.nih.gov/protein/328542636?report=genbank&amp;log$=protalign&amp;blast_rank=66&amp;RID=CJ3JAY4J013">ref|YP_004302745.1|</a><a name="328542636"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=328542636[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=66"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004302745.1" border="0" height="16" width="16"></a> methanol dehydrogenase large subunit-like protein [Polymorphum 
gilvum SL003B-26A1]
 <a title="Show report for ADZ69445" href="http://www.ncbi.nlm.nih.gov/protein/326412382?report=genbank&amp;log$=protalign&amp;blast_rank=66&amp;RID=CJ3JAY4J013">gb|ADZ69445.1|</a><a name="326412382"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=326412382[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=66"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADZ69445.1" border="0" height="16" width="16"></a> Methanol dehydrogenase large subunit-like protein [Polymorphum 
gilvum SL003B-26A1]
Length=600

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=10418355&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=66">GENE ID: 10418355 SL003B_1016</a> | methanol dehydrogenase large subunit-like
protein [Polymorphum gilvum SL003B-26A1] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  630 bits (1624),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/603 (52%), Positives = 417/603 (69%), Gaps = 24/603 (4%)

Query  14   MLAMAAVLAAQS--THANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVA  71
            +L  AA L + S    AN  + +   D + WV+QT DY+ T FS+L EIN  NVK+L+VA
Sbjct  5    ILCAAAALVSTSYAALANDSVLQGQSDPKQWVLQTGDYANTRFSQLDEINKDNVKDLQVA  64

Query  72   WTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVAC  131
            WT STG L GHEG+PLVV  +MY+HTPFPNNV+A+DLN+  K+LW+Y+PKQ+P   AV C
Sbjct  65   WTFSTGVLRGHEGSPLVVGDVMYVHTPFPNNVFALDLNNDGKILWRYEPKQDPDVIAVMC  124

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD V RGLAY         K+FL+Q D  +VAL+AK+G  +W + N D ++G T T    
Sbjct  125  CDTVYRGLAYADG------KLFLHQADTTVVALDAKSGAVLWSVVNGDPSIGETNTATVL  178

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ-  250
             VKDKV+VG +G E GVRG VTAYN+  G++ WRAY+ GPDED+L+D +      H G+ 
Sbjct  179  PVKDKVIVGISGGEFGVRGSVTAYNMNTGERVWRAYSMGPDEDILVDPE---KTTHLGKP  235

Query  251  --FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTI  308
                 GL+TWEGD WKIGGGT WGWY+YDP+ D++YYG+GNP+ WN + RPGDN+W+MTI
Sbjct  236  VGKDSGLNTWEGDQWKIGGGTTWGWYSYDPEADLVYYGTGNPSTWNPSQRPGDNRWSMTI  295

Query  309  WGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRE  368
              R+ DTG A + YQ TPHDEWDY G+N M LS+QE++G++  +L H DRNG  YT++R 
Sbjct  296  MARNPDTGMASWFYQMTPHDEWDYDGINEMILSDQEINGEMRKVLVHFDRNGFAYTMDRL  355

Query  369  TGALVNAFKIDDTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMGYH  420
            +G L+ A K D  VNW   V++     + G P    +YST     D N  G+CP+A+G  
Sbjct  356  SGELLVAEKYDPVVNWATHVEMDKNSDQYGRPQVVAQYSTAQNGEDVNTTGVCPAALGTK  415

Query  421  NQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKA  478
            +Q   ++ P   L ++  NH+CMD+EPF + Y AGQ +VGATL+MYP P   G +G   A
Sbjct  416  DQQPAAFSPRTGLHYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIA  475

Query  479  MNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVI  538
             +A  G++ W +PE+F+VW G LATAGD+VFYGTL+G++KA D +TGEL ++F+ PSG+I
Sbjct  476  WDATKGEIVWSLPEQFSVWSGALATAGDVVFYGTLEGYLKAVDAKTGELLYRFKTPSGII  535

Query  539  GHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFV  598
            G+ +TY+HNGKQY+ I SGVGGW G+GL   L +P  GLGAVG +  L+ YT +GG + V
Sbjct  536  GNVMTYEHNGKQYVGILSGVGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTSLGGQLTV  595

Query  599  FSL  601
            F+L
Sbjct  596  FAL  598


&gt;<input name="getSeqGi" value="354956083" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for BAL08762" href="http://www.ncbi.nlm.nih.gov/protein/354956083?report=genbank&amp;log$=protalign&amp;blast_rank=67&amp;RID=CJ3JAY4J013">dbj|BAL08762.1|</a><a name="354956083"></a>  methanol dehydrogenase large subunit [Bradyrhizobium japonicum 
USDA 6]
Length=603

 Score =  629 bits (1622),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/599 (52%), Positives = 417/599 (70%), Gaps = 17/599 (3%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            + L  AA+LAA S  AN EL ++S++ ++WVM   DY+ T +S+L +IN+ NV  L+VAW
Sbjct  8    TYLGSAAMLAAGSASANDELIKMSQNPKDWVMPAGDYANTRYSKLNQINAQNVGKLQVAW  67

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            T STG L GHEG PL++  +MY+HTPFPN VYA+DL++  K++W+Y+PKQ+P    V CC
Sbjct  68   TFSTGVLRGHEGGPLIIGNMMYVHTPFPNKVYAIDLSNENKIVWKYEPKQDPNVIPVMCC  127

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            D VNRGL+Y      G  KI L+Q D ++VAL+AKTG+  W   N + A G T T A  V
Sbjct  128  DTVNRGLSY------GDGKIILHQADTNLVALDAKTGKVEWSATNGNPAKGETGTSAALV  181

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
            VKDKVLVG +G E GV+ +VTAY++K GKQ WRA++ GPD+ + +D              
Sbjct  182  VKDKVLVGISGGEFGVQCHVTAYDLKSGKQVWRAFSEGPDDQIKVDPAKTTSLGKPVGAD  241

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
              L TW+GD WKIGGG  WGW ++DP L+++YYGSGNP+ WN   RPGDNKW+MTI+ RD
Sbjct  242  SSLKTWQGDQWKIGGGCTWGWMSFDPALNLVYYGSGNPSTWNPKQRPGDNKWSMTIFARD  301

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGAL  372
            ADTG AK+ YQ TPHDEWDY GVN M LS+Q+++G+   LLTH DRNGL YT++RE G L
Sbjct  302  ADTGMAKWVYQMTPHDEWDYDGVNEMILSDQQINGQPRKLLTHFDRNGLAYTMDRENGEL  361

Query  373  VNAFKIDDTVNWVKKVDLKT-----GLP-IRDPEYSTRM--DHNAKGICPSAMGYHNQGI  424
            + A K D  VNW   VD+       G P + D   + +   DHN KGICP+A+G  ++  
Sbjct  362  LVAEKYDPKVNWTSGVDMDKNSATYGRPKVLDAASTDKAGEDHNVKGICPAALGTKDEQP  421

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG--MLGQVKAMNAV  482
             +Y PD +LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P G   +G   A +  
Sbjct  422  AAYSPDTQLFYVPTNHVCMDYEPFKVSYTAGQPYVGATLSMYP-PAGETHMGNFIAWDGK  480

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            TGK+ W   E+F+VW G LATAG +VFYGTL+G++KA D ++G+  ++F+ PSG+IG+  
Sbjct  481  TGKIVWSNKEQFSVWSGALATAGGVVFYGTLEGYLKAVDAKSGKELYKFKTPSGIIGNVT  540

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY++ GKQY+A+ SGVGGW G+GL   L DPTAGLGAVG +  L++YT +GG++ VFSL
Sbjct  541  TYENGGKQYVAVLSGVGGWAGIGLAAGLTDPTAGLGAVGGYAALSNYTALGGTLTVFSL  599


&gt;<input name="getSeqGi" value="262275102" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_06052913" href="http://www.ncbi.nlm.nih.gov/protein/262275102?report=genbank&amp;log$=protalign&amp;blast_rank=68&amp;RID=CJ3JAY4J013">ref|ZP_06052913.1|</a><a name="262275102"></a>  methanol dehydrogenase large subunit protein [Grimontia hollisae 
CIP 101886]
 <a title="Show report for EEY72979" href="http://www.ncbi.nlm.nih.gov/protein/262221665?report=genbank&amp;log$=protalign&amp;blast_rank=68&amp;RID=CJ3JAY4J013">gb|EEY72979.1|</a><a name="262221665"></a>  methanol dehydrogenase large subunit protein [Grimontia hollisae 
CIP 101886]
Length=602

 Score =  629 bits (1622),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 316/595 (53%), Positives = 416/595 (70%), Gaps = 15/595 (3%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            ++L++A +  A S  AN EL +L +D   WVM   DYS T +S L +IN+ NVK+L+VAW
Sbjct  15   AILSLALLFPATS-QANDELIKLQEDPNQWVMWGGDYSGTRYSPLKQINAKNVKDLQVAW  73

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKML-WQYKPKQNPAARAVAC  131
            T STG L GHEG PLV+   MYIHTPFPN V+A+DLN  RK L W+Y+PKQ+ +  AV C
Sbjct  74   TFSTGVLRGHEGGPLVLGDTMYIHTPFPNKVFAIDLN--RKALKWEYEPKQDSSVIAVMC  131

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD VNRGLAY         KIFL Q D  +VAL+ KTG+ +WK+ N D  +G++ T AP 
Sbjct  132  CDTVNRGLAYADG------KIFLQQADTTLVALDQKTGKVVWKVVNGDPKVGASNTNAPL  185

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            +VKDK++ G +G E GVRGY+TAYNIKDG   WRAY+TGPDE++L+D +   +       
Sbjct  186  IVKDKIITGVSGGEFGVRGYLTAYNIKDGSLAWRAYSTGPDEEMLVDPEKTTELLKPIGK  245

Query  252  GLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGR  311
               L TWEGD WKIGGGT WGWY YDP+L++IYYG+GNP+ WN + RPGDNK++MTI  R
Sbjct  246  DASLKTWEGDQWKIGGGTTWGWYTYDPELNLIYYGTGNPSTWNPSQRPGDNKYSMTIMAR  305

Query  312  DADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGA  371
            DADTG AK+ YQ TPHDEWDY GVN M L +++  GK   LL H DRNG  YTL+R TG 
Sbjct  306  DADTGMAKWLYQMTPHDEWDYDGVNEMILVDKKFKGKDRKLLVHFDRNGFGYTLDRVTGE  365

Query  372  LVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYD  428
            L+ A K D  VNW   VD++TG P    +YST     D + KG+CP+A+G  +Q   +Y 
Sbjct  366  LLVAEKFDPAVNWATHVDMETGRPQVVAKYSTDQNGEDVDTKGVCPAALGSKDQQPATYS  425

Query  429  PDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTGKM  486
            P   LF++  NH+CM++EPF + Y AGQ +VGATL+M+P P   G LG   A +A  G++
Sbjct  426  PRTGLFYVPTNHVCMNYEPFEVSYAAGQPYVGATLSMFPAPDSHGGLGNFIAWDAEKGEI  485

Query  487  EWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQH  546
             W +PE F+VW G LAT G +VFYGTL+G++KA D +TG+  ++F+ PSG+IG+  TY +
Sbjct  486  VWSLPEPFSVWSGALATNGGVVFYGTLEGYLKAIDEKTGKELYRFKTPSGIIGNVNTYMY  545

Query  547  NGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            +GKQY+A+ SG+GGW G+G+   L+  T GLGAVGA+R+L+ YTQ+GG + VF+L
Sbjct  546  DGKQYVAVLSGLGGWAGIGMAAGLEGDTEGLGAVGAYRKLSDYTQLGGVLTVFAL  600


&gt;<input name="getSeqGi" value="16263921" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for NP_436713" href="http://www.ncbi.nlm.nih.gov/protein/16263921?report=genbank&amp;log$=protalign&amp;blast_rank=69&amp;RID=CJ3JAY4J013">ref|NP_436713.1|</a><a name="16263921"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=16263921[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=69"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to NP_436713.1" border="0" height="16" width="16"></a> methanol dehydrogenase, large subunit [Sinorhizobium meliloti 
1021]
 <a title="Show report for YP_004556573" href="http://www.ncbi.nlm.nih.gov/protein/334319944?report=genbank&amp;log$=protalign&amp;blast_rank=69&amp;RID=CJ3JAY4J013">ref|YP_004556573.1|</a><a name="334319944"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=334319944[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=69"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_004556573.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase methanol/ethanol family protein [Sinorhizobium 
meliloti AK83]
 <a title="Show report for CAC48573" href="http://www.ncbi.nlm.nih.gov/protein/15140045?report=genbank&amp;log$=protalign&amp;blast_rank=69&amp;RID=CJ3JAY4J013">emb|CAC48573.1|</a><a name="15140045"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=15140045[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=69"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to CAC48573.1" border="0" height="16" width="16"></a> putative methanol dehydrogenase protein, large subunit [Sinorhizobium 
meliloti 1021]
 <a title="Show report for AEG08772" href="http://www.ncbi.nlm.nih.gov/protein/333816105?report=genbank&amp;log$=protalign&amp;blast_rank=69&amp;RID=CJ3JAY4J013">gb|AEG08772.1|</a><a name="333816105"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Sinorhizobium 
meliloti BL225C]
 <a title="Show report for AEG55693" href="http://www.ncbi.nlm.nih.gov/protein/334097683?report=genbank&amp;log$=protalign&amp;blast_rank=69&amp;RID=CJ3JAY4J013">gb|AEG55693.1|</a><a name="334097683"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=334097683[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=69"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to AEG55693.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Sinorhizobium 
meliloti AK83]
 <a title="Show report for AEH84262" href="http://www.ncbi.nlm.nih.gov/protein/336038332?report=genbank&amp;log$=protalign&amp;blast_rank=69&amp;RID=CJ3JAY4J013">gb|AEH84262.1|</a><a name="336038332"></a>  putative methanol dehydrogenase protein, large subunit [Sinorhizobium 
meliloti SM11]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=1236504&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=69">GENE ID: 1236504 SM_b20173</a> | methanol dehydrogenase, large subunit
[Sinorhizobium meliloti 1021] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  627 bits (1618),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 316/606 (52%), Positives = 415/606 (68%), Gaps = 28/606 (5%)

Query  14   MLAMAAVLA----AQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
            +L M A+++    AQ   AN EL +L  D   W +QT DY+   +S+L +IN  NV  L+
Sbjct  4    LLTMLAIMSIGGGAQVAFANDELQKLIDDPNQWAIQTGDYANLRYSKLDQINKDNVGKLQ  63

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
            VAWT STG L GHEG+PLV+  +MY+HTPFPN VYA+DL+   +++W+Y+PKQ+P    V
Sbjct  64   VAWTFSTGVLRGHEGSPLVIGDLMYVHTPFPNTVYALDLSKDGQIVWKYEPKQDPNVIPV  123

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
             CCD VNRG+AY         KIFL+Q D  +VAL+AKTG+ IW ++N D   G T T  
Sbjct  124  MCCDTVNRGVAYADN------KIFLHQADTTVVALDAKTGKVIWSVKNGDATKGETNTAT  177

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
               VKDK+LVG +G E GVRG+VTAY++ DGK  WR Y+ GPD D L+D +      H G
Sbjct  178  VMPVKDKILVGISGGEFGVRGHVTAYSMADGKVLWRGYSMGPDSDTLIDPE---KTTHLG  234

Query  250  Q---FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTM  306
            +      GL+TWEGD WKIGGGT WGWY+YDP+ +++YYG+GNP+ WN T RPGDN+W+M
Sbjct  235  KPVGKDSGLTTWEGDQWKIGGGTTWGWYSYDPEENLVYYGTGNPSTWNPTQRPGDNRWSM  294

Query  307  TIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLN  366
            TI+ RD DTG AK+ YQ TPHDEWDY GVN M L+EQ++DGK   LLTH DRNG  YT++
Sbjct  295  TIFARDVDTGMAKWLYQMTPHDEWDYDGVNEMILTEQQIDGKDRKLLTHFDRNGFGYTMD  354

Query  367  RETGALVNAFKIDDTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMG  418
            R TG L+ A K D TVNW  +V +     K G P    +YST     D N  G+CP+A+G
Sbjct  355  RVTGELLVAEKYDPTVNWATEVVMDPKSDKYGRPQVVAQYSTEQNGEDTNTTGVCPAALG  414

Query  419  YHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK---GMLGQ  475
              +Q   +Y P  +LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP PK   G +G 
Sbjct  415  TKDQQPAAYSPKTELFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYP-PKDSHGGMGN  473

Query  476  VKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPS  535
              A +   GK++W +PE F+VW G LATAGD+VFYGTL+G++KA D  TG+  ++F+ PS
Sbjct  474  FIAWDNKEGKIKWSLPEPFSVWSGALATAGDVVFYGTLEGYLKAVDAATGKELYRFKTPS  533

Query  536  GVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGS  595
            GVIG+ +TY   GKQY+A+ SGVGGW G+GL   L +PT GLGAVG +  L++YT +GG+
Sbjct  534  GVIGNVMTYAREGKQYVAVLSGVGGWAGIGLAAGLTNPTEGLGAVGGYSALSNYTALGGT  593

Query  596  VFVFSL  601
            + VF L
Sbjct  594  LTVFKL  599


&gt;<input name="getSeqGi" value="260429814" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_05783790" href="http://www.ncbi.nlm.nih.gov/protein/260429814?report=genbank&amp;log$=protalign&amp;blast_rank=70&amp;RID=CJ3JAY4J013">ref|ZP_05783790.1|</a><a name="260429814"></a>  methanol dehydrogenase subunit 1 [Citreicella sp. SE45]
 <a title="Show report for EEX12551" href="http://www.ncbi.nlm.nih.gov/protein/260419297?report=genbank&amp;log$=protalign&amp;blast_rank=70&amp;RID=CJ3JAY4J013">gb|EEX12551.1|</a><a name="260419297"></a>  methanol dehydrogenase subunit 1 [Citreicella sp. SE45]
Length=600

 Score =  627 bits (1617),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/601 (52%), Positives = 411/601 (68%), Gaps = 22/601 (4%)

Query  14   MLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWT  73
            M +  A+ AA    AN +L     +   W +QT DYS   +S L +IN  NV +L+VAWT
Sbjct  7    MTSGVALFAASMAMANDDLMAQMDNASQWAIQTGDYSNQRYSELDKINKDNVGDLQVAWT  66

Query  74   LSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCD  133
             STG L GHEG+PLVV   M++HTPFPN VYA+DLN+  K+ W+Y+PKQ+P    V CCD
Sbjct  67   FSTGVLRGHEGSPLVVGDTMFVHTPFPNIVYALDLNEQGKIKWRYEPKQDPNVIPVMCCD  126

Query  134  VVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVV  193
             VNRG+AY         KIFL+Q D  +VAL+A+TGE +W++ N D + G T T     V
Sbjct  127  TVNRGVAYADG------KIFLHQADTKVVALDAETGEVLWEVMNGDASKGETNTATVLPV  180

Query  194  KDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ---  250
            KDKV+VG +G E GVRG+VTAYN++ G+QEWRAY+ GPD D+L+D    ++  H G+   
Sbjct  181  KDKVIVGISGGEFGVRGHVTAYNMETGEQEWRAYSMGPDSDILMDP---ENTTHLGKPVG  237

Query  251  FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWG  310
               G +TWEGD W IGGGT WGWY+YDP+ D+IYYG+GNP+ WN   RPGDN+W+MT+  
Sbjct  238  ADSGTNTWEGDQWMIGGGTTWGWYSYDPEADLIYYGTGNPSTWNPAQRPGDNRWSMTVMA  297

Query  311  RDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETG  370
            RD D G AK+ YQ TPHDEWD+ GVN M L++QE+DG++  LLTH DRNGL YTL+R +G
Sbjct  298  RDPDDGMAKWVYQMTPHDEWDFDGVNEMILTDQEMDGEMRKLLTHFDRNGLAYTLDRISG  357

Query  371  ALVNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQ  422
             L+ A K D  VNW   VD+       G P    EYST     D N+ GICP+A+G  +Q
Sbjct  358  ELLVAEKYDPAVNWTTGVDMDPESETYGRPAVVAEYSTEQNGEDVNSTGICPAALGTKDQ  417

Query  423  GIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMN  480
               S+ P   LF++  NH+CMD+EPF + Y AGQ +VGATL MYP P   G +G   A +
Sbjct  418  QPASFSPKTGLFYVPTNHVCMDYEPFRVSYTAGQPYVGATLAMYPAPDSHGGMGNFIAWD  477

Query  481  AVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGH  540
             + G+++W +PE+F+VW G LATAGD+VFYGTL+G++KA D+ TG+  ++F+ PSG+IG+
Sbjct  478  NLAGEIKWSIPEQFSVWSGALATAGDVVFYGTLEGYLKAVDSETGDELYKFKTPSGIIGN  537

Query  541  PITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFS  600
             +TY+H+GKQYI I SGVGGW G+GL   L +P  GLGAVG +  L+ YT +GG + VF+
Sbjct  538  VMTYEHDGKQYIGILSGVGGWAGIGLAAGLTNPNDGLGAVGGYSALSDYTALGGQLTVFA  597

Query  601  L  601
            L
Sbjct  598  L  598


&gt;<input name="getSeqGi" value="338850202" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for AEJ28413" href="http://www.ncbi.nlm.nih.gov/protein/338850202?report=genbank&amp;log$=protalign&amp;blast_rank=71&amp;RID=CJ3JAY4J013">gb|AEJ28413.1|</a><a name="338850202"></a>  Methanol dehydrogenase large subunit protein [Paracoccus denitrificans 
SD1]
Length=596

 Score =  627 bits (1616),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 310/599 (52%), Positives = 406/599 (68%), Gaps = 22/599 (4%)

Query  16   AMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLS  75
             +A ++   +  AN  +       + W +QT DY+ T +S L +IN  NVK+L+VAWT S
Sbjct  5    CLALLMCGSAAMANESVLAEIAKPQQWAIQTGDYANTRYSTLDQINKDNVKDLRVAWTFS  64

Query  76   TGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVV  135
            TG L GHEG+PLV+  +MY+HTPFPNNV+A+DLND  K+LW+Y+P+Q+P   AV CCD V
Sbjct  65   TGVLRGHEGSPLVIGDVMYVHTPFPNNVFALDLNDNGKILWRYEPQQDPNVIAVMCCDTV  124

Query  136  NRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKD  195
            NRGLAY          I L+Q D  +VAL+AKTGE  W  +  D A+G TLT     VKD
Sbjct  125  NRGLAYADG------MILLSQADTTVVALDAKTGEAKWSAKVGDPAIGETLTATVMPVKD  178

Query  196  KVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ---FG  252
            KV+VG +G E GVRG +TA N+KDG   W+AY+TGPDE++L+D +      H G+     
Sbjct  179  KVMVGISGGEYGVRGRMTALNLKDGSVAWKAYSTGPDEEMLVDPE---KTTHLGKPIGKD  235

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
              L +WEGD WKIGGGT WGW++YDP L++IYYG+GNP+ WN   RPGDNKW+MTI  RD
Sbjct  236  SSLQSWEGDQWKIGGGTIWGWFSYDPDLNLIYYGTGNPSTWNPAQRPGDNKWSMTIMARD  295

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGAL  372
            ADTG AK+ YQ TPHDEWD+ GVN M L+ Q++DGK   LLTH DRNGL YT++RETG L
Sbjct  296  ADTGMAKWFYQMTPHDEWDFDGVNEMILTNQQIDGKDRKLLTHFDRNGLGYTMDRETGEL  355

Query  373  VNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            + A K D  VNW   VD+       G P    EYST     D N  G+CP+A+G  +Q  
Sbjct  356  LVAEKFDPVVNWTTGVDMDPNSETYGRPAVVAEYSTDQNGEDENTTGVCPAALGSKDQQP  415

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAV  482
             ++ P   LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P   G +G   A +  
Sbjct  416  AAFSPQTNLFYVPTNHVCMDYEPFRVAYTAGQPYVGATLSMYPAPNSHGGMGNFIAWDNT  475

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             G+++W +PE+F+VW G LATAG +VFYGTL+G++KA D  TG+  ++F+ PSG+IG+ +
Sbjct  476  KGEIKWSLPEQFSVWSGALATAGGVVFYGTLEGYLKAVDAETGKELYKFKTPSGIIGNVM  535

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY+H GKQYI I SGVGGW G+GL   L +P  GLGAVG +  L+ YT++GG + VF L
Sbjct  536  TYEHGGKQYIGILSGVGGWAGIGLAAGLTNPNEGLGAVGGYASLSQYTELGGQLTVFEL  594


&gt;<input name="getSeqGi" value="150376090" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001312686" href="http://www.ncbi.nlm.nih.gov/protein/150376090?report=genbank&amp;log$=protalign&amp;blast_rank=72&amp;RID=CJ3JAY4J013">ref|YP_001312686.1|</a><a name="150376090"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=150376090[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=72"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001312686.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Sinorhizobium medicae WSM419]
 <a title="Show report for ABR62753" href="http://www.ncbi.nlm.nih.gov/protein/150030637?report=genbank&amp;log$=protalign&amp;blast_rank=72&amp;RID=CJ3JAY4J013">gb|ABR62753.1|</a><a name="150030637"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=150030637[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=72"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABR62753.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Sinorhizobium medicae WSM419]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=5318524&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=72">GENE ID: 5318524 Smed_3943</a> | Pyrrolo-quinoline quinone
[Sinorhizobium medicae WSM419]

 Score =  627 bits (1617),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 316/606 (52%), Positives = 415/606 (68%), Gaps = 28/606 (5%)

Query  14   MLAMAAVLA----AQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
            +L M A ++    AQ   AN +L +L  D   W +QT DY+   +S+L +IN  NV  L+
Sbjct  4    LLTMLAFMSIGGGAQVAFANDDLQKLIDDPNQWAIQTGDYANLRYSKLDQINKDNVGKLQ  63

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
            VAWT STG L GHEG+PLV+  +MY+HTPFPN VYA+DL+   +++W+Y+PKQ+P    V
Sbjct  64   VAWTFSTGVLRGHEGSPLVIGDMMYVHTPFPNTVYALDLSKDGQIVWKYEPKQDPNVIPV  123

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
             CCD VNRG+AY         KIFL+Q D  +VAL+AKTG+  W ++N D   G T T  
Sbjct  124  MCCDTVNRGVAYADN------KIFLHQADTTVVALDAKTGKVAWSVKNGDATKGETNTAT  177

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
               VKDKVLVG +G E GVRG+VTAY+I DGK  WRAY+ GPD D L++ +      H G
Sbjct  178  VMPVKDKVLVGISGGEFGVRGHVTAYSIADGKLLWRAYSMGPDSDTLMNPE---KTTHLG  234

Query  250  Q---FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTM  306
            +      GL+TWEGD WKIGGGT WGWY+YDP+L+M+YYG+GNP+ WN T RPGDN+W+M
Sbjct  235  KPVGKDSGLTTWEGDQWKIGGGTTWGWYSYDPELNMVYYGTGNPSTWNPTQRPGDNRWSM  294

Query  307  TIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLN  366
            T++ RD DTG AK+ YQ TPHDEWDY GVN M L+EQ++DGK   LLTH DRNG  YT++
Sbjct  295  TVFARDVDTGEAKWVYQMTPHDEWDYDGVNEMILTEQQIDGKDRKLLTHFDRNGFGYTMD  354

Query  367  RETGALVNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMG  418
            R TG L+ A K D TVNW  +V + +     G P    +YST     D N  G+CP+A+G
Sbjct  355  RVTGELLVAEKYDPTVNWATEVVMDSKSEQFGRPQVVAQYSTEQNGEDTNTTGVCPAALG  414

Query  419  YHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK---GMLGQ  475
              +Q   +Y P  +LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP PK   G +G 
Sbjct  415  TKDQQPAAYSPKTELFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYP-PKDSHGGMGN  473

Query  476  VKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPS  535
              A +   GK++W +PE F+VW G LATAGD+VFYGTL+G++KA D  TG+  ++F+ PS
Sbjct  474  FIAWDNKEGKIKWSLPEPFSVWSGALATAGDVVFYGTLEGYLKAVDAATGKELYRFKTPS  533

Query  536  GVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGS  595
            GVIG+ +TY   GKQY+A+ SGVGGW G+GL   L +PT GLGAVG +  L++YT +GG+
Sbjct  534  GVIGNVMTYAREGKQYVAVLSGVGGWAGIGLAAGLTNPTEGLGAVGGYSALSNYTALGGT  593

Query  596  VFVFSL  601
            + VF L
Sbjct  594  LTVFKL  599


&gt;<input name="getSeqGi" value="217977751" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_002361898" href="http://www.ncbi.nlm.nih.gov/protein/217977751?report=genbank&amp;log$=protalign&amp;blast_rank=73&amp;RID=CJ3JAY4J013">ref|YP_002361898.1|</a><a name="217977751"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=217977751[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=73"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002361898.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Methylocella silvestris BL2]
 <a title="Show report for ACK50536" href="http://www.ncbi.nlm.nih.gov/protein/217503127?report=genbank&amp;log$=protalign&amp;blast_rank=73&amp;RID=CJ3JAY4J013">gb|ACK50536.1|</a><a name="217503127"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=217503127[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=73"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACK50536.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylocella 
silvestris BL2]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=7090944&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=73">GENE ID: 7090944 Msil_1587</a> | PQQ-dependent dehydrogenase
[Methylocella silvestris BL2] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  626 bits (1614),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 310/594 (52%), Positives = 407/594 (69%), Gaps = 17/594 (3%)

Query  18   AAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTG  77
            A+ L A    AN EL  L K+ +NW + T DYS   FS L +I + NVK+L   WT STG
Sbjct  12   ASALMANGAFANEELITLQKNAKNWALPTGDYSNHRFSELNQITNKNVKDLVPVWTFSTG  71

Query  78   TLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNR  137
             L GHEG PLV+  +MY  TPFPN VYA+DLN+  K+LW+Y+PKQ+P+   V CCD V R
Sbjct  72   VLRGHEGNPLVIGDVMYFSTPFPNIVYALDLNNDGKILWKYEPKQDPSVIPVMCCDTVTR  131

Query  138  GLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKV  197
            G+AY      G  KI L Q D  +VAL+AKTG+ +W ++N D A G T T AP V+KD V
Sbjct  132  GVAY------GDGKIILGQADTTLVALDAKTGQPVWSVKNGDPAKGETNTSAPQVIKDNV  185

Query  198  LVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLST  257
            ++G +G E GVRG VTAY++K GK+ WR Y+ GPD D L+D +             G +T
Sbjct  186  IIGISGGEFGVRGSVTAYDLKTGKKVWRGYSMGPDSDTLIDPEKTTALGKPVGANSGTNT  245

Query  258  WEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGR  317
            WEGD WKIGGGT WGW +YDP+L+++YYGSGNP+ WN   RPGDN+W+M++W RDAD+G+
Sbjct  246  WEGDQWKIGGGTTWGWISYDPELNLVYYGSGNPSTWNPVQRPGDNRWSMSVWARDADSGK  305

Query  318  AKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFK  377
             K+ YQ TPHDEWDY G+N M L+EQ++ GK   LLTH DRNG  YTL+R TG L+ A K
Sbjct  306  VKWIYQMTPHDEWDYDGINEMVLTEQKIGGKERKLLTHFDRNGFGYTLDRVTGELLVAEK  365

Query  378  IDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDP  429
             D  VNW  KVD+       G P+  P++ST     D N KGICP+A+G  ++   +Y P
Sbjct  366  YDPAVNWATKVDMDKSSKSYGRPLVVPQFSTAHGGEDVNTKGICPAALGSKDEQPSAYSP  425

Query  430  DKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGM--LGQVKAMNAVTGKME  487
              +L ++  NH+CMD+EPF + Y AGQ +VGATL+MYP PKG   +G   A +A  GK+ 
Sbjct  426  LTELHYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYP-PKGESNMGNFIAWDAKVGKIV  484

Query  488  WEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHN  547
            W   E+F+VW G LATAG++VFYGTL+G++KA D +TGE  ++F+ PSG+IG+ +TY+H 
Sbjct  485  WSNKEQFSVWSGALATAGNVVFYGTLEGYLKAVDAKTGEELYKFKTPSGIIGNVMTYEHK  544

Query  548  GKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GKQ++AI SGVGGW G+GL   L DP AGLGAVG +  L++YT +GG + VF+L
Sbjct  545  GKQFVAILSGVGGWAGIGLAAGLTDPNAGLGAVGGYAALSNYTALGGQLTVFAL  598


&gt;<input name="getSeqGi" value="290349616" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for BAI77916" href="http://www.ncbi.nlm.nih.gov/protein/290349616?report=genbank&amp;log$=protalign&amp;blast_rank=74&amp;RID=CJ3JAY4J013">dbj|BAI77916.1|</a><a name="290349616"></a>  methanol dehydrogenase alpha subunit [Bradyrhizobium sp. MAFF 
211645]
Length=601

 Score =  625 bits (1612),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 306/600 (51%), Positives = 415/600 (69%), Gaps = 24/600 (4%)

Query  15   LAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTL  74
            L   AV A  + +AN EL +++++ ++WVM T DY+ T +S+L +IN+ NV  ++VAWT 
Sbjct  10   LGAMAVFAVGAANANDELHKMAQNPKDWVMPTGDYANTRYSKLNQINASNVGKMQVAWTF  69

Query  75   STGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDV  134
            STG L GHEG PL++  +MY+HTPFPN VYA+DL+   +++W+Y+PKQ+P    V CCD 
Sbjct  70   STGVLRGHEGGPLIIGNMMYVHTPFPNKVYAIDLSKDNQIVWKYEPKQDPNVIPVMCCDT  129

Query  135  VNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVK  194
            VNRG+AY      G  KIFL+Q D  +VAL+AKTG+  W ++N D + GST T AP V+K
Sbjct  130  VNRGVAY------GDGKIFLHQADTTLVALDAKTGKVEWTVKNGDPSKGSTGTSAPMVIK  183

Query  195  DKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNP----HYGQ  250
            DKVL+G +G E GV+ +++AY+IK GK  WR Y+ G      + + ++   P        
Sbjct  184  DKVLIGISGGEFGVQAHMSAYDIKTGKLVWRGYSEG-----RMTRSWSTTRPPSSASRSA  238

Query  251  FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWG  310
                L TW+GD WKIGGG  WGW +YDP+L+++YYGSGNP+ WN   RPGDNKW+MTIW 
Sbjct  239  RTPSLKTWQGDQWKIGGGATWGWISYDPELNLVYYGSGNPSTWNPKQRPGDNKWSMTIWA  298

Query  311  RDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETG  370
            R+ DTG AK+ YQ TPHDEWDY G+N M LS+Q +DGK   LLTH DRNGL YTL+R TG
Sbjct  299  RNPDTGVAKWVYQMTPHDEWDYDGINEMILSDQSIDGKARKLLTHFDRNGLGYTLDRATG  358

Query  371  ALVNAFKIDDTVNWVKKVDLKTGLP------IRDPEYSTRM--DHNAKGICPSAMGYHNQ  422
             L+ A K D  VNW   VD+K   P      + D   + +   DHN KGICP+A+G  ++
Sbjct  359  ELLVAEKYDPKVNWTSGVDMKKDSPTYGRPKVLDAASTDKAGEDHNVKGICPAALGSKDE  418

Query  423  GIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP-KGMLGQVKAMNA  481
               +Y PD +LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P +  +G   A + 
Sbjct  419  QPAAYSPDTQLFYVPTNHVCMDYEPFKVSYTAGQPYVGATLSMYPPPGETNMGNFIAWDG  478

Query  482  VTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHP  541
             TGK+ W   E+F+VW G LATAG +VFYGTL+G++KA D +TG+  ++F+ PSG+IG+ 
Sbjct  479  KTGKIVWSNKEQFSVWSGALATAGGVVFYGTLEGYLKAVDAKTGKELYKFKTPSGIIGNV  538

Query  542  ITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
             TY++NGKQY+A+ SGVGGW G+GL   L DPTAGLGAVG +  L++YT +GG++ VFSL
Sbjct  539  TTYENNGKQYVAVLSGVGGWAGIGLAAGLTDPTAGLGAVGGYAALSNYTALGGTLTVFSL  598


&gt;<input name="getSeqGi" value="170743819" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001772474" href="http://www.ncbi.nlm.nih.gov/protein/170743819?report=genbank&amp;log$=protalign&amp;blast_rank=75&amp;RID=CJ3JAY4J013">ref|YP_001772474.1|</a><a name="170743819"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=170743819[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=75"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001772474.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
sp. 4-46]
 <a title="Show report for ACA20040" href="http://www.ncbi.nlm.nih.gov/protein/168198093?report=genbank&amp;log$=protalign&amp;blast_rank=75&amp;RID=CJ3JAY4J013">gb|ACA20040.1|</a><a name="168198093"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=168198093[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=75"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACA20040.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
sp. 4-46]
Length=599

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=6131305&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=75">GENE ID: 6131305 M446_5752</a> | methanol/ethanol family PQQ-dependent
dehydrogenase [Methylobacterium sp. 4-46]

 Score =  624 bits (1610),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 309/598 (52%), Positives = 408/598 (68%), Gaps = 16/598 (3%)

Query  14   MLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWT  73
            +LA++A +   +     +L +   +    V+QT DY+ T FS+L +IN+ NV  L+VAWT
Sbjct  6    LLALSAGILGVTPALADDLQKEINNPAQQVLQTVDYANTRFSKLDQINTGNVNKLQVAWT  65

Query  74   LSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCD  133
             STG L GHEGAPLVV  +MY+HTPFPN VYA+DLN   K++W+Y+PKQ+P    V CCD
Sbjct  66   FSTGVLRGHEGAPLVVGDMMYVHTPFPNIVYALDLNQDGKIVWKYEPKQDPNVIPVMCCD  125

Query  134  VVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVV  193
             VNRGLAY         KI L+Q D  +VAL+AKTG+  W + N D   G T T     V
Sbjct  126  TVNRGLAYADG------KIILHQADTTVVALDAKTGKVAWSVVNGDPKKGETNTATVLPV  179

Query  194  KDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGL  253
            KDKV+VG +G E GVR +VTAY++KDGK+ WR Y+ GPD+++L++ +             
Sbjct  180  KDKVIVGISGGEYGVRCHVTAYSLKDGKKIWRGYSMGPDDEMLVNPEKTTSLGKPVGKDS  239

Query  254  GLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDA  313
             L TWEGD WK GGG  WGWY+YDPKL+++YYGSGNP+ WN   RPGDNKW+MT+W RD 
Sbjct  240  SLKTWEGDQWKQGGGCTWGWYSYDPKLNLMYYGSGNPSTWNPKQRPGDNKWSMTVWARDV  299

Query  314  DTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALV  373
            D+G AK+ YQ TPHDEWDY G+N M L++Q+V  K  PLLTH DRNG  YTL+R TG L+
Sbjct  300  DSGEAKWVYQMTPHDEWDYDGINEMILTDQKVGDKERPLLTHFDRNGFGYTLDRATGELL  359

Query  374  NAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIE  425
             A K D  VNW  KVD+       G P+   +YST     D N+KGICP+A+G  +Q   
Sbjct  360  VAEKYDPVVNWASKVDMDKSSKTYGRPLVQAKYSTEQNGEDVNSKGICPAALGSKDQQPA  419

Query  426  SYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVT  483
            +Y P   LF++  NH+CMD+EPF + Y  GQ +VGATL+MYP P   G +G   A + V 
Sbjct  420  AYSPKTNLFYVPTNHVCMDYEPFRVSYTPGQPYVGATLSMYPAPNSHGGMGNFIAWDGVN  479

Query  484  GKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPIT  543
            GK++W VPE+F+VW G LATAGD+VFYGTL+G++KA D ++G+  ++F+ PSG+IG+ +T
Sbjct  480  GKIKWSVPEQFSVWSGALATAGDVVFYGTLEGYLKAVDAKSGKELYKFKTPSGIIGNVMT  539

Query  544  YQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            Y+H GKQ +A+ SGVGGW G+GL   L DP AGLGAVG +  L++YT +GG + VF+L
Sbjct  540  YEHKGKQNVAVLSGVGGWAGIGLAAGLTDPNAGLGAVGGYAALSNYTNLGGQLTVFTL  597


&gt;<input name="getSeqGi" value="307945181" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_07660517" href="http://www.ncbi.nlm.nih.gov/protein/307945181?report=genbank&amp;log$=protalign&amp;blast_rank=76&amp;RID=CJ3JAY4J013">ref|ZP_07660517.1|</a><a name="307945181"></a>  methanol dehydrogenase subunit 1 [Roseibium sp. TrichSKD4]
 <a title="Show report for EFO30279" href="http://www.ncbi.nlm.nih.gov/protein/307771054?report=genbank&amp;log$=protalign&amp;blast_rank=76&amp;RID=CJ3JAY4J013">gb|EFO30279.1|</a><a name="307771054"></a>  methanol dehydrogenase subunit 1 [Roseibium sp. TrichSKD4]
Length=599

 Score =  624 bits (1610),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 307/601 (51%), Positives = 408/601 (68%), Gaps = 22/601 (4%)

Query  14   MLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWT  73
            + A A   +A    A++ L ++  D   WV+QT DY    +S+L +IN  NV +++VAWT
Sbjct  6    LAATAICFSAGLAQADANLQKMMDDPNQWVIQTGDYKNQRYSKLEQINKDNVGDMQVAWT  65

Query  74   LSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCD  133
             STG L GHEG+PLV+  +MY+HTPFPN VYA+DL +  K++W+Y+PKQ+     V CCD
Sbjct  66   FSTGVLRGHEGSPLVIGDVMYVHTPFPNTVYALDLANEGKIIWKYEPKQDTNVIPVMCCD  125

Query  134  VVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVV  193
             VNRG+AY         KI L+Q D  +VAL+AKTG E+W + N D ++G T T     V
Sbjct  126  TVNRGVAYADG------KILLHQADTKVVALDAKTGAEVWSVVNGDPSIGETNTATVMPV  179

Query  194  KDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ---  250
             DKV+VG +G E GVRG VTAYN+ DG Q WRAY+ GPD D+L+D +      H G+   
Sbjct  180  GDKVIVGISGGEFGVRGSVTAYNLADGSQAWRAYSMGPDSDILVDPE---KTTHLGKPVG  236

Query  251  FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWG  310
               GL+TWEGD WKIGGGT WGWY+YD + ++IYYG+GNP+ WN   RPGDN+W+MTI  
Sbjct  237  VDSGLNTWEGDQWKIGGGTTWGWYSYDAEENLIYYGTGNPSTWNPAQRPGDNRWSMTIMA  296

Query  311  RDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETG  370
            RDADTG AK+ YQ TPHDEWD+ G+N M L+EQEV+G+   LLTH DRNG  YTL+R +G
Sbjct  297  RDADTGMAKWFYQMTPHDEWDFDGINEMILTEQEVNGETRKLLTHFDRNGFGYTLDRVSG  356

Query  371  ALVNAFKIDDTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQ  422
             L+ A K D  VNW   V++     + G P    +YST     D N+ GICP+A+G  +Q
Sbjct  357  ELLVAEKFDPVVNWATHVEMDKNSDQYGRPQVVAQYSTEQNGEDVNSTGICPAALGSKDQ  416

Query  423  GIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMN  480
               S+ P   LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P   G +G   A +
Sbjct  417  QPASFSPKSGLFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYPAPDSHGGMGNFIAWD  476

Query  481  AVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGH  540
             + G++ W +PE+F+VW G LATAGD+VFYGTL+G++KA D+ TGE  ++F+ PSG+IG+
Sbjct  477  NIKGEIVWSLPEQFSVWSGALATAGDIVFYGTLEGYLKAVDSTTGEELYKFKTPSGIIGN  536

Query  541  PITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFS  600
             +TY H GKQY+A+ SGVGGW G+GL   L +P  GLGAVG +  L+ YT +GG + VFS
Sbjct  537  VMTYTHGGKQYVAVLSGVGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFS  596

Query  601  L  601
            L
Sbjct  597  L  597


&gt;<input name="getSeqGi" value="91774700" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_544456" href="http://www.ncbi.nlm.nih.gov/protein/91774700?report=genbank&amp;log$=protalign&amp;blast_rank=77&amp;RID=CJ3JAY4J013">ref|YP_544456.1|</a><a name="91774700"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91774700[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=77"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_544456.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Methylobacillus flagellatus KT]
 <a title="Show report for ABE48615" href="http://www.ncbi.nlm.nih.gov/protein/91708687?report=genbank&amp;log$=protalign&amp;blast_rank=77&amp;RID=CJ3JAY4J013">gb|ABE48615.1|</a><a name="91708687"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=91708687[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=77"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABE48615.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Methylobacillus flagellatus KT]
Length=623

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=3999311&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=77">GENE ID: 3999311 Mfla_0344</a> | Pyrrolo-quinoline quinone
[Methylobacillus flagellatus KT] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  625 bits (1612),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 317/637 (50%), Positives = 415/637 (65%), Gaps = 50/637 (8%)

Query  1    MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI  60
            M+   L    G S++ +A++       A ++L++L +DD  W  Q KDY+ T +S+L++I
Sbjct  1    MKAKHLKIALGASLIGLASI----PGFAATDLEKLMQDDNQWATQRKDYANTGYSKLSQI  56

Query  61   NSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKP  120
            N  N+KNLK AWT +TG   GHEGAPLVVD  +Y  T FPNNVYA+DLN+  K+ W Y P
Sbjct  57   NQSNIKNLKAAWTFATGVNRGHEGAPLVVDDTLYFTTAFPNNVYALDLNNEEKIKWSYFP  116

Query  121  KQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDI  180
            KQ+P+ +A+ CCD V RGLAY      G  KIFL Q DG +VAL+AKTG ++W++   D+
Sbjct  117  KQDPSVQALLCCDNVTRGLAY------GDGKIFLQQNDGQLVALDAKTGAKVWEVGVVDV  170

Query  181  AMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKD  240
              G+T T AP V KDKV+ G +G E GVR Y+TAYNIKDG   WRAYATGPD D+L+ KD
Sbjct  171  KQGATTTNAPHVFKDKVITGCSGGEYGVRCYLTAYNIKDGSIAWRAYATGPDSDVLIGKD  230

Query  241  FNKDNPHYGQFG-----------------------------LGLSTW-----EGDAWKIG  266
            FNKDNPHY                                 LG+ TW       + W+ G
Sbjct  231  FNKDNPHYSALSVYEDINGGNQEGGSFKALPKEKLKFPETDLGVKTWLKPQAAKNGWEHG  290

Query  267  GGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTP  326
            GG  WGWY+YDP L+++YY +GNP+ WN  +RPGDNKW+MTI+ RD DTG AK+GYQ TP
Sbjct  291  GGGTWGWYSYDPALNLVYYATGNPSVWNPDVRPGDNKWSMTIFARDLDTGLAKWGYQLTP  350

Query  327  HDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVK  386
            HDEWDY  VN   L   + DGK   L TH DRNG  YTL+R+TG L+ A K+   VNW  
Sbjct  351  HDEWDYDAVNETIL--WDADGK--KLATHFDRNGFGYTLDRQTGKLLVAEKMHPFVNWAT  406

Query  387  KVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWE  446
             +DL TG PI+DP+Y+T  D    GICP+A+G  +Q   +Y P  KLF++ +NH+CMD+E
Sbjct  407  GIDLTTGTPIKDPKYATHQDVQISGICPAALGVKDQQPAAYSPKTKLFYVPLNHVCMDYE  466

Query  447  PFMLPYRAGQFFVGATLNMYPGPKGMLGQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGD  506
            P  + Y AGQ +VGATL+MYPGP G++G   A + + GK  W   EKF+VW G LATA D
Sbjct  467  PVEVKYVAGQPWVGATLSMYPGPDGVMGGFMAWDGLKGKQVWYKKEKFSVWSGALATATD  526

Query  507  LVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGL  566
            +VFYGTLD + KA D ++G+  W+F++ SGV+G+PITY H GKQY+A+ SG+GGW GV +
Sbjct  527  IVFYGTLDRWFKAVDAKSGKELWKFRVGSGVVGNPITYTHKGKQYVALLSGIGGWAGVAM  586

Query  567  VFDLKDPTAGLGAVGAFRELAHYTQM--GGSVFVFSL  601
               L +   GLGA G ++EL  +     GG++ VFSL
Sbjct  587  NLGLTNDNEGLGAAGGYKELKEWNAAPGGGALNVFSL  623


&gt;<input name="getSeqGi" value="220925805" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_002501107" href="http://www.ncbi.nlm.nih.gov/protein/220925805?report=genbank&amp;log$=protalign&amp;blast_rank=78&amp;RID=CJ3JAY4J013">ref|YP_002501107.1|</a><a name="220925805"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=220925805[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=78"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002501107.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Methylobacterium nodulans ORS 2060]
 <a title="Show report for ACL60804" href="http://www.ncbi.nlm.nih.gov/protein/219950412?report=genbank&amp;log$=protalign&amp;blast_rank=78&amp;RID=CJ3JAY4J013">gb|ACL60804.1|</a><a name="219950412"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=219950412[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=78"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACL60804.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
nodulans ORS 2060]
Length=600

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=7305337&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=78">GENE ID: 7305337 Mnod_5977</a> | PQQ-dependent dehydrogenase
[Methylobacterium nodulans ORS 2060]

 Score =  624 bits (1608),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/599 (52%), Positives = 409/599 (68%), Gaps = 17/599 (3%)

Query  14   MLAMAA-VLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            +LA++A VL      AN +L +   +    V+QT DY+ T +S+L +IN+ NV  L+VAW
Sbjct  6    LLALSAGVLGVTPALANDDLIKQIANPAQQVLQTVDYANTRYSKLDQINTGNVNKLQVAW  65

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACC  132
            T STG L GHEG+PLVV   MY+HTPFPN VYA+DLN   K+ W+Y+PKQ+P    V CC
Sbjct  66   TFSTGVLRGHEGSPLVVGDTMYVHTPFPNIVYALDLNQDGKIAWKYEPKQDPNVIPVMCC  125

Query  133  DVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFV  192
            D VNRGLAY         KI L+Q D  +VAL+AKTG+ +W + N D   G T T     
Sbjct  126  DTVNRGLAYADG------KIILHQADTTVVALDAKTGKVVWSVVNGDPKKGETNTATVLP  179

Query  193  VKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG  252
            VKDKV+VG +G E GVR +VTAY++KDGK+ WR Y+ GPD+++L+D +            
Sbjct  180  VKDKVIVGISGGEYGVRCHVTAYSLKDGKKIWRGYSMGPDDEMLIDPEKTTSLGKPVGKD  239

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
              L TWEGD WK GGG  WGW++YDPKL+++YYGSGNP+ WN   RPGDNKW+MTIW RD
Sbjct  240  SSLKTWEGDQWKQGGGCTWGWFSYDPKLNLMYYGSGNPSTWNPKQRPGDNKWSMTIWARD  299

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGAL  372
             DTG+AK+ YQ TPHDEWDY G+N M L++Q+   K  PLLTH DRNG  YTL+R TG L
Sbjct  300  VDTGQAKWVYQMTPHDEWDYDGINEMILTDQKFGDKERPLLTHFDRNGFGYTLDRATGEL  359

Query  373  VNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            + A K D  VNW  KVD+       G P+   +YST     D N KG+CP+A+G  +Q  
Sbjct  360  LVAEKYDPVVNWATKVDMDKSSKNYGRPLVVAKYSTEQNGEDVNTKGVCPAALGTKDQQP  419

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAV  482
             +Y P  +LF++  NH+CMD+EPF + Y  GQ +VGATL+MYP P   G +G   A + V
Sbjct  420  AAYSPKTQLFYVPTNHVCMDYEPFRVSYTPGQPYVGATLSMYPAPNSHGGMGNFIAWDNV  479

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             GK++W VPE+F+VW G LATAGD+VFYGTL+G++KA D ++G+  ++F+ PSG+IG+ +
Sbjct  480  NGKIKWSVPEQFSVWSGALATAGDVVFYGTLEGYLKAVDAKSGKELYRFKTPSGIIGNVM  539

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY+H GKQ +A+ SGVGGW G+GL   L DP AGLGAVG +  L++YT +GG + VF+L
Sbjct  540  TYEHKGKQNVAVLSGVGGWAGIGLAAGLTDPNAGLGAVGGYAALSNYTNLGGQLTVFNL  598


&gt;<input name="getSeqGi" value="146342329" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001207377" href="http://www.ncbi.nlm.nih.gov/protein/146342329?report=genbank&amp;log$=protalign&amp;blast_rank=79&amp;RID=CJ3JAY4J013">ref|YP_001207377.1|</a><a name="146342329"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=146342329[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=79"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001207377.1" border="0" height="16" width="16"></a> methanol dehydrogenase large subunit-like protein [Bradyrhizobium 
sp. ORS 278]
 <a title="Show report for CAL79160" href="http://www.ncbi.nlm.nih.gov/protein/146195135?report=genbank&amp;log$=protalign&amp;blast_rank=79&amp;RID=CJ3JAY4J013">emb|CAL79160.1|</a><a name="146195135"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=146195135[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=79"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to CAL79160.1" border="0" height="16" width="16"></a> Methanol dehydrogenase large subunit homolog [Bradyrhizobium 
sp. ORS 278]
Length=600

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=5119391&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=79">GENE ID: 5119391 mxaF'</a> | methanol dehydrogenase large subunit-like protein
[Bradyrhizobium sp. ORS278] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  624 bits (1608),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 309/583 (53%), Positives = 405/583 (69%), Gaps = 18/583 (3%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            + EL ++S + ++WVM   DY+ T +S+L +IN+ NV  L+VAWT STG L GHEG PL+
Sbjct  24   SEELVKMSANPKDWVMPAGDYANTRYSKLNQINAQNVGKLQVAWTFSTGVLRGHEGGPLI  83

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            V  +MY+HTPFPN VYA+DL +  K++W+Y+PKQ+P    V CCD VNRG+AY      G
Sbjct  84   VGNMMYVHTPFPNKVYALDLANDNKIVWKYEPKQDPNVIPVMCCDTVNRGVAY------G  137

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
              KIFL+Q D  +VA++AKTG+ +W   N D + G T T AP VVKDKVLVG++G E GV
Sbjct  138  DGKIFLHQADDKLVAIDAKTGQHVWTAVNGDPSKGQTGTSAPLVVKDKVLVGTSGGEFGV  197

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            +  +TAY+IK GKQ W+AY+ GPD+ +L D +        G+    L TW+GD WK GGG
Sbjct  198  QCSMTAYDIKSGKQVWKAYSEGPDDQILFDANTTSLGKPVGKDS-SLKTWQGDQWKTGGG  256

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
              WGW +YDP+LDM+YYGSGNP+ WN   RPGDNKW+MTI+ R ADTG AK+ YQ TPHD
Sbjct  257  CTWGWVSYDPQLDMVYYGSGNPSTWNPKQRPGDNKWSMTIFARAADTGVAKWVYQMTPHD  316

Query  329  EWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKV  388
            EWDY GVN M LS+Q ++G+   LLTH DRNGL YTL+R  G L+ A K D  VNW   V
Sbjct  317  EWDYDGVNEMILSDQSINGQPRKLLTHFDRNGLAYTLDRANGELLVAEKYDPKVNWTSGV  376

Query  389  DLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNH  440
            D+       G P    +YST     D N KGICP+A+G  ++   +Y PD +LF++  NH
Sbjct  377  DMDKNSATYGRPKVLDQYSTDKQGEDVNTKGICPAALGTKDEQPAAYSPDTQLFYVPTNH  436

Query  441  ICMDWEPFMLPYRAGQFFVGATLNMYPGPKGM--LGQVKAMNAVTGKMEWEVPEKFAVWG  498
            +CMD+EPF + Y AGQ +VGATL+MYP P+G   +G   A +  TGK+ W   E F+VW 
Sbjct  437  VCMDYEPFKVSYTAGQPYVGATLSMYP-PQGETNMGNFIAWDGKTGKIAWSNKEPFSVWS  495

Query  499  GTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGV  558
            G LATAG +VFYGTL+G++KA D +TG+  ++F+ PSG+IG+  TY+  GKQY+A+ SGV
Sbjct  496  GALATAGGVVFYGTLEGYLKAVDAKTGKELYKFKTPSGIIGNVTTYEAGGKQYVAVLSGV  555

Query  559  GGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GGW G+GL   L DPTAGLGAVG +  L++YT +GG++ VFSL
Sbjct  556  GGWAGIGLAAGLTDPTAGLGAVGGYAALSNYTALGGALTVFSL  598


&gt;<input name="getSeqGi" value="148257228" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001241813" href="http://www.ncbi.nlm.nih.gov/protein/148257228?report=genbank&amp;log$=protalign&amp;blast_rank=80&amp;RID=CJ3JAY4J013">ref|YP_001241813.1|</a><a name="148257228"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=148257228[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=80"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001241813.1" border="0" height="16" width="16"></a> methanol dehydrogenase large subunit [Bradyrhizobium sp. BTAi1]
 <a title="Show report for ABQ37907" href="http://www.ncbi.nlm.nih.gov/protein/146409401?report=genbank&amp;log$=protalign&amp;blast_rank=80&amp;RID=CJ3JAY4J013">gb|ABQ37907.1|</a><a name="146409401"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=146409401[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=80"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABQ37907.1" border="0" height="16" width="16"></a> Methanol dehydrogenase large subunit [Bradyrhizobium sp. BTAi1]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=5150682&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=80">GENE ID: 5150682 mxaF'</a> | methanol dehydrogenase large subunit
[Bradyrhizobium sp. BTAi1] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  623 bits (1606),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 307/582 (53%), Positives = 403/582 (69%), Gaps = 16/582 (3%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            + EL ++S + ++WVM   DY+ T +S+L +I + NV  L+VAWT STG L GHEG PL+
Sbjct  24   SEELVKMSANPKDWVMPAGDYANTRYSKLNQITAQNVGKLQVAWTFSTGVLRGHEGGPLI  83

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            V  +MY+HTPFPN VYA+DL    K++W+Y+PKQ+P    V CCD VNRG+AY      G
Sbjct  84   VGNMMYVHTPFPNKVYAIDLAQDNKIVWRYEPKQDPNVIPVMCCDTVNRGVAY------G  137

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
              KIFL+Q D  +VA++AKTG+ +W   N D + G T T AP VVKDKVLVG++G E GV
Sbjct  138  DGKIFLHQADDKLVAIDAKTGQHVWTAVNGDPSKGQTGTSAPLVVKDKVLVGTSGGEFGV  197

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            +  +TAY+IK GKQ W+AY+ GPD+ +L D +        G+    L TW+GD WK GGG
Sbjct  198  QCSMTAYDIKSGKQVWKAYSEGPDDQILFDANTTSLGKPVGKDS-SLKTWQGDQWKTGGG  256

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
              WGW +YDP+LDM+YYGSGNP+ WN   RPGDNKW+MTI+ R ADTG AK+ YQ TPHD
Sbjct  257  CTWGWISYDPQLDMVYYGSGNPSTWNPKQRPGDNKWSMTIFARAADTGVAKWVYQMTPHD  316

Query  329  EWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKV  388
            EWDY GVN M LS+Q ++G+   LLTH DRNGL YTL+R  G L+ A K D  VNW   V
Sbjct  317  EWDYDGVNEMILSDQAINGQPRKLLTHFDRNGLAYTLDRTNGELLVAEKYDPKVNWTTGV  376

Query  389  DLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNH  440
            D+       G P    +YST     D N KGICP+A+G  ++   +Y PD +LF++  NH
Sbjct  377  DMDKNSATYGRPKVVDQYSTDKQGEDVNTKGICPAALGTKDEQPAAYSPDTQLFYVPTNH  436

Query  441  ICMDWEPFMLPYRAGQFFVGATLNMYPGP-KGMLGQVKAMNAVTGKMEWEVPEKFAVWGG  499
            +CMD+EPF + Y AGQ +VGATL+MYP P +  +G   A +  TGK+ W   E F+VW G
Sbjct  437  VCMDYEPFKVSYTAGQPYVGATLSMYPPPGESHMGNFIAWDGKTGKIAWSNKEPFSVWSG  496

Query  500  TLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVG  559
             LATAG +VFYGTL+G++KA D +TG+  ++F+ PSG+IG+  TY++ GKQY+A+ SGVG
Sbjct  497  ALATAGGVVFYGTLEGYLKAVDAKTGKELYKFKTPSGIIGNVTTYENGGKQYVAVLSGVG  556

Query  560  GWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GW G+GL   L DPTAGLGAVG +  L++YT +GG++ VFSL
Sbjct  557  GWAGIGLAAGLTDPTAGLGAVGGYAALSNYTALGGTLTVFSL  598


&gt;<input name="getSeqGi" value="170746942" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001753202" href="http://www.ncbi.nlm.nih.gov/protein/170746942?report=genbank&amp;log$=protalign&amp;blast_rank=81&amp;RID=CJ3JAY4J013">ref|YP_001753202.1|</a><a name="170746942"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=170746942[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=81"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001753202.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
radiotolerans JCM 2831]
 <a title="Show report for ACB22519" href="http://www.ncbi.nlm.nih.gov/protein/170653464?report=genbank&amp;log$=protalign&amp;blast_rank=81&amp;RID=CJ3JAY4J013">gb|ACB22519.1|</a><a name="170653464"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=170653464[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=81"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACB22519.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
radiotolerans JCM 2831]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=6136521&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=81">GENE ID: 6136521 Mrad2831_0508</a> | methanol/ethanol family PQQ-dependent
dehydrogenase [Methylobacterium radiotolerans JCM 2831]
<span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  622 bits (1605),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 307/577 (53%), Positives = 399/577 (69%), Gaps = 32/577 (6%)

Query  43   VMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNN  102
            V+QT DY+ T +S+L +IN+ NVK+L+VAWT STG L GHEG+PLVV  +MY+HTPFPN 
Sbjct  37   VLQTVDYANTRYSKLDQINAKNVKDLQVAWTFSTGVLRGHEGSPLVVGNVMYVHTPFPNI  96

Query  103  VYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIV  162
            VYA+DL+   K+LW+Y+PKQ+P+   V CCD VNRGLAY          I L+Q D  +V
Sbjct  97   VYALDLDHEAKILWKYEPKQDPSVIPVMCCDTVNRGLAYADGA------ILLHQADTTLV  150

Query  163  ALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQ  222
            +L+AKTG+  W + N D   G T T     VKDKV+VG +G E GV+ +VTAY++K GK+
Sbjct  151  SLDAKTGKVNWSVVNGDPKKGETNTATVLPVKDKVIVGISGGEFGVQCHVTAYDLKTGKK  210

Query  223  EWRAYATGPDEDLLLD--------KDFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWY  274
             WR Y+ GPD+ L++D        K   KD+         L TWEGD WK GGG  WGW+
Sbjct  211  VWRGYSEGPDDQLIVDPEKTTSLGKPIGKDS--------SLKTWEGDQWKTGGGCTWGWF  262

Query  275  AYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAG  334
            +YDPKLD++YYGSGNP+ WN   RPGDNKW+MTIW R+ DTG AK+ YQ TPHDEWDY G
Sbjct  263  SYDPKLDLMYYGSGNPSTWNPKQRPGDNKWSMTIWARNPDTGMAKWVYQMTPHDEWDYDG  322

Query  335  VNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKT--  392
            +N M L++Q++DGK  PLLTH DRNG  YTLNR TG L+ A K D  VNW  KVD+    
Sbjct  323  INEMILTDQKIDGKEQPLLTHFDRNGFGYTLNRATGELLVAEKFDPAVNWATKVDMDKGS  382

Query  393  ---GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWE  446
               G P+   +YST     D N+KGICP+A+G  +Q   ++ P   LF++  NH+CMD+E
Sbjct  383  KNYGRPLVVSKYSTEQNGEDTNSKGICPAALGTKDQQPAAFSPKTNLFYVPTNHVCMDYE  442

Query  447  PFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTGKMEWEVPEKFAVWGGTLATA  504
            PF + Y  GQ +VGATL+MYP P   G +G   A + V GK++W  PE+F+VW G LATA
Sbjct  443  PFRVTYTPGQPYVGATLSMYPAPNSHGGMGNFIAWDGVNGKIKWSNPEQFSVWSGALATA  502

Query  505  GDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGV  564
            GD+VFYGTL+G++KA D +TG+  ++F+ PSG+IG+ +TYQH GKQY+ + SGVGGW G+
Sbjct  503  GDVVFYGTLEGYLKAVDDKTGKELFKFKTPSGIIGNVMTYQHKGKQYVGVLSGVGGWAGI  562

Query  565  GLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GL   L DP AGLGAVG +  L+ YT +GG + VF+L
Sbjct  563  GLAAGLTDPNAGLGAVGGYAALSQYTNLGGQLTVFAL  599


&gt;<input name="getSeqGi" value="114763281" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_01442705" href="http://www.ncbi.nlm.nih.gov/protein/114763281?report=genbank&amp;log$=protalign&amp;blast_rank=82&amp;RID=CJ3JAY4J013">ref|ZP_01442705.1|</a><a name="114763281"></a>  putative methanol dehydrogenase protein, large subunit [Pelagibaca 
bermudensis HTCC2601]
 <a title="Show report for EAU47089" href="http://www.ncbi.nlm.nih.gov/protein/114544079?report=genbank&amp;log$=protalign&amp;blast_rank=82&amp;RID=CJ3JAY4J013">gb|EAU47089.1|</a><a name="114544079"></a>  putative methanol dehydrogenase protein, large subunit [Roseovarius 
sp. HTCC2601]
Length=600

 Score =  622 bits (1605),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 306/586 (52%), Positives = 402/586 (69%), Gaps = 22/586 (4%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N +L     D   W +QT DY+   +S L  IN  NV +L+VAWT STG L GHEG+PLV
Sbjct  22   NEDLMTQMDDASQWAIQTGDYANQRYSELDSINKDNVGDLQVAWTFSTGVLRGHEGSPLV  81

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            V   M++HTPFPN VYA+DLN+  K+ W+Y+PKQ+P    V CCD VNRG+AY       
Sbjct  82   VGDTMFVHTPFPNIVYALDLNEDGKIKWRYEPKQDPNVIPVMCCDTVNRGVAYADG----  137

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
              KIFL+Q D  +VAL+++TGE +W+  N D + G T T     VKDKV+VG +G E GV
Sbjct  138  --KIFLHQADTKVVALDSETGEVLWEAVNGDPSKGETNTATVLPVKDKVIVGISGGEFGV  195

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ---FGLGLSTWEGDAWKI  265
            RG VTAYN++ G+QEWRAY+ GPDED+L+D    ++  H G+      G +TWEGD W I
Sbjct  196  RGSVTAYNMETGEQEWRAYSMGPDEDILVDP---ENTTHLGEPVGADSGTNTWEGDQWMI  252

Query  266  GGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKT  325
            GGGT WGWY+YDP+ D+IYYG+GNP+ WN   RPGDN+W+MT+  RD D G AK+ YQ T
Sbjct  253  GGGTTWGWYSYDPEADLIYYGTGNPSTWNPAQRPGDNRWSMTVMARDPDDGMAKWFYQMT  312

Query  326  PHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWV  385
            PHDEWDY G+N M L++QE+DG++  LLTH DRNGL YT++R TG L+ A K D  VNW 
Sbjct  313  PHDEWDYDGINEMILTDQEMDGEMRQLLTHFDRNGLAYTMDRITGELLVAEKFDPVVNWT  372

Query  386  KKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMG  437
              VD+       G P    EYST     D N+ GICP+A+G  +Q   SY P  +LF++ 
Sbjct  373  TGVDMDPASENYGRPAVVAEYSTEQNGEDVNSTGICPAALGTKDQQPASYSPKTELFYVP  432

Query  438  VNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTGKMEWEVPEKFA  495
             NH+CMD+EPF + Y AGQ +VGATL MYP P   G +G   A + + G+++W +PE+F+
Sbjct  433  TNHVCMDYEPFRVSYTAGQPYVGATLAMYPAPDSHGGMGNFIAWDNINGEIKWSIPEQFS  492

Query  496  VWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIY  555
            VW G LATAGD+VFYGTL+G++KA D+ TG+  ++F+ PSG+IG+ +TY+H GKQY+ I 
Sbjct  493  VWSGALATAGDVVFYGTLEGYLKAVDSETGDELYRFKTPSGIIGNVMTYEHGGKQYVGIL  552

Query  556  SGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            SGVGGW G+GL   L +P  GLGAVG +  L+ YT +GG + VF+L
Sbjct  553  SGVGGWAGIGLAAGLTNPNDGLGAVGGYSALSDYTALGGQLTVFAL  598


&gt;<input name="getSeqGi" value="260575632" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_05843629" href="http://www.ncbi.nlm.nih.gov/protein/260575632?report=genbank&amp;log$=protalign&amp;blast_rank=83&amp;RID=CJ3JAY4J013">ref|ZP_05843629.1|</a><a name="260575632"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Rhodobacter 
sp. SW2]
 <a title="Show report for EEW25329" href="http://www.ncbi.nlm.nih.gov/protein/259022030?report=genbank&amp;log$=protalign&amp;blast_rank=83&amp;RID=CJ3JAY4J013">gb|EEW25329.1|</a><a name="259022030"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Rhodobacter 
sp. SW2]
Length=600

 Score =  622 bits (1604),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 313/592 (53%), Positives = 402/592 (68%), Gaps = 22/592 (4%)

Query  23   AQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGH  82
            A S  AN  L  L  D   WV+QT DY+   +S L +IN+ NV +L+VAWT STG L GH
Sbjct  16   ALSVSANPALQALIDDPNQWVIQTGDYANQRYSELDQINTGNVADLQVAWTFSTGVLRGH  75

Query  83   EGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYV  142
            EG+PLVV  IMY+H+PFPN VYA+DLND  K++W+Y+P Q+P    V CCD VNRG+AY 
Sbjct  76   EGSPLVVGDIMYVHSPFPNKVYALDLNDNGKIIWRYEPVQDPTVIPVMCCDTVNRGVAYA  135

Query  143  PAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSA  202
                    KIFL+Q D  +VAL+A TG  +W ++N D   G T T     VKDK++VG +
Sbjct  136  DG------KIFLHQADTTVVALDALTGAVVWSVKNGDPTKGETNTATVMPVKDKLIVGIS  189

Query  203  GAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF---GLGLSTWE  259
            G E GVRG VTAYNI DG   WR Y+ GPD D L+D     +  H G+      G +TWE
Sbjct  190  GGEFGVRGSVTAYNIADGSLAWRGYSMGPDSDTLIDP---VNTTHLGKPVGPDSGTNTWE  246

Query  260  GDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAK  319
            GD WKIGGGT WGWY+YDP+L++IYYGSGNP+ WN + RPGDN+W+MTIW RDADTG AK
Sbjct  247  GDQWKIGGGTTWGWYSYDPELNLIYYGSGNPSTWNPSQRPGDNRWSMTIWARDADTGVAK  306

Query  320  FGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKID  379
            + YQ TPHDEWD+ GVN M L+EQ++ G    LLTH DRNG  YTL+R TG L+ A K D
Sbjct  307  WVYQMTPHDEWDFDGVNEMVLTEQQIGGVDRKLLTHFDRNGFGYTLDRVTGELLVAQKYD  366

Query  380  DTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDK  431
              VNW  +V +     + G P     YST+    D N+ GICP+A+G  +Q   +Y P  
Sbjct  367  PQVNWASEVVMDPASDQYGRPQVVAAYSTQQNGEDVNSTGICPAALGSKDQQPSAYSPKT  426

Query  432  KLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTGKMEWE  489
            +L ++  NH+CMD+EPF + Y AGQ +VGATL MYP P   G +G   A +A  GK++W 
Sbjct  427  QLHYVPTNHVCMDYEPFRVSYTAGQPYVGATLAMYPAPDSHGGMGNFIAWDAKEGKIKWS  486

Query  490  VPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGK  549
            +PE+F+VW G LATAGD+VFYGTL+G++KA D  TG   ++F+ PSG+IG+ +TY H GK
Sbjct  487  LPEQFSVWSGALATAGDVVFYGTLEGYLKAVDANTGAELYRFKTPSGIIGNVMTYGHGGK  546

Query  550  QYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            QY+A+YSGVGGW G+GL   L +P  GLGAVG +  L+ YT +GG++ VF+L
Sbjct  547  QYVAVYSGVGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTALGGTLTVFAL  598


&gt;<input name="getSeqGi" value="11139249" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for AAG31643" href="http://www.ncbi.nlm.nih.gov/protein/11139249?report=genbank&amp;log$=protalign&amp;blast_rank=84&amp;RID=CJ3JAY4J013">gb|AAG31643.1|AF309488_1</a><a name="11139249"></a>  methanol dehydrogenase large subunit-like protein [Sinorhizobium 
meliloti]
Length=601

 Score =  620 bits (1598),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 313/606 (52%), Positives = 412/606 (68%), Gaps = 28/606 (5%)

Query  14   MLAMAAVLA----AQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
            +L M A+++    AQ   AN EL +L  D   W +QT DY+   +S+L +IN  NV  L+
Sbjct  4    LLTMLAIMSIGGGAQVAFANDELQKLIDDPNQWAIQTGDYANLRYSKLDQINKDNVGKLQ  63

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
            VAWT STG L GHEG+PLV+  +MY+HTPFPN VYA+DL+   +++W+Y+PKQ+P    V
Sbjct  64   VAWTFSTGVLRGHEGSPLVIGDLMYVHTPFPNTVYALDLSKDGQIVWKYEPKQDPNVIPV  123

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
             CCD VNRG+AY         KIFL+Q D  +VAL+AKTG+ IW ++N D   G T T  
Sbjct  124  MCCDTVNRGVAYADN------KIFLHQADTTVVALDAKTGKVIWSVKNGDATKGETNTAT  177

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
               VKDK+LVG +G E GVRG+VTAY++ DGK  WR Y+ GPD D L+D +      H G
Sbjct  178  VMPVKDKILVGISGGEFGVRGHVTAYSMADGKVLWRGYSMGPDSDTLIDPE---KTTHLG  234

Query  250  Q---FGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTM  306
            +      GL+TWEGD WKIGGGT WGWY+YDP+ +++YYG+GNP+ WN T RPGDN+W+M
Sbjct  235  KPVGKDSGLTTWEGDQWKIGGGTTWGWYSYDPEENLVYYGTGNPSTWNPTQRPGDNRWSM  294

Query  307  TIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLN  366
            TI+ RD DTG AK+ YQ TPHDEWDY GVN M L+ Q +DGK   LLTH DRNG  YT++
Sbjct  295  TIFARDVDTGMAKWLYQMTPHDEWDYDGVNEMILTGQHIDGKDRKLLTHFDRNGFGYTMD  354

Query  367  RETGALVNAFKIDDTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMG  418
            R TG L+ A K D TVNW  +V +     K G P    +YST     D N  G+CP+A+G
Sbjct  355  RVTGELLVAEKYDPTVNWATEVVMDPKSDKYGRPQVVAQYSTEQNGEDTNTTGVCPAALG  414

Query  419  YHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK---GMLGQ  475
              +Q   +Y P  +LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP PK   G +G 
Sbjct  415  TKDQQPAAYSPKTELFYVPTNHVCMDYEPFRVSYTAGQPYVGATLSMYP-PKDSHGGMGN  473

Query  476  VKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPS  535
              A +   GK++W +PE F+VW G LATAGD+VFYGTL+G++KA D  TG+  ++F+ PS
Sbjct  474  FIACDNKEGKIKWSLPEPFSVWSGALATAGDVVFYGTLEGYLKAVDAATGKELYRFKTPS  533

Query  536  GVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGS  595
            GVIG+ +TY   GKQY+A+ SGVGGW G+GL   L +PT GLGAVG + +L++Y  +GG+
Sbjct  534  GVIGNVMTYAREGKQYVAVLSGVGGWAGIGLAAGLTNPTEGLGAVGGYSDLSNYNALGGT  593

Query  596  VFVFSL  601
            +  F L
Sbjct  594  LTEFKL  599


&gt;<input name="getSeqGi" value="163851236" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001639279" href="http://www.ncbi.nlm.nih.gov/protein/163851236?report=genbank&amp;log$=protalign&amp;blast_rank=85&amp;RID=CJ3JAY4J013">ref|YP_001639279.1|</a><a name="163851236"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=163851236[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001639279.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
extorquens PA1]
 <a title="Show report for YP_002420920" href="http://www.ncbi.nlm.nih.gov/protein/218530104?report=genbank&amp;log$=protalign&amp;blast_rank=85&amp;RID=CJ3JAY4J013">ref|YP_002420920.1|</a><a name="218530104"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=218530104[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002420920.1" border="0" height="16" width="16"></a> methanol/ethanol family PQQ-dependent dehydrogenase [Methylobacterium 
chloromethanicum CM4]
 <a title="Show report for YP_002962861" href="http://www.ncbi.nlm.nih.gov/protein/240138389?report=genbank&amp;log$=protalign&amp;blast_rank=85&amp;RID=CJ3JAY4J013">ref|YP_002962861.1|</a><a name="240138389"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=240138389[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_002962861.1" border="0" height="16" width="16"></a> XoxF, PQQ-linked dehydrogenase of unknown function [Methylobacterium 
extorquens AM1]
 <a title="Show report for YP_003068030" href="http://www.ncbi.nlm.nih.gov/protein/254560935?report=genbank&amp;log$=protalign&amp;blast_rank=85&amp;RID=CJ3JAY4J013">ref|YP_003068030.1|</a><a name="254560935"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=254560935[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003068030.1" border="0" height="16" width="16"></a> PQQ-linked dehydrogenase [Methylobacterium extorquens DM4]
 <a title="Show report for ABY30208" href="http://www.ncbi.nlm.nih.gov/protein/163662841?report=genbank&amp;log$=protalign&amp;blast_rank=85&amp;RID=CJ3JAY4J013">gb|ABY30208.1|</a><a name="163662841"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=163662841[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABY30208.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
extorquens PA1]
 <a title="Show report for ACK82992" href="http://www.ncbi.nlm.nih.gov/protein/218522407?report=genbank&amp;log$=protalign&amp;blast_rank=85&amp;RID=CJ3JAY4J013">gb|ACK82992.1|</a><a name="218522407"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=218522407[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACK82992.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
chloromethanicum CM4]
 <a title="Show report for ACS39584" href="http://www.ncbi.nlm.nih.gov/protein/240008358?report=genbank&amp;log$=protalign&amp;blast_rank=85&amp;RID=CJ3JAY4J013">gb|ACS39584.1|</a><a name="240008358"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=240008358[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACS39584.1" border="0" height="16" width="16"></a> XoxF, PQQ-linked dehydrogenase of unknown function [Methylobacterium 
extorquens AM1]
 <a title="Show report for CAX24146" href="http://www.ncbi.nlm.nih.gov/protein/254268213?report=genbank&amp;log$=protalign&amp;blast_rank=85&amp;RID=CJ3JAY4J013">emb|CAX24146.1|</a><a name="254268213"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=254268213[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=85"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to CAX24146.1" border="0" height="16" width="16"></a> putative PQQ-linked dehydrogenase precursor [Methylobacterium 
extorquens DM4]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=5831943&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=85">GENE ID: 5831943 Mext_1809</a> | methanol/ethanol family PQQ-dependent
dehydrogenase [Methylobacterium extorquens PA1]

 Score =  619 bits (1597),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 307/592 (52%), Positives = 407/592 (69%), Gaps = 32/592 (5%)

Query  28   ANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPL  87
            AN  + +   +    V+QT DY+ T +S+L +IN+ NVKNL+VAWT STG L GHEG+PL
Sbjct  21   ANESVLKGVANPAEQVLQTVDYANTRYSKLDQINASNVKNLQVAWTFSTGVLRGHEGSPL  80

Query  88   VVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEH  147
            VV  IMY+HTPFPN VYA+DL+   K++W+Y+PKQ+P+   V CCD VNRGLAY      
Sbjct  81   VVGNIMYVHTPFPNIVYALDLDQGAKIVWKYEPKQDPSVIPVMCCDTVNRGLAYADGA--  138

Query  148  GPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELG  207
                I L+Q D  +V+L+AK+G+  W ++N D + G T T     VKDKV+VG +G E G
Sbjct  139  ----ILLHQADTTLVSLDAKSGKVNWSVKNGDPSKGETNTATVLPVKDKVIVGISGGEFG  194

Query  208  VRGYVTAYNIKDGKQEWRAYATGPDEDLLLD--------KDFNKDNPHYGQFGLGLSTWE  259
            V+ +VTAY++K GK+ WR Y+ GPD+ L++D        K   KD+         L TWE
Sbjct  195  VQCHVTAYDLKSGKKVWRGYSIGPDDQLIVDPEKTTSLGKPIGKDS--------SLKTWE  246

Query  260  GDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAK  319
            GD WK GGG  WGW++YDPKLD++YYGSGNP+ WN   RPGDNKW+MTIW R+ DTG AK
Sbjct  247  GDQWKTGGGCTWGWFSYDPKLDLMYYGSGNPSTWNPKQRPGDNKWSMTIWARNPDTGMAK  306

Query  320  FGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKID  379
            + YQ TPHDEWD+ G+N M L++Q+ DGK  PLLTH DRNG  YTL+R TG ++ A K D
Sbjct  307  WVYQMTPHDEWDFDGINEMILTDQKFDGKDRPLLTHFDRNGFGYTLDRATGEVLVAEKFD  366

Query  380  DTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDK  431
              VNW  KVDL       G P+   +YST     D N+KGICP+A+G  +Q   ++ P  
Sbjct  367  PVVNWATKVDLDKGSKTYGRPLVVSKYSTEQNGEDVNSKGICPAALGTKDQQPAAFSPKT  426

Query  432  KLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMNAVTGKMEWE  489
             LF++  NH+CMD+EPF + Y  GQ +VGATL+MYP P   G +G   A + + GK++W 
Sbjct  427  GLFYVPTNHVCMDYEPFRVTYTPGQPYVGATLSMYPAPGSHGGMGNFIAWDNLQGKIKWS  486

Query  490  VPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGK  549
             PE+F+ WGG LATAGD+VFYGTL+GF+KA D++TG+  ++F+ PSG+IG+ +TY+H GK
Sbjct  487  NPEQFSAWGGALATAGDVVFYGTLEGFLKAVDSKTGKELYKFKTPSGIIGNVMTYEHKGK  546

Query  550  QYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            Q++A+ SGVGGW G+GL   L DP AGLGAVG +  L+ YT +GG + VFSL
Sbjct  547  QHVAVLSGVGGWAGIGLAAGLTDPNAGLGAVGGYAALSSYTNLGGQLTVFSL  598


&gt;<input name="getSeqGi" value="126732891" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_01748681" href="http://www.ncbi.nlm.nih.gov/protein/126732891?report=genbank&amp;log$=protalign&amp;blast_rank=86&amp;RID=CJ3JAY4J013">ref|ZP_01748681.1|</a><a name="126732891"></a>  putative methanol dehydrogenase protein, large subunit [Sagittula 
stellata E-37]
 <a title="Show report for EBA05672" href="http://www.ncbi.nlm.nih.gov/protein/126706597?report=genbank&amp;log$=protalign&amp;blast_rank=86&amp;RID=CJ3JAY4J013">gb|EBA05672.1|</a><a name="126706597"></a>  putative methanol dehydrogenase protein, large subunit [Sagittula 
stellata E-37]
Length=581

 Score =  618 bits (1594),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 304/584 (52%), Positives = 401/584 (69%), Gaps = 16/584 (3%)

Query  28   ANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPL  87
            ANS+L     +   W +QT DY    +S L +IN  NV +L+VAWT STG L GHEG+PL
Sbjct  2    ANSDLIEQMDNPAQWAIQTGDYKNQRYSELDQINKDNVSDLQVAWTFSTGVLRGHEGSPL  61

Query  88   VVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEH  147
            V+  +MY+HTPFPN VYA+DL    K++W+Y+PKQNP    V CCD VNRG+AY      
Sbjct  62   VIGDVMYVHTPFPNIVYALDLTQEGKIIWKYEPKQNPDVIPVMCCDTVNRGVAYADG---  118

Query  148  GPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELG  207
               KIFL+Q D  +VAL+A TGE +W+++N D ++G T T     VKDKV+VG +G E G
Sbjct  119  ---KIFLHQADTKVVALDANTGEVVWEVQNGDPSIGETNTATVLPVKDKVIVGISGGEFG  175

Query  208  VRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGG  267
            VRG VTAYN++ G+QEWRAY+ GPDED+L+D +   +         G +TWEGD W IGG
Sbjct  176  VRGSVTAYNMETGEQEWRAYSMGPDEDILMDPENTTNLGEPVGADSGTNTWEGDQWMIGG  235

Query  268  GTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPH  327
            GT WGWY+ D + ++IYYG+GNP+ WN + RPGDN+W+MTI  RD D+G AK+ YQ TPH
Sbjct  236  GTTWGWYSVDMEENLIYYGTGNPSTWNPSQRPGDNRWSMTIMARDIDSGMAKWVYQMTPH  295

Query  328  DEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            DEWD+ GVN M L+EQEVDG+   LLTH DRNGL YTL+R TG L+ A K D  VNW   
Sbjct  296  DEWDFDGVNEMILTEQEVDGEQRKLLTHFDRNGLGYTLDRVTGELLVAEKYDPAVNWTTG  355

Query  388  VDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVN  439
            VD+       G P    +YST     D N+ GICP+A+G  +Q   +Y P  +LF++  N
Sbjct  356  VDMDPDSDTYGRPAVVAQYSTEQNGEDVNSTGICPAALGSKDQQPAAYSPKTELFYVPTN  415

Query  440  HICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTGKMEWEVPEKFAVW  497
            H+CMD+EPF + Y AGQ +VGATL MYP P   G +G   A + + G+++W +PE+F+VW
Sbjct  416  HVCMDYEPFRVSYTAGQPYVGATLAMYPAPDSHGGMGNFIAWDNINGEIKWSLPEQFSVW  475

Query  498  GGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSG  557
             G LATAGD+VFYGTL+G++KA D+ TG+  ++F+ PSG+IG+ +TY+  GKQYI I SG
Sbjct  476  SGALATAGDVVFYGTLEGYLKAIDSETGDELYRFKTPSGIIGNVMTYEQGGKQYIGILSG  535

Query  558  VGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            +GGW G+GL   L +P  GLGAVG +  L+ YT +GG + VF+L
Sbjct  536  IGGWAGIGLAAGLTNPNDGLGAVGGYAALSDYTALGGQLTVFAL  579


&gt;<input name="getSeqGi" value="292493826" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_003529265" href="http://www.ncbi.nlm.nih.gov/protein/292493826?report=genbank&amp;log$=protalign&amp;blast_rank=87&amp;RID=CJ3JAY4J013">ref|YP_003529265.1|</a><a name="292493826"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=292493826[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=87"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003529265.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Nitrosococcus 
halophilus Nc4]
 <a title="Show report for ADE16878" href="http://www.ncbi.nlm.nih.gov/protein/291582421?report=genbank&amp;log$=protalign&amp;blast_rank=87&amp;RID=CJ3JAY4J013">gb|ADE16878.1|</a><a name="291582421"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=291582421[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=87"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADE16878.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Nitrosococcus 
halophilus Nc4]
Length=600

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=8918882&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=87">GENE ID: 8918882 Nhal_3866</a> | PQQ-dependent dehydrogenase, methanol/ethanol
family [Nitrosococcus halophilus Nc4]

 Score =  619 bits (1596),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 300/599 (50%), Positives = 407/599 (68%), Gaps = 16/599 (3%)

Query  13   SMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAW  72
            S+  +A +++     A  EL  + K+  NW+M    Y    +S+L +IN+ N ++L+VAW
Sbjct  7    SLAILALIMSGMELAAADELLEMQKNSDNWIMPAGTYDNQRYSKLDQINTDNAQDLRVAW  66

Query  73   TLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQN-PAARAVAC  131
            T STG L GHEG PLV+DG MY+HTPFPN V+A+DL++   + W+Y+P QN      V C
Sbjct  67   TFSTGVLRGHEGNPLVIDGTMYVHTPFPNKVFALDLDEDGAIKWKYEPVQNYEETVPVMC  126

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD +NRGLAY      G  KIFL Q D  +VAL+AKTG+ +W ++  D   G+T TGAP 
Sbjct  127  CDTINRGLAY------GDGKIFLAQADTTLVALDAKTGKVVWSVKRDDPKQGATSTGAPH  180

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            V KDKVLVG +G E GVRGY+ AY++  G++ W+AY+TGPDE++L+D +           
Sbjct  181  VFKDKVLVGISGGEFGVRGYLEAYDVNSGERIWKAYSTGPDEEMLIDPEKTTHLLKPVGK  240

Query  252  GLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGR  311
               L +WEG+ WKIGGGT WGW+AYDP+L+++YYG+ NP  WN   RPGDN+W+MTI+ R
Sbjct  241  NSSLESWEGEQWKIGGGTTWGWFAYDPELNLVYYGTANPGTWNPVQRPGDNRWSMTIFAR  300

Query  312  DADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGA  371
            D DTG AK+ YQ TPHDEWDY GVN M L +Q++DG+   LL H DRNG  YTL+R TG 
Sbjct  301  DLDTGVAKWAYQMTPHDEWDYDGVNEMVLVDQKIDGEERKLLVHLDRNGFGYTLDRVTGE  360

Query  372  LVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTR---MDHNAKGICPSAMGYHNQGIESYD  428
            L+ A K D  VNW   VD++TG P  DP YST     D N   ICP+A+G  +Q   ++ 
Sbjct  361  LLVAEKFDPVVNWATHVDMETGRPQVDPRYSTHQNGQDVNTTNICPAALGSKDQQPVAFS  420

Query  429  PDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK------GMLGQVKAMNAV  482
            P   LF++  NH+CM++EPF + Y AGQ +VGATL M+PG K        LG+  A +A 
Sbjct  421  PRTGLFYVPANHVCMNYEPFEVSYTAGQPYVGATLTMFPGGKVSGDGSTHLGRFFAWDAR  480

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
             GK+ WE+PE+F+VW GTLATAGD+V YGTL+G++K  D ++G   ++F+ PSG+IG+ +
Sbjct  481  KGKVVWEIPERFSVWSGTLATAGDIVAYGTLEGYLKVVDAKSGRELYRFKTPSGIIGNVM  540

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TYQH GKQY+A+ SG+GGW G+G+   L+  T GLGAVGA+R L  +T +GG++ VF+L
Sbjct  541  TYQHKGKQYLAVLSGLGGWAGIGMAAGLQGETEGLGAVGAYRSLEDWTNLGGTLTVFTL  599


&gt;<input name="getSeqGi" value="188581014" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_001924459" href="http://www.ncbi.nlm.nih.gov/protein/188581014?report=genbank&amp;log$=protalign&amp;blast_rank=88&amp;RID=CJ3JAY4J013">ref|YP_001924459.1|</a><a name="188581014"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=188581014[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=88"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_001924459.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Methylobacterium populi BJ001]
 <a title="Show report for ACB79924" href="http://www.ncbi.nlm.nih.gov/protein/179344512?report=genbank&amp;log$=protalign&amp;blast_rank=88&amp;RID=CJ3JAY4J013">gb|ACB79924.1|</a><a name="179344512"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=179344512[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=88"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACB79924.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylobacterium 
populi BJ001]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=6309195&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=88">GENE ID: 6309195 Mpop_1761</a> | PQQ-dependent dehydrogenase
[Methylobacterium populi BJ001]

 Score =  618 bits (1594),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 304/572 (53%), Positives = 399/572 (70%), Gaps = 22/572 (4%)

Query  43   VMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNN  102
            V+QT DY+ T +S+L +IN  NVKNL+VAWT STG L GHEG+PLVV  IMY+HTPFPN 
Sbjct  36   VLQTVDYANTRYSKLDQINKDNVKNLQVAWTFSTGVLRGHEGSPLVVGNIMYVHTPFPNI  95

Query  103  VYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIV  162
            VYA+DL+   K++W+Y+PKQ+P+   V CCD VNRGLAY          I L+Q D  +V
Sbjct  96   VYALDLDQGAKIVWKYEPKQDPSVIPVMCCDTVNRGLAYADGA------ILLHQADTTLV  149

Query  163  ALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQ  222
            +L+AKTG+  W ++N D + G T T     VKDKV+VG +G E GV+ +VTAY++K GK+
Sbjct  150  SLDAKTGKVNWSVKNGDPSKGETNTATVLPVKDKVIVGISGGEFGVQCHVTAYDLKSGKK  209

Query  223  EWRAYATGPDEDLLLDKDFNKDNPHYGQ---FGLGLSTWEGDAWKIGGGTNWGWYAYDPK  279
             WR Y+ GPD+ LL+D +      H G+       L TWEGD WK GGG  WGW++YDPK
Sbjct  210  VWRGYSMGPDDQLLVDPE---KTTHLGKPIGKDSSLKTWEGDQWKTGGGCTWGWFSYDPK  266

Query  280  LDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMG  339
            LD++YYGSGNP+ WN   RPGDNKW+MT+W R+ DTG  K+ YQ TPHDEWDY G+N M 
Sbjct  267  LDLMYYGSGNPSTWNPKQRPGDNKWSMTVWARNPDTGMTKWVYQMTPHDEWDYDGINEMI  326

Query  340  LSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKT-----GL  394
            L++Q+VDGK  PLLTH DRNG  YTL+R TG L+ A K D  VNW  KVD+       G 
Sbjct  327  LTDQKVDGKDRPLLTHFDRNGFGYTLDRATGELLVAEKFDPVVNWATKVDMDKGSKTYGR  386

Query  395  PIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLP  451
            P+   +YST     D N+KGICP+A+G  +Q   ++ P   LF++  NH+CMD+EPF + 
Sbjct  387  PLVVSKYSTEQNGEDVNSKGICPAALGTKDQQPAAFSPKTNLFYVPTNHVCMDYEPFRVT  446

Query  452  YRAGQFFVGATLNMYPGP--KGMLGQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVF  509
            Y  GQ +VGATL+MYP P   G +G   A + V GK+ W  PE+F+ WGG LATAGD+VF
Sbjct  447  YTPGQPYVGATLSMYPAPGSHGGMGNFIAWDGVKGKIIWSNPEQFSAWGGALATAGDVVF  506

Query  510  YGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFD  569
            YGTL+G++KA D+++G+  ++F+ PSG+IG+ +TY+H GKQY+ + SGVGGW G+GL   
Sbjct  507  YGTLEGYLKAVDSKSGKELYKFKTPSGIIGNVMTYEHKGKQYVGVLSGVGGWAGIGLAAG  566

Query  570  LKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            L DP AGLGAVG +  L+ YT +GG + VF+L
Sbjct  567  LTDPNAGLGAVGGYAALSSYTNLGGQLTVFAL  598


&gt;<input name="getSeqGi" value="114327315" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_744472" href="http://www.ncbi.nlm.nih.gov/protein/114327315?report=genbank&amp;log$=protalign&amp;blast_rank=89&amp;RID=CJ3JAY4J013">ref|YP_744472.1|</a><a name="114327315"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114327315[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=89"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_744472.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit 1 [Granulibacter bethesdensis 
CGDNIH1]
 <a title="Show report for ABI61549" href="http://www.ncbi.nlm.nih.gov/protein/114315489?report=genbank&amp;log$=protalign&amp;blast_rank=89&amp;RID=CJ3JAY4J013">gb|ABI61549.1|</a><a name="114315489"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=114315489[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=89"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABI61549.1" border="0" height="16" width="16"></a> methanol dehydrogenase subunit 1 [Granulibacter bethesdensis 
CGDNIH1]
Length=598

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4274875&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=89">GENE ID: 4274875 GbCGDNIH1_0651</a> | methanol dehydrogenase subunit 1
[Granulibacter bethesdensis CGDNIH1] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  618 bits (1594),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 300/606 (50%), Positives = 401/606 (66%), Gaps = 14/606 (2%)

Query  1    MQICKLASGCGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEI  60
            M+   L+  C   ML + A+  +    AN EL +LSKD  NW M   DY+    S L +I
Sbjct  1    MKQQTLSRVCA-MMLGIGALAVSFQAQANDELVKLSKDSANWSMPAGDYANQRHSALKQI  59

Query  61   NSHNVKNLKVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKP  120
               N   L+  W+ STG L GHEG PL++  +MY+HTPFPN V+A+DLND  +++W Y+P
Sbjct  60   TVANASKLRPVWSFSTGVLRGHEGGPLIIGDVMYVHTPFPNKVFALDLNDNGRIIWVYEP  119

Query  121  KQNPAARAVACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDI  180
            KQ+P    V CCD VNRG+AY      G  KI L+Q D  +VALNAKTG+E+WK+   D 
Sbjct  120  KQDPDVIPVMCCDTVNRGVAY------GDGKIILHQADNGLVALNAKTGKEVWKVMTGDA  173

Query  181  AMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKD  240
              G T T AP V+KDKV+VG +G E G++G + ++N+KDG + W AY+ G D+ +L D  
Sbjct  174  KKGETGTSAPLVIKDKVMVGISGGEFGIQGRLMSFNLKDGSKAWTAYSVGTDDQILFDDK  233

Query  241  FNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPG  300
                    G+    + TW+GD WK GGG+ WGW +YDP  +++YYGSGNP+ WN   RPG
Sbjct  234  TTAMGKPVGKDS-SIKTWQGDQWKTGGGSTWGWISYDPDTNLVYYGSGNPSTWNPVQRPG  292

Query  301  DNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNG  360
            DNKW+MT++ RDADTG AK+ YQ TPHDEWDY G+N M L+  +V+GK T  L H DRNG
Sbjct  293  DNKWSMTVFARDADTGVAKWVYQMTPHDEWDYDGINEMILANTKVNGKETKALVHFDRNG  352

Query  361  LVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAM  417
              Y L+R TG L+ A K D  VNW   V+LKTGLP R  +YST     DHN KGICP+A+
Sbjct  353  FAYVLDRVTGELLQANKFDPAVNWATGVNLKTGLPDRVKKYSTEAGGEDHNTKGICPAAL  412

Query  418  GYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKG--MLGQ  475
            G  ++   S+DP   +F++  NH+CMD+EPF + Y AGQ FVGATL+M+P P G   LG 
Sbjct  413  GSKDEQPASFDPKTHMFYVPTNHVCMDYEPFKVSYTAGQPFVGATLSMFP-PAGEDHLGN  471

Query  476  VKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPS  535
              A +   GK+ W +PE F+VW G L+T   +VFYGTLDGF+KA D + G+L ++++ PS
Sbjct  472  FIAYDVDKGKINWSIPETFSVWAGALSTDSGVVFYGTLDGFLKAVDAKNGKLLYKYKTPS  531

Query  536  GVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGS  595
            G+IG+   Y+H GK+YIA+ SGVGGW G+G+   L   T GLGAVGA++ L+ YTQ+GG 
Sbjct  532  GIIGNVTPYEHKGKEYIAVLSGVGGWAGIGMAAGLAGDTEGLGAVGAYKALSSYTQLGGV  591

Query  596  VFVFSL  601
            + VF++
Sbjct  592  LTVFAV  597


&gt;<input name="getSeqGi" value="121611870" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_999677" href="http://www.ncbi.nlm.nih.gov/protein/121611870?report=genbank&amp;log$=protalign&amp;blast_rank=90&amp;RID=CJ3JAY4J013">ref|YP_999677.1|</a><a name="121611870"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=121611870[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=90"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_999677.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Verminephrobacter eiseniae EF01-2]
 <a title="Show report for ABM60659" href="http://www.ncbi.nlm.nih.gov/protein/121556510?report=genbank&amp;log$=protalign&amp;blast_rank=90&amp;RID=CJ3JAY4J013">gb|ABM60659.1|</a><a name="121556510"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=121556510[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=90"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABM60659.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Verminephrobacter eiseniae EF01-2]
Length=608

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4692948&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=90">GENE ID: 4692948 Veis_4972</a> | Pyrrolo-quinoline quinone
[Verminephrobacter eiseniae EF01-2]

 Score =  618 bits (1594),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 304/601 (51%), Positives = 408/601 (68%), Gaps = 18/601 (3%)

Query  10   CGGSMLAMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLK  69
             G +MLA A   A+ +  A++ELD+L  +  NW  Q  DY+   +S L ++++ N KNL+
Sbjct  8    VGLAMLATAT--ASITARADAELDKLIANPANWAAQAGDYANHRYSELKQVHAGNAKNLQ  65

Query  70   VAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAV  129
            VAWT+STG L GHEG+PLV    MYIH+PFPN V A++L D +   W+Y+PKQ+     V
Sbjct  66   VAWTVSTGVLRGHEGSPLVFGDTMYIHSPFPNKVIALNLKD-QTFKWKYEPKQDNNVVPV  124

Query  130  ACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGA  189
             CCD V+RGLAY      G  KI L Q D  +VAL+A TG+ +W ++N D  +G T T A
Sbjct  125  MCCDTVSRGLAY------GDGKILLQQADTTLVALDAHTGKVVWSVKNGDPKIGETNTNA  178

Query  190  PFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYG  249
            P V KDKV+ G +G E GVRG + AY++K GK  W A++TGPDED+L D           
Sbjct  179  PHVFKDKVITGISGGEFGVRGRLIAYDLKTGKTVWTAFSTGPDEDMLFDPATTMTWTDGK  238

Query  250  QFGLG----LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWT  305
               +G    L TW+GD WK+GGGT WGWY+YDPKL+++YYGSGNP  WN + RPGDNKW+
Sbjct  239  MAPVGKDSSLKTWKGDQWKLGGGTTWGWYSYDPKLNLVYYGSGNPGTWNPSQRPGDNKWS  298

Query  306  MTIWGRDADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTL  365
            MT++ RD DTG+A++ YQ TPHDEWDY GVN + L++  + GK  P + H DRNG  YTL
Sbjct  299  MTLFARDLDTGKARWVYQMTPHDEWDYDGVNELVLADLNIKGKKVPSVVHMDRNGYAYTL  358

Query  366  NRETGALVNAFKIDDTVNWVKKVDLKTGLPIRDPEYS---TRMDHNAKGICPSAMGYHNQ  422
             RETG L+ A K D T+NW  K+D+K+G P+ + +YS   T  D N KGICPSA+G  +Q
Sbjct  359  QRETGELLVAEKFDPTINWASKIDMKSGRPVVNAKYSPATTGPDVNVKGICPSALGTKDQ  418

Query  423  GIESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMN  480
               SYD    +F +  NH+CMD+EPF + Y AGQ +VGATL MYP PK  G +G   A +
Sbjct  419  QPMSYDRKSGIFLVPTNHVCMDYEPFQVEYTAGQPYVGATLAMYPTPKSHGGMGNFIAWD  478

Query  481  AVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGH  540
            A  GK+ W  PE+F+VW G LATAGD+VFYGTL+G++KA   + G+  W+F+ PSG+IG+
Sbjct  479  AAAGKILWSKPERFSVWSGALATAGDIVFYGTLEGYLKAVSIKDGKELWKFKTPSGIIGN  538

Query  541  PITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFS  600
              TY   GKQY+ +YSG+GGW G+G+   L++ + GLGAVG +R+LA YT +GG++F+F+
Sbjct  539  VFTYLFEGKQYVGVYSGIGGWAGIGMAAGLENSSDGLGAVGGYRDLAKYTDLGGTLFIFA  598

Query  601  L  601
            L
Sbjct  599  L  599


&gt;<input name="getSeqGi" value="114706743" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_01439643" href="http://www.ncbi.nlm.nih.gov/protein/114706743?report=genbank&amp;log$=protalign&amp;blast_rank=91&amp;RID=CJ3JAY4J013">ref|ZP_01439643.1|</a><a name="114706743"></a>  putative pqq dehydrogenase protein [Fulvimarina pelagi HTCC2506]
 <a title="Show report for EAU40815" href="http://www.ncbi.nlm.nih.gov/protein/114537691?report=genbank&amp;log$=protalign&amp;blast_rank=91&amp;RID=CJ3JAY4J013">gb|EAU40815.1|</a><a name="114537691"></a>  putative pqq dehydrogenase protein [Fulvimarina pelagi HTCC2506]
Length=633

 Score =  619 bits (1596),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 300/600 (50%), Positives = 404/600 (67%), Gaps = 11/600 (2%)

Query  13   SMLAMAAVLAAQS-THANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVA  71
            + LA + +LAA     A+  L   + +   W M T +Y+   +S L  IN  NV ++  A
Sbjct  8    AALASSLILAAGGYASASDALQEAASNPAQWAMPTGNYANQRYSELDMINKENVGDMVPA  67

Query  72   WTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVAC  131
            W+ STG L GHEG PLV+  +MY+HTPFPN VYA+DL    +++W+++PKQ+P    V C
Sbjct  68   WSFSTGVLRGHEGNPLVIGNVMYVHTPFPNIVYALDLTQDGRIIWKHEPKQDPNVIPVMC  127

Query  132  CDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPF  191
            CD VNRG+AY PA    PA + L+Q D ++ ALNA+TGE+IW+ +N D + G T T AP 
Sbjct  128  CDTVNRGVAYAPAEGENPAMVILHQADTNVTALNAETGEQIWQTQNGDPSKGETGTAAPM  187

Query  192  VVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQF  251
            V KDKVL+G +G E GVRG VTAYN+ DG Q WRAY+TGPD+++L+D +           
Sbjct  188  VFKDKVLIGISGGEFGVRGSVTAYNLSDGSQAWRAYSTGPDDEMLVDPENTMALGKPVGE  247

Query  252  GLGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGR  311
               + TWEGD W+IGGGT WGW+AYDP+L+++YYG+GNP+ WN   RPGDNKW+MTI  R
Sbjct  248  NSSIETWEGDQWQIGGGTTWGWFAYDPELNLVYYGTGNPSTWNPAQRPGDNKWSMTIMAR  307

Query  312  DADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGA  371
            DAD+G AK+ YQ TPHDEWD+ GVN M L++ +VDG+    L H DRNG  YT++RETG 
Sbjct  308  DADSGMAKWLYQMTPHDEWDFDGVNEMILADIDVDGEERKALVHFDRNGFAYTMDRETGE  367

Query  372  LVNAFKIDDTVNWVKKVDL-----KTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQG  423
            L+ A K D  VNW  +V +     + G P    EYST     D N  GICP+A+G  +Q 
Sbjct  368  LLVAEKYDPVVNWATEVVMDPESDQYGRPQVVSEYSTEQNGEDVNTTGICPAALGTKDQQ  427

Query  424  IESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNA  481
              ++ P   LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P   G +G   A +A
Sbjct  428  PAAFSPKTGLFYVPTNHVCMDYEPFRVAYTAGQPYVGATLSMYPAPDSHGGMGNFIAWDA  487

Query  482  VTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHP  541
              G++ W VPE+F+VW G LATAGD+VFYGTL+G++KA D   GE  + ++ PSG+IG+ 
Sbjct  488  GKGEIVWSVPEQFSVWSGALATAGDIVFYGTLEGYLKAVDVENGEELYSYKTPSGIIGNV  547

Query  542  ITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            +TY+  GKQY+ I SG+GGW G+GL   L DP AGLGAVG +  L++YT +GG + VF++
Sbjct  548  MTYEQEGKQYVGILSGIGGWAGIGLAAGLTDPNAGLGAVGGYAALSNYTALGGQLTVFTV  607


&gt;<input name="getSeqGi" value="119382777" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_913833" href="http://www.ncbi.nlm.nih.gov/protein/119382777?report=genbank&amp;log$=protalign&amp;blast_rank=92&amp;RID=CJ3JAY4J013">ref|YP_913833.1|</a><a name="119382777"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=119382777[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=92"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_913833.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Paracoccus denitrificans PD1222]
 <a title="Show report for ABL68137" href="http://www.ncbi.nlm.nih.gov/protein/119372544?report=genbank&amp;log$=protalign&amp;blast_rank=92&amp;RID=CJ3JAY4J013">gb|ABL68137.1|</a><a name="119372544"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=119372544[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=92"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABL68137.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Paracoccus denitrificans PD1222]
Length=600

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4578561&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=92">GENE ID: 4578561 Pden_0020</a> | Pyrrolo-quinoline quinone
[Paracoccus denitrificans PD1222]

 Score =  617 bits (1592),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 305/599 (51%), Positives = 405/599 (68%), Gaps = 22/599 (4%)

Query  16   AMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLS  75
             +A +++  +  AN  +       + W +Q  DY+ T +S L +IN  NVK+L+VAWT S
Sbjct  9    CLALLMSGTAALANDSVLAEIAKPQQWAIQMGDYANTRYSTLDQINKDNVKDLRVAWTFS  68

Query  76   TGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVV  135
            TG L GHEG+PLV+  +MY+HTPFPN V+A+DLND  K+LW+Y+P+Q+P   AV CCD V
Sbjct  69   TGVLRGHEGSPLVIGDVMYVHTPFPNRVFALDLNDNGKILWRYEPQQDPNVIAVMCCDTV  128

Query  136  NRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKD  195
             RGL+Y          I L Q D  +VAL+A +GE  W  +  D  +G TLT     VKD
Sbjct  129  YRGLSYADG------MILLGQADTTVVALDATSGEVKWSTKIGDPGIGETLTATVVPVKD  182

Query  196  KVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ---FG  252
            KVLVG +G E GVRG +TA N+ DG + W+A++TGPDE+LL+D +      H G+     
Sbjct  183  KVLVGISGGEYGVRGRMTALNLTDGSEAWKAWSTGPDEELLVDPETTT---HLGKPIGAD  239

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
              L++WEGD W+IGGGT WGW++YDP L+++YYG+GNP+ WN + RPGDNKW+MTI  RD
Sbjct  240  SSLNSWEGDQWQIGGGTIWGWFSYDPDLNLVYYGTGNPSTWNPSQRPGDNKWSMTIMARD  299

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGAL  372
            ADTG AK+ YQ TPHDEWDY GVN M L+ Q VDG+   LLTH DRNGL YT++RETG L
Sbjct  300  ADTGMAKWFYQMTPHDEWDYDGVNEMILTNQTVDGQERKLLTHFDRNGLAYTMDRETGEL  359

Query  373  VNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            + A K D  VNW   VD+       G P    EYST     D N  G+CP+A+G  +Q  
Sbjct  360  LVAEKYDPVVNWTTGVDMDPNSETYGRPAVVAEYSTAQNGEDENTTGVCPAALGTKDQQP  419

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAV  482
             ++ P   LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P   G +G   A +  
Sbjct  420  AAFSPKTNLFYVPTNHVCMDYEPFRVAYTAGQPYVGATLSMYPAPNSHGGMGNFIAWDNT  479

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            TG+++W VPE+F+VW G LATAGD+VFYGTL+G++KA D +TGE  ++F+ PSG+IG+ +
Sbjct  480  TGEIKWSVPEQFSVWSGALATAGDVVFYGTLEGYLKAVDAQTGEELYKFKTPSGIIGNVM  539

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY+H GKQY+ I SGVGGW G+GL   L +P  GLGAVG +  L+ YT++GG + VF L
Sbjct  540  TYEHGGKQYVGILSGVGGWAGIGLAAGLTNPNDGLGAVGGYASLSQYTELGGQLTVFEL  598


&gt;<input name="getSeqGi" value="2160682" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for AAB58890" href="http://www.ncbi.nlm.nih.gov/protein/2160682?report=genbank&amp;log$=protalign&amp;blast_rank=93&amp;RID=CJ3JAY4J013">gb|AAB58890.1|</a><a name="2160682"></a>  methanol dehydrogenase large subunit homolog [Methylobacterium 
extorquens AM1]
Length=601

 Score =  617 bits (1592),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 302/584 (52%), Positives = 404/584 (69%), Gaps = 16/584 (3%)

Query  28   ANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPL  87
            AN  + +   +    V+QT DY+ T +S+L +IN+ NVKNL+VAWT STG L GHEG+PL
Sbjct  21   ANESVLKGVANPAEQVLQTVDYANTRYSKLDQINASNVKNLQVAWTFSTGVLRGHEGSPL  80

Query  88   VVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEH  147
            VV  IMY+HTPFPN VYA+DL+   K++W+Y+PKQ+P+   V CCD VNRGLAY      
Sbjct  81   VVGNIMYVHTPFPNIVYALDLDQGAKIVWKYEPKQDPSVIPVMCCDTVNRGLAYADGA--  138

Query  148  GPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELG  207
                I L+Q D  +V+L+AK+G+  W ++N D + G T T     VKDKV+VG +G E G
Sbjct  139  ----ILLHQADTTLVSLDAKSGKVNWSVKNGDPSKGETNTATVLPVKDKVIVGISGGEFG  194

Query  208  VRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGG  267
            V+ +VTAY++K GK+ WR Y+ GPD+ L++D +              L TWEGD WK GG
Sbjct  195  VQCHVTAYDLKSGKKVWRGYSIGPDDQLIVDPEKTTSLGKPIAKDSSLKTWEGDQWKTGG  254

Query  268  GTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPH  327
            G  WGW++YDPKLD++YYGSGNP+ WN   RPGDNKW+MTIW R+ DTG AK+ YQ TPH
Sbjct  255  GCTWGWFSYDPKLDLMYYGSGNPSTWNPKQRPGDNKWSMTIWARNPDTGMAKWVYQMTPH  314

Query  328  DEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            DEWD+ G+N M L++Q+ DGK  PLLTH DRNG  YTL+R TG ++ A K D  VNW  K
Sbjct  315  DEWDFDGINEMILTDQKFDGKDRPLLTHFDRNGFGYTLDRATGEVLVAEKFDPVVNWATK  374

Query  388  VDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVN  439
            VDL       G P+   +YST     D N+KGICP+A+G  +Q   ++ P   LF++  N
Sbjct  375  VDLDKGSKTYGRPLVVSKYSTEQNGEDVNSKGICPAALGTKDQQPAAFSPKTGLFYVPTN  434

Query  440  HICMDWEPFMLPYRAGQFFVGATLNMYPGP--KGMLGQVKAMNAVTGKMEWEVPEKFAVW  497
            H+CMD+EPF + Y  GQ +VGATL+MYP P   G +G   A + + GK++W  PE+F+ W
Sbjct  435  HVCMDYEPFRVTYTPGQPYVGATLSMYPAPGSHGGMGNFIAWDNLQGKIKWSNPEQFSAW  494

Query  498  GGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSG  557
            GG LAT+GD++FYGTL+GF+KA D++TG+  ++F+ PSG+IG+ +TY+H GKQ++A+ SG
Sbjct  495  GGALATSGDVLFYGTLEGFLKAVDSKTGKELYKFKTPSGIIGNVMTYEHKGKQHVAVLSG  554

Query  558  VGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            VGGW G+GL   L DP AGLGAVG +  L+ YT +GG + VFSL
Sbjct  555  VGGWAGIGLAAGLTDPNAGLGAVGGYAALSSYTNLGGQLTVFSL  598


&gt;<input name="getSeqGi" value="298291035" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_003692974" href="http://www.ncbi.nlm.nih.gov/protein/298291035?report=genbank&amp;log$=protalign&amp;blast_rank=94&amp;RID=CJ3JAY4J013">ref|YP_003692974.1|</a><a name="298291035"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=298291035[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=94"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003692974.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Starkeya novella DSM 506]
 <a title="Show report for ADH88355" href="http://www.ncbi.nlm.nih.gov/protein/296927546?report=genbank&amp;log$=protalign&amp;blast_rank=94&amp;RID=CJ3JAY4J013">gb|ADH88355.1|</a><a name="296927546"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=296927546[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=94"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ADH88355.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Starkeya 
novella DSM 506]
Length=601

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=9332096&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=94">GENE ID: 9332096 Snov_1035</a> | PQQ-dependent dehydrogenase
[Starkeya novella DSM 506]

 Score =  616 bits (1588),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 305/584 (52%), Positives = 398/584 (68%), Gaps = 16/584 (3%)

Query  28   ANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPL  87
            AN  L  + KD + W +QT DY+ T +S+L +IN+ NV  L+VAWT STG L GHEG PL
Sbjct  22   ANDGLTNIIKDPKQWGIQTGDYANTRYSKLDQINAGNVGKLQVAWTFSTGVLRGHEGGPL  81

Query  88   VVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEH  147
            ++  +MY+HTPFPN VYA+DLN+  ++LW+Y+PKQ+P    V CCD VNRGLAY      
Sbjct  82   IIGDVMYVHTPFPNIVYALDLNNDGRILWKYEPKQDPNVIPVMCCDTVNRGLAY------  135

Query  148  GPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELG  207
                IFL+Q D  +VAL+AKTG++ W + N D   G T T     VKDKV+VG +G E G
Sbjct  136  SDGTIFLHQADTTLVALDAKTGQKKWSVVNGDPKKGETNTATVLPVKDKVIVGISGGEFG  195

Query  208  VRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGG  267
            VR +VTAY+ K GKQ WR Y+ GPD ++L+D                L +WEGD WKIGG
Sbjct  196  VRCHVTAYDTKTGKQVWRGYSMGPDSEMLVDPQKTTALGKPIGADSSLKSWEGDQWKIGG  255

Query  268  GTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPH  327
            G  WGWY+YDP+ +++YYGSGNP+ WN   RPGDNKW+MT+W RDADTG AK+ YQ TPH
Sbjct  256  GCTWGWYSYDPETNLVYYGSGNPSTWNPKQRPGDNKWSMTVWARDADTGMAKWVYQMTPH  315

Query  328  DEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKK  387
            DEWDY GVN M L++Q+ +G    LLTH DRNG  YTL+R +G L+ A K D  VNW  K
Sbjct  316  DEWDYDGVNEMILTDQQFNGAPRKLLTHFDRNGFGYTLDRVSGELLVAEKYDPAVNWATK  375

Query  388  VDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVN  439
            VD+       G P+   +YST     D N+KGICP+A+G  +Q   ++ P   LF++  N
Sbjct  376  VDMDKNSPTYGRPLVVAKYSTEQNGEDVNSKGICPAALGTKDQQPAAFSPKTNLFYVPTN  435

Query  440  HICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAVTGKMEWEVPEKFAVW  497
            H+CMD+EPF + Y AGQ +VGATL+M+P P   G +G   A +   GK+ W + E F+VW
Sbjct  436  HVCMDYEPFRVSYTAGQPYVGATLSMFPAPNSHGGMGNFIAWDNTKGKIVWSLKEPFSVW  495

Query  498  GGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSG  557
             G LATAGD+VFYGTL+G++KA D++TG+  ++F+ PSG+IG+  TY+H GKQYIAI SG
Sbjct  496  SGALATAGDVVFYGTLEGYLKAVDSKTGKELYKFKTPSGIIGNVTTYEHGGKQYIAILSG  555

Query  558  VGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            VGGW G+GL   L DP AGLGAVG +  L++YT +GG + VF+L
Sbjct  556  VGGWAGIGLAAGLTDPNAGLGAVGGYAALSNYTNLGGQLTVFAL  599


&gt;<input name="getSeqGi" value="115522876" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_779787" href="http://www.ncbi.nlm.nih.gov/protein/115522876?report=genbank&amp;log$=protalign&amp;blast_rank=95&amp;RID=CJ3JAY4J013">ref|YP_779787.1|</a><a name="115522876"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=115522876[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=95"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_779787.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodopseudomonas palustris BisA53]
 <a title="Show report for ABJ04807" href="http://www.ncbi.nlm.nih.gov/protein/115516823?report=genbank&amp;log$=protalign&amp;blast_rank=95&amp;RID=CJ3JAY4J013">gb|ABJ04807.1|</a><a name="115516823"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=115516823[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=95"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ABJ04807.1" border="0" height="16" width="16"></a> Pyrrolo-quinoline quinone [Rhodopseudomonas palustris BisA53]
Length=603

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=4358547&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=95">GENE ID: 4358547 RPE_0851</a> | Pyrrolo-quinoline quinone
[Rhodopseudomonas palustris BisA53] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  614 bits (1583),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 301/582 (52%), Positives = 404/582 (69%), Gaps = 15/582 (3%)

Query  29   NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEGAPLV  88
            N+++ ++S++ ++WVM   DY    +S+L +I + NV  L+VAWT STG L GHEG PL+
Sbjct  26   NNDVLKMSQNPKDWVMPAGDYGNQRYSKLKQITADNVGKLQVAWTFSTGVLRGHEGGPLI  85

Query  89   VDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPAGEHG  148
            +  +MY+HTPFPN VYA+DLND  K++W+Y+PKQ+P    V CCD VNRG+AY       
Sbjct  86   IGNMMYVHTPFPNKVYAMDLNDDNKIVWKYEPKQDPNVIPVMCCDTVNRGVAYADG----  141

Query  149  PAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGAELGV  208
              KIFL+Q D  +VAL+AKTG+  W + N D   G+T T AP VVKDKVLVG +G E GV
Sbjct  142  --KIFLHQADTTLVALDAKTGKVEWTVVNGDPTKGATGTSAPLVVKDKVLVGISGGEFGV  199

Query  209  RGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGG  268
            + ++TAY+IK GKQ WRA++ GPDE +LLD +   +          + TW+GD WK+GGG
Sbjct  200  QCHMTAYDIKSGKQVWRAFSGGPDEQILLDPEKTTELGKPVGKDSSVKTWQGDQWKVGGG  259

Query  269  TNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD  328
              WGW +YDP+LD++YYGSGNP+ WN   RPGDNKW+MTI+ R+ DTG AK+ YQ TPHD
Sbjct  260  CTWGWTSYDPELDLVYYGSGNPSTWNPRQRPGDNKWSMTIFARNPDTGMAKWVYQMTPHD  319

Query  329  EWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKV  388
            EWDY GVN M L++Q+++G+   LLTH DRNGL YT++R TG L+ A K D  VNW   V
Sbjct  320  EWDYDGVNEMILTDQQINGQNRKLLTHFDRNGLAYTMDRATGELLVAEKYDPKVNWTTGV  379

Query  389  DLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNH  440
            D+       G P    +YST     D N KGICP+A+G  +Q   +Y PD ++F++  NH
Sbjct  380  DMNKSSPTYGRPKVVEQYSTDKQGEDVNVKGICPAALGTKDQQPAAYSPDTQMFYVPTNH  439

Query  441  ICMDWEPFMLPYRAGQFFVGATLNMYPGP-KGMLGQVKAMNAVTGKMEWEVPEKFAVWGG  499
            +CMD+EPF + Y AGQ +VGATL+MYP P    +G   A +   GK+ W   E+F+VW G
Sbjct  440  VCMDYEPFRVSYTAGQPYVGATLSMYPPPGDSHMGNFIAWDNKAGKILWSNKEQFSVWSG  499

Query  500  TLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVG  559
             LATAG +VFYGTL+G++KA D +TG+  ++F+ PSG+IG+  TY+H G+QYIA+ SGVG
Sbjct  500  ALATAGGVVFYGTLEGYLKAVDAKTGKELYKFKTPSGIIGNVTTYEHGGRQYIAVLSGVG  559

Query  560  GWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            GW G+GL   L DP AGLGAVG +  L +YT +GG++ VF+L
Sbjct  560  GWAGIGLAAGLTDPNAGLGAVGGYAALRNYTALGGTMTVFAL  601


&gt;<input name="getSeqGi" value="253997137" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for YP_003049201" href="http://www.ncbi.nlm.nih.gov/protein/253997137?report=genbank&amp;log$=protalign&amp;blast_rank=96&amp;RID=CJ3JAY4J013">ref|YP_003049201.1|</a><a name="253997137"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=253997137[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=96"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to YP_003049201.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase [Methylotenera mobilis JLW8]
 <a title="Show report for ACT48674" href="http://www.ncbi.nlm.nih.gov/protein/253983816?report=genbank&amp;log$=protalign&amp;blast_rank=96&amp;RID=CJ3JAY4J013">gb|ACT48674.1|</a><a name="253983816"></a> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=search&amp;term=253983816[PUID]&amp;RID=CJ3JAY4J013&amp;log$=genealign&amp;blast_rank=96"><img src="blastp%20of%20m.caps_files/G.gif" alt="Gene info linked to ACT48674.1" border="0" height="16" width="16"></a> PQQ-dependent dehydrogenase, methanol/ethanol family [Methylotenera 
mobilis JLW8]
Length=628

 <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&amp;cmd=search&amp;term=8169446&amp;RID=CJ3JAY4J013&amp;log$=geneexplicitprot&amp;blast_rank=96">GENE ID: 8169446 Mmol_1770</a> | PQQ-dependent dehydrogenase
[Methylotenera mobilis JLW8] <span class="Gene_PubMedLinks">(10 or fewer PubMed links)</span>

 Score =  614 bits (1584),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/629 (49%), Positives = 416/629 (66%), Gaps = 49/629 (8%)

Query  12   GSMLAMAAVL---AAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNL  68
            G  LA++A L    +    A  EL  L KDD  WV   KD+S + +SRL++IN  NVKN+
Sbjct  10   GVSLALSAGLFGMLSTPAFAEDELSTLMKDDNQWVHPRKDFSNSGYSRLSQINKGNVKNM  69

Query  69   KVAWTLSTGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARA  128
            K+AW+ +TG   GHEGAPLVV+G+MY+HT FPNNVYA+DLND +K+LW Y PKQ+P+ +A
Sbjct  70   KLAWSFATGVNRGHEGAPLVVNGVMYVHTAFPNNVYALDLNDNQKILWSYFPKQDPSTQA  129

Query  129  VACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTG  188
            + CCD VNRGL Y      G  KIFL Q DG +VAL+AKTG+++W  + ++   G++ T 
Sbjct  130  LLCCDNVNRGLGY------GEGKIFLQQNDGLLVALDAKTGKKLWDTQVTNPKEGASNTN  183

Query  189  APFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHY  248
            AP V+KDKV+ G +G E GVR Y++AYNIKDG   WRAY+TG D+D+L+  DFNKDNPHY
Sbjct  184  APHVIKDKVITGCSGGEYGVRCYISAYNIKDGALVWRAYSTGSDQDVLIGNDFNKDNPHY  243

Query  249  ----------------GQF-------------GLGLSTW-----EGDAWKIGGGTNWGWY  274
                            G F              LG+ TW     + D W+ GGG  WGWY
Sbjct  244  SALSLYQDVNGGNKIGGSFKALPKDQLKFPEKDLGVKTWLKPQAKKDGWQNGGGPTWGWY  303

Query  275  AYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHDEWDYAG  334
            +YDPKL+++YYG+GNP+ WN  +RPGDNKW+MTI+ RD DTG AK+GYQ TPHDEWDY G
Sbjct  304  SYDPKLNLMYYGTGNPSTWNPDVRPGDNKWSMTIFARDVDTGEAKWGYQMTPHDEWDYDG  363

Query  335  VNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTVNWVKKVDLKTGL  394
            +N + L E     K   L +H DRNG  YT +R  G+L+ A K+   VNW   VDLKTG+
Sbjct  364  MNEIILWE----AKGKKLASHFDRNGFGYTFDRTNGSLLVANKMHPFVNWAFNVDLKTGI  419

Query  395  PIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNHICMDWEPFMLPYRA  454
            P +DP++ST  D+NA+GICPSA+G  +Q   ++ P   +F++ +NH+CM +EP    Y A
Sbjct  420  PNKDPKFSTHQDYNAQGICPSALGVKDQQPAAFSPKTGMFYVPLNHVCMTYEPVESKYVA  479

Query  455  GQFFVGATLNMYPGPKGMLGQVKAMNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLD  514
            GQ +VG+TL M+PGP G++G   A + + GK  W   E+F+ WGG L T+ +LVFYGTLD
Sbjct  480  GQPWVGSTLTMFPGPDGVMGGFMAWDGLKGKSAWYKKEQFSAWGGALVTSTNLVFYGTLD  539

Query  515  GFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPT  574
             + KA D   G+  W+FQ+ SGV+G+ ITY + GKQY+ + SG+GGW GV +   L + T
Sbjct  540  RWFKAVDANNGKELWKFQVGSGVVGNAITYSNKGKQYVGVLSGIGGWAGVAMNLGLTNST  599

Query  575  AGLGAVGAFRELAHYTQM--GGSVFVFSL  601
             GLGA G +++L  Y     GG++ VFSL
Sbjct  600  DGLGAAGGYKDLVKYNAAPGGGAMNVFSL  628


&gt;<input name="getSeqGi" value="1722883" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for P29968" href="http://www.ncbi.nlm.nih.gov/protein/1722883?report=genbank&amp;log$=protalign&amp;blast_rank=97&amp;RID=CJ3JAY4J013">sp|P29968.2|XOXF_PARDE</a><a name="1722883"></a>  RecName: Full=Putative dehydrogenase xoxF; Flags: Precursor
 <a title="Show report for AAC44555" href="http://www.ncbi.nlm.nih.gov/protein/1002869?report=genbank&amp;log$=protalign&amp;blast_rank=97&amp;RID=CJ3JAY4J013">gb|AAC44555.1|</a><a name="1002869"></a>  PQQ-dependent dehydrogenase large subunit [Paracoccus denitrificans]
Length=600

 Score =  612 bits (1579),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 303/599 (51%), Positives = 403/599 (67%), Gaps = 22/599 (4%)

Query  16   AMAAVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLS  75
             +A +++  +  AN +     +    W +Q  DY+ T +S L +IN  NVK+L+VAWT S
Sbjct  9    CLALLMSGTAALANEQRAGRDRQAPQWAIQMGDYANTRYSTLDQINKDNVKDLRVAWTFS  68

Query  76   TGTLHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVV  135
            TG L GHEG+PLV+  +MY+HTPFPN V+A+DLND  K+LW+Y+P+Q+P   AV  CD V
Sbjct  69   TGVLRGHEGSPLVIGDVMYVHTPFPNRVFALDLNDNGKILWRYEPQQDPNVIAVMSCDTV  128

Query  136  NRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKD  195
             RGL+Y          I L Q D  +VAL+A +GE  W  +  D  +G TLT     VKD
Sbjct  129  YRGLSYADG------MILLGQADTTVVALDATSGEVKWSTKIGDPGIGETLTATVVPVKD  182

Query  196  KVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ---FG  252
            KVLVG +G E GVRG +TA N+ DG + W+A++TGPDE+LL+D +      H G+     
Sbjct  183  KVLVGISGGEYGVRGRMTALNLTDGSEAWKAWSTGPDEELLVDPETTT---HLGKPIGAD  239

Query  253  LGLSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRD  312
              L++WEGD W+IGGGT WGW++YDP L+++YYG+GNP+ WN + RPGDNKW+MTI  RD
Sbjct  240  SSLNSWEGDQWQIGGGTIWGWFSYDPDLNLVYYGTGNPSTWNPSQRPGDNKWSMTIMARD  299

Query  313  ADTGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGAL  372
            ADTG AK+ YQ TPHDEWDY GVN M L+ Q VDG+   LLTH DRNGL YT++RETG L
Sbjct  300  ADTGMAKWFYQMTPHDEWDYDGVNEMILTNQTVDGQERKLLTHFDRNGLAYTMDRETGEL  359

Query  373  VNAFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGI  424
            + A K D  VNW   VD+       G P    EYST     D N  G+CP+A+G  +Q  
Sbjct  360  LVAEKYDPVVNWTTGVDMDPNSETYGRPAVVAEYSTAQNGEDENTTGVCPAALGTKDQQP  419

Query  425  ESYDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPK--GMLGQVKAMNAV  482
             ++ P   LF++  NH+CMD+EPF + Y AGQ +VGATL+MYP P   G +G   A +  
Sbjct  420  AAFSPKTNLFYVPTNHVCMDYEPFRVAYTAGQPYVGATLSMYPAPNSHGGMGNFIAWHNT  479

Query  483  TGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPI  542
            TG+++W VPE+F+VW G LATAGD+VFYGTL+G++K  D +TGE  ++F+ PSG+IG+ +
Sbjct  480  TGEIKWSVPEQFSVWSGALATAGDVVFYGTLEGYLKPVDAQTGEELYKFKTPSGIIGNVM  539

Query  543  TYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            TY+H GKQY+ I SGVGGW G+GL   L +P  GLGAVG +  L+ YT++GG + VF L
Sbjct  540  TYEHGGKQYVGILSGVGGWAGIGLAAGLTNPNDGLGAVGGYASLSQYTELGGQLTVFEL  598


&gt;<input name="getSeqGi" value="323135669" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08070752" href="http://www.ncbi.nlm.nih.gov/protein/323135669?report=genbank&amp;log$=protalign&amp;blast_rank=98&amp;RID=CJ3JAY4J013">ref|ZP_08070752.1|</a><a name="323135669"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylocystis 
sp. ATCC 49242]
 <a title="Show report for EFY01279" href="http://www.ncbi.nlm.nih.gov/protein/322398760?report=genbank&amp;log$=protalign&amp;blast_rank=98&amp;RID=CJ3JAY4J013">gb|EFY01279.1|</a><a name="322398760"></a>  PQQ-dependent dehydrogenase, methanol/ethanol family [Methylocystis 
sp. ATCC 49242]
Length=604

 Score =  612 bits (1578),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 312/601 (52%), Positives = 397/601 (66%), Gaps = 27/601 (4%)

Query  19   AVLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGT  78
            AVLA        EL  L KD + WV  T DY+    S L +I + NV  L  AW  STG 
Sbjct  11   AVLALTGAAKADELLALQKDPKQWVSPTGDYANLRHSALKQITAENVGKLAPAWQFSTGV  70

Query  79   LHGHEGAPLVVDGIMYIHTPFPNNVYAVDLND-TRKMLWQYKPKQNPAARAVACCDVVNR  137
            L GHEGAPLVV  +MY+HTPFPNNVYA+DL D   K+LW+Y+PKQ+P+   V CCD VNR
Sbjct  71   LRGHEGAPLVVGDVMYLHTPFPNNVYALDLKDPDHKILWKYEPKQDPSVVPVMCCDTVNR  130

Query  138  GLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKV  197
            GLAY      G  KIFL Q D  +VAL+AKTG+ +W ++N D A G T T AP V KDKV
Sbjct  131  GLAY------GDGKIFLAQADTTLVALDAKTGKLVWSVKNGDPAKGQTSTAAPHVFKDKV  184

Query  198  LVGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQ---FGLG  254
             VG AG E GVRG++TAY+IKDGK  WR Y+ GPD D L+D +      H G+      G
Sbjct  185  FVGIAGGEFGVRGHITAYDIKDGKLAWRGYSMGPDSDTLMDPE---KTTHLGKPVGKDSG  241

Query  255  LSTWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDAD  314
            +STW+GD W+IGGGT WGWY+YDP+L+++YYGSGNP+ WN   RPGDN+W+MTIW RD D
Sbjct  242  ISTWQGDQWQIGGGTTWGWYSYDPELNLVYYGSGNPSTWNPKQRPGDNRWSMTIWARDLD  301

Query  315  TGRAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVN  374
            TG+AK+ YQ TPHDEWDY G+N M L++Q + G     L H DRNG  YTL+R TG L+ 
Sbjct  302  TGKAKWVYQMTPHDEWDYDGINEMVLADQNIGGTTRKTLVHFDRNGFGYTLDRVTGELLV  361

Query  375  AFKIDDTVNWVKKVDLKT-----GLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIES  426
            A K D  VNW  KVD+       G P+   +YST     D N +G+CP+A+G  +Q   S
Sbjct  362  AEKFDPAVNWATKVDMDKNSKTYGRPLVVSKYSTEQNGEDTNTQGVCPAALGVKDQQPVS  421

Query  427  YDPDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGM------LGQVKAMN  480
            YDP   LF +  NH+CMD+EPF + Y AGQ +VGATL MYP  K +       G   A +
Sbjct  422  YDPATGLFLVPTNHVCMDYEPFRVSYTAGQPYVGATLEMYPAGKVLGDGTNNTGNFIAWD  481

Query  481  AVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGH  540
            A  GK+ W   E+F+VW G ++T G + FYGTL+G++KA DT+TG+  ++++ PSG+IG+
Sbjct  482  AKVGKIVWSNKEQFSVWSGAVSTDGGVTFYGTLEGYLKAVDTKTGKELYKYKTPSGIIGN  541

Query  541  PITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFS  600
             ITY+  GKQY+A+ SGVGGW G+GL   L     GLGAVG +  LA+YT +GG + VF+
Sbjct  542  VITYESGGKQYVAVLSGVGGWAGIGLAAGLSKSNEGLGAVGNYASLANYTALGGVLTVFA  601

Query  601  L  601
            L
Sbjct  602  L  602


&gt;<input name="getSeqGi" value="335424094" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08553110" href="http://www.ncbi.nlm.nih.gov/protein/335424094?report=genbank&amp;log$=protalign&amp;blast_rank=99&amp;RID=CJ3JAY4J013">ref|ZP_08553110.1|</a><a name="335424094"></a>  Pyrrolo-quinoline quinone [Salinisphaera shabanensis E1L3A]
 <a title="Show report for ZP_08553443" href="http://www.ncbi.nlm.nih.gov/protein/335424434?report=genbank&amp;log$=protalign&amp;blast_rank=99&amp;RID=CJ3JAY4J013">ref|ZP_08553443.1|</a><a name="335424434"></a>  Pyrrolo-quinoline quinone [Salinisphaera shabanensis E1L3A]
 <a title="Show report for EGM27411" href="http://www.ncbi.nlm.nih.gov/protein/334889119?report=genbank&amp;log$=protalign&amp;blast_rank=99&amp;RID=CJ3JAY4J013">gb|EGM27411.1|</a><a name="334889119"></a>  Pyrrolo-quinoline quinone [Salinisphaera shabanensis E1L3A]
 <a title="Show report for EGM28652" href="http://www.ncbi.nlm.nih.gov/protein/334890382?report=genbank&amp;log$=protalign&amp;blast_rank=99&amp;RID=CJ3JAY4J013">gb|EGM28652.1|</a><a name="334890382"></a>  Pyrrolo-quinoline quinone [Salinisphaera shabanensis E1L3A]
Length=626

 Score =  612 bits (1579),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 300/592 (51%), Positives = 396/592 (67%), Gaps = 22/592 (4%)

Query  25   STHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTLHGHEG  84
            +T  +++L +L KD  NW M +  Y+   +S L +IN+ N   L  AWT STG L GHEG
Sbjct  25   NTSQSTDLVQLQKDPSNWTMWSGQYNGQRYSELDQINAENAGQLSPAWTFSTGVLRGHEG  84

Query  85   APLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARAVACCDVVNRGLAYVPA  144
             PLV+   MYI TPFPN V+A+DL +T  + W+Y+P QNP    + CCD VNRGLAY   
Sbjct  85   GPLVIGDTMYISTPFPNKVFALDL-ETHAIKWKYEPTQNPQVIPIMCCDTVNRGLAY---  140

Query  145  GEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVLVGSAGA  204
               G  KIFL Q D  +VAL+ KTG+  WK  N D   G + T AP V+KDKV  G +G 
Sbjct  141  ---GDGKIFLQQADTTLVALDQKTGKVEWKSVNGDPTKGESATNAPIVIKDKVYTGISGG  197

Query  205  ELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLD--KDFNKDNPHYGQFGLGLSTWEGDA  262
            E GVRG++TAYN+ DGK  WRAY+TGPD+ +L+D  K  N            L +W GD 
Sbjct  198  EFGVRGHLTAYNVSDGKMAWRAYSTGPDDTMLIDPKKTMNAVTQKPVGADTSLKSWGGDQ  257

Query  263  WKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGY  322
            WKIGGGT WGW  YDP+LD++YYG+GNP  WN T RPGDNK++MTI+ RD DTG AK+ Y
Sbjct  258  WKIGGGTTWGWMTYDPELDLLYYGTGNPGTWNPTQRPGDNKYSMTIFARDPDTGEAKWLY  317

Query  323  QKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKIDDTV  382
            Q TPHDEWDY GVN   L +Q++DGK   L+ H DRNG  YT +R TG L+ A K D  V
Sbjct  318  QMTPHDEWDYDGVNEKILVDQKIDGKDRKLVVHFDRNGFAYTQDRATGELLVAKKYDPAV  377

Query  383  NWVKKVDLKTGLPIRDPEYST--RMDHNAKGICPSAMGYHNQGIESYDPDKKLFFMGVNH  440
            NW   +D+KTG P    EYST  ++D N  GICP+A+G  +Q   SY P   LF++  NH
Sbjct  378  NWASGIDMKTGRPKLVDEYSTDGKVDQNVTGICPAALGSKDQQPASYSPKTGLFYVPTNH  437

Query  441  ICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVK-----------AMNAVTGKMEWE  489
            +CMD+EP  + Y AGQ +VG+T+ MYPGP+ ++   K           A +A TG+++W 
Sbjct  438  VCMDYEPSKVDYTAGQPYVGSTVAMYPGPQDIVNPTKEFEGKRMGTFIAFDATTGEIKWS  497

Query  490  VPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGK  549
            VPE+F+VW G LATAGD+VFYGTL+G++KA D +TG+  + F+ PSG+IG+  T++++GK
Sbjct  498  VPERFSVWSGALATAGDVVFYGTLEGYLKAIDAKTGKELYSFKTPSGIIGNVNTWKYDGK  557

Query  550  QYIAIYSGVGGWPGVGLVFDLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            QY+ + SG+GGW G+G+   L DP AGLGAVG +++L +YTQ+GG + VF+L
Sbjct  558  QYVGVLSGIGGWAGIGMAAGLTDPNAGLGAVGGYKDLKNYTQLGGVLTVFTL  609


&gt;<input name="getSeqGi" value="335044475" onclick="synchronizeCheck(this.value, 'getSeqAlignment1', 'getSeqGi', this.checked)" type="checkbox"><a title="Show report for ZP_08537500" href="http://www.ncbi.nlm.nih.gov/protein/335044475?report=genbank&amp;log$=protalign&amp;blast_rank=100&amp;RID=CJ3JAY4J013">ref|ZP_08537500.1|</a><a name="335044475"></a>  glucose dehydrogenase [Methylophaga aminisulfidivorans MP]
 <a title="Show report for EGL53605" href="http://www.ncbi.nlm.nih.gov/protein/333787721?report=genbank&amp;log$=protalign&amp;blast_rank=100&amp;RID=CJ3JAY4J013">gb|EGL53605.1|</a><a name="333787721"></a>  glucose dehydrogenase [Methylophaga aminisulfidivorans MP]
Length=592

 Score =  610 bits (1573),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 311/590 (53%), Positives = 402/590 (68%), Gaps = 17/590 (3%)

Query  20   VLAAQSTHANSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGTL  79
             LA  S  A  EL ++ KD  NWVM   +Y+   +S LT+IN  NVK+L +AW+ STG L
Sbjct  12   TLAVPSLAAADELLQMQKDPNNWVMPAGNYNNQRYSELTQINKDNVKDLNMAWSFSTGVL  71

Query  80   HGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQN-PAARAVACCDVVNRG  138
             GHEG  LV+   MY+HTPFPN VYA+DLN    + W+Y+PKQN      V CCD VNRG
Sbjct  72   RGHEGNSLVIGDTMYVHTPFPNIVYALDLNSDGAIKWKYEPKQNYDETVPVMCCDTVNRG  131

Query  139  LAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENSDIAMGSTLTGAPFVVKDKVL  198
            L+Y         KIFLNQ D  +VALNA+ G+ +W  +  D   G+T TGA FV KDKVL
Sbjct  132  LSYADG------KIFLNQADTTLVALNAEDGKVVWSDKRDDAKRGATSTGAAFVFKDKVL  185

Query  199  VGSAGAELGVRGYVTAYNIKDGKQEWRAYATGPDEDLLLDKDFNKDNPHYGQFG--LGLS  256
            VG +G E GVRGYV AY++ DG  +++AY+TGPD+++L+D   NK        G    L 
Sbjct  186  VGISGGEFGVRGYVQAYDL-DGNVKYKAYSTGPDDEMLVDP--NKTTSMLKPVGKDSSLK  242

Query  257  TWEGDAWKIGGGTNWGWYAYDPKLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTG  316
            TW+GD WKIGGGT WGWY+YDP L+M YYGSGNP+ WN   RPGDNKW+M++WGRD DTG
Sbjct  243  TWQGDQWKIGGGTTWGWYSYDPDLNMFYYGSGNPSTWNPVQRPGDNKWSMSLWGRDLDTG  302

Query  317  RAKFGYQKTPHDEWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAF  376
             AK+ YQ TPHDEWDY G+N + L++Q+V GK+     H DRNG  YT++R TG L+ A 
Sbjct  303  MAKWVYQMTPHDEWDYDGINEVVLADQKVKGKMHKTAVHFDRNGFGYTMDRVTGELLVAE  362

Query  377  KIDDTVNWVKKVDLKTGLPIRDPEYSTRM---DHNAKGICPSAMGYHNQGIESYDPDKKL  433
            K D  VNW   V+LKTGL  R  +YST     D N  G+CP+A+G  ++   +Y P   L
Sbjct  363  KYDPAVNWSNGVNLKTGLHDRVAKYSTARNGEDVNTSGVCPAALGSKDEQPSAYSPRTGL  422

Query  434  FFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGM-LGQVKAMNAVTGKMEWEVPE  492
            F++  NH+CMD+EPF + Y AGQ +VGATL+MYP P G  LG   A +A  GK+ W  PE
Sbjct  423  FYVPTNHVCMDYEPFEVEYVAGQPYVGATLSMYPAPGGTHLGNFIAWDAREGKIVWSNPE  482

Query  493  KFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELKWQFQLPSGVIGHPITYQHNGKQYI  552
            +F+VW G LATA D+VFYGTL+G++KA D +TG   W+F+ PSGVIG+  TY+H+GKQYI
Sbjct  483  RFSVWSGALATASDVVFYGTLEGYLKAVDAQTGRELWRFKTPSGVIGNVNTYKHDGKQYI  542

Query  553  AIYSGVGGWPGVGLVF-DLKDPTAGLGAVGAFRELAHYTQMGGSVFVFSL  601
            ++ SGVGGW G+G+    L++ T GLGAVGA++ L+ +T +GG + VFSL
Sbjct  543  SVLSGVGGWAGIGMAIPSLENETDGLGAVGAYKSLSSWTNLGGVLSVFSL  592


</form>

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